FFCP PHASE1:Hg19::chr17:77924634..77924661,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=125058 | |EntrezGene=125058 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28356 | |HGNC=28356 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N3Z4,Q96DH7 | |UniProt=Q8N3Z4,Q96DH7 | ||
|association_with_transcript=0bp_to_ENST00000340848,uc002jxh.2,uc002jxi.2,uc002jxk.1_5end | |association_with_transcript=0bp_to_ENST00000340848,uc002jxh.2,uc002jxi.2,uc002jxk.1_5end | ||
|cluster_id=chr17:77924634..77924661,- | |||
|coexpression_cluster_id=C88 | |coexpression_cluster_id=C88 | ||
|description=CAGE_peak_2_at_TBC1D16_5end | |description=CAGE_peak_2_at_TBC1D16_5end | ||
|id=chr17:77924634..77924661,- | |id=chr17:77924634..77924661,- | ||
|ontology_enrichment_celltype=CL:0000148;2.74e-60;10!CL:0000147;1.05e-42;14!CL:0000710;1.67e-29;20!CL:0002567;4.96e-24;3!CL:0000075;1.67e-21;27!CL:0002077;5.48e-15;34!CL:0002322;9.49e-14;5!CL:0002566;4.52e-09;1 | |ontology_enrichment_celltype=CL:0000148!6.79e-25!10;CL:0000541!6.79e-25!10;CL:0000147!2.84e-20!14;CL:0000710!2.99e-13!20;CL:0002322!1.89e-12!5;CL:0000075!7.99e-11!27;CL:0002567!5.88e-09!3;CL:0002077!5.41e-07!33 | ||
| | |ontology_enrichment_celltype_v019=CL:0000148;2.74e-60;10!CL:0000147;1.05e-42;14!CL:0000710;1.67e-29;20!CL:0002567;4.96e-24;3!CL:0000075;1.67e-21;27!CL:0002077;5.48e-15;34!CL:0002322;9.49e-14;5!CL:0002566;4.52e-09;1 | ||
|ontology_enrichment_disease=DOID:1909;2.95e-16;2 | |ontology_enrichment_celltype_v019_2=CL:0000148,1.71e-60,10;CL:0000541,1.71e-60,10;CL:0000147,7.49e-43,14;CL:0000710,1.33e-29,20;CL:0002567,4.97e-24,3;CL:0000075,1.41e-21,27;CL:0002077,7.50e-17,34;CL:0002322,6.82e-14,5;CL:0000133,4.65e-13,59;CL:0000333,4.95e-13,41;CL:0000221,1.98e-10,72;CL:0002566,4.52e-09,1 | ||
|ontology_enrichment_uberon=UBERON:0007029;1.42e-08;1!UBERON:0002038;1.42e-08;1!UBERON:0009661;1.42e-08;1!UBERON:0002950;1.42e-08;1!UBERON:0001891;1.42e-08;1 | |ontology_enrichment_development_v019=CL:0000133;1.20e-07;59 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;2.95e-16;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.95e-16,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.00e-43!57;UBERON:0005068!2.00e-43!57;UBERON:0006241!2.00e-43!57;UBERON:0007135!2.00e-43!57;UBERON:0005743!1.79e-38!86;UBERON:0001017!1.44e-36!82;UBERON:0002616!2.02e-36!59;UBERON:0003075!2.30e-34!86;UBERON:0007284!2.30e-34!86;UBERON:0002346!2.50e-34!90;UBERON:0000073!9.77e-34!94;UBERON:0001016!9.77e-34!94;UBERON:0000955!2.57e-31!69;UBERON:0006238!2.57e-31!69;UBERON:0002780!1.39e-29!41;UBERON:0001890!1.39e-29!41;UBERON:0006240!1.39e-29!41;UBERON:0003080!1.02e-28!42;UBERON:0002020!1.45e-28!34;UBERON:0003528!1.45e-28!34;UBERON:0001893!3.08e-28!34;UBERON:0002791!1.00e-26!33;UBERON:0001869!8.61e-25!32;UBERON:0003056!1.27e-24!61;UBERON:0007023!2.47e-24!115;UBERON:0000033!1.65e-21!123;UBERON:0002619!2.05e-21!22;UBERON:0000924!2.07e-21!173;UBERON:0006601!2.07e-21!173;UBERON:0000956!4.85e-21!25;UBERON:0000203!4.85e-21!25;UBERON:0004121!5.19e-21!169;UBERON:0001950!9.82e-21!20;UBERON:0000153!5.43e-20!129;UBERON:0007811!5.43e-20!129;UBERON:0003076!7.37e-16!15;UBERON:0003057!7.37e-16!15;UBERON:0004733!2.79e-13!12;UBERON:0002028!2.79e-13!12;UBERON:0007277!2.79e-13!12;UBERON:0002298!4.21e-13!8;UBERON:0004732!4.02e-12!13;UBERON:0000200!3.88e-09!6;UBERON:0002308!6.10e-09!9;UBERON:0000125!6.10e-09!9;UBERON:0002680!3.42e-08!9;UBERON:0001895!3.42e-08!9;UBERON:0010092!3.42e-08!9;UBERON:0006331!8.09e-08!3;UBERON:0001872!8.32e-08!5;UBERON:0002021!1.05e-07!5;UBERON:0002771!2.37e-07!3;UBERON:0001896!2.43e-07!3;UBERON:0005290!2.43e-07!3;UBERON:0010096!2.43e-07!3;UBERON:0000025!2.46e-07!194;UBERON:0000988!2.84e-07!3;UBERON:0001871!9.42e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0007029;1.42e-08;1!UBERON:0002038;1.42e-08;1!UBERON:0009661;1.42e-08;1!UBERON:0002950;1.42e-08;1!UBERON:0001891;1.42e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007029,1.22e-08,1;UBERON:0002038,1.91e-08,1;UBERON:0009661,1.91e-08,1;UBERON:0002950,1.91e-08,1;UBERON:0001891,1.91e-08,1;UBERON:0009616,1.91e-08,1;UBERON:0010286,1.91e-08,1 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612002073732759,0,0,0.547497700291537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,2.51806559810822,1.62671520017326,0.414644220061482,1.51392510525377,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22988438543114,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,82.1662752140667,115.3605045186,155.899204789362,143.700854659072,104.88404255739,56.1641518168126,172.067512443608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.834912883456661,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0.60298219312704,0,0.110579259931225,0.295547618953547,0.438770794307945,0,0,0,0,0,0.359030577639089,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.404406797884062,0,0.702793337176017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25980740780532,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,1.23214841002794,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0.681017030557878,0.964518890790115,1.10031549277787,1.24632101408756,0,0,0.425246896606173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0.646414781807753,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.500763722825999,0.573409195690071,0.110929051536852,0.745156835296601,0,0,23.9605605715804,25.6918800190471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.967809053062115,0,0.132864840313363,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11542187833102,0,0,0,0,0,0,0.385375350578757,1.41696576325585,0.638535436228605,0.41023272848151,0,0.484100767249525,0.807378228159255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0.781078098613847,0.413373593002368,0.760989722326882,0,0,0.496211178389294,0,0,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.135939465953663,0.657727735628491,0,0,0,0,0,0,0,0,5.00335809236594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.61306097991642,0,0,0,0,1.45713297917742,0,0.397901550322736,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0.588925401344836,0,1.6906229103336,0,0,0,0,0,0,0,0,0,1.14671666521161,1.73548718412503,0.407948941145488,0,0,0,0,0,0,0.546327859818478,0,3.46762021122738,0.534434810531121,0.551369397209069,0,0,0,0,0.724030971033267,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@TBC1D16 | |short_description=p2@TBC1D16 | ||
}} | }} |
Latest revision as of 02:53, 18 September 2015
Short description: | p2@TBC1D16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TBC1D16_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 0bp_to_ENST00000340848, uc002jxh.2, uc002jxi.2, uc002jxk.1_5end |
EntrezGene: | TBC1D16 |
HGNC: | 28356 |
UniProt: | Q8N3Z4Q96DH7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.71e-60 | 10 |
melanoblast | 1.71e-60 | 10 |
pigment cell | 7.49e-43 | 14 |
neurecto-epithelial cell | 1.33e-29 | 20 |
light melanocyte | 4.97e-24 | 3 |
columnar/cuboidal epithelial cell | 1.41e-21 | 27 |
ecto-epithelial cell | 7.50e-17 | 34 |
embryonic stem cell | 6.82e-14 | 5 |
neurectodermal cell | 4.65e-13 | 59 |
migratory neural crest cell | 4.95e-13 | 41 |
ectodermal cell | 1.98e-10 | 72 |
dark melanocyte | 4.52e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
surface | 1.22e-08 | 1 |
substantia nigra | 1.91e-08 | 1 |
midbrain nucleus | 1.91e-08 | 1 |
regional part of midbrain | 1.91e-08 | 1 |
midbrain | 1.91e-08 | 1 |
presumptive midbrain | 1.91e-08 | 1 |
midbrain neural tube | 1.91e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.95e-16 | 2 |