FFCP PHASE1:Hg19::chr3:145940240..145940264,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57088 | |EntrezGene=57088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16497 | |HGNC=16497 | ||
|TSSclassifier=strong | |||
|UniProt=C9J664 | |UniProt=C9J664 | ||
|association_with_transcript=-20bp_to_ENST00000481701_5end | |association_with_transcript=-20bp_to_ENST00000481701_5end | ||
|cluster_id=chr3:145940240..145940264,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_11_at_PLSCR4_5end | |description=CAGE_peak_11_at_PLSCR4_5end | ||
|id=chr3:145940240..145940264,- | |id=chr3:145940240..145940264,- | ||
|ontology_enrichment_celltype=CL:0000182;2.38e-19;12!CL:0000136;2.42e-10;13!CL:0002363;2.57e-08;2 | |ontology_enrichment_celltype=CL:0000181!1.34e-14!12;CL:0000417!1.34e-14!12;CL:0000668!1.34e-14!12;CL:0000414!1.34e-14!12;CL:0000412!1.34e-14!12;CL:0000182!1.34e-14!12;CL:0002541!4.28e-07!3 | ||
| | |ontology_enrichment_celltype_v019=CL:0000182;2.38e-19;12!CL:0000136;2.42e-10;13!CL:0002363;2.57e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.22e-19,12;CL:0000136,5.01e-09,15;CL:0002363,2.67e-08,2;CL:0000008,2.67e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.26e-12;11!UBERON:0009497;1.47e-10;13!CL:0000008;2.57e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002107;6.34e-27;19!UBERON:0006925;6.34e-27;19!UBERON:0002423;1.99e-20;25!UBERON:0002365;1.73e-16;31!UBERON:0002330;1.73e-16;31!UBERON:0000996;2.56e-15;1!UBERON:0002368;4.35e-14;33!UBERON:0000949;1.03e-10;43!UBERON:0003566;2.57e-08;2!UBERON:0001777;2.57e-08;2!UBERON:0005172;1.62e-07;52!UBERON:0005173;1.62e-07;52 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009854!1.91e-16!23;UBERON:0002107!2.53e-15!19;UBERON:0006925!2.53e-15!19;UBERON:0008836!2.53e-15!19;UBERON:0008835!6.01e-15!22;UBERON:0003894!6.01e-15!22;UBERON:0009856!4.24e-14!26;UBERON:0004921!4.31e-14!129;UBERON:0004185!4.31e-14!129;UBERON:0005057!4.73e-14!26;UBERON:0003929!2.36e-13!54;UBERON:0007499!9.90e-13!25;UBERON:0009497!9.90e-13!25;UBERON:0000015!9.90e-13!25;UBERON:0002423!9.90e-13!25;UBERON:0006235!9.90e-13!25;UBERON:0004161!9.90e-13!25;UBERON:0001007!2.75e-12!155;UBERON:0001555!2.75e-12!155;UBERON:0007026!2.75e-12!155;UBERON:0004119!5.19e-12!169;UBERON:0000925!5.19e-12!169;UBERON:0006595!5.19e-12!169;UBERON:0000949!2.65e-11!45;UBERON:0000077!2.73e-11!130;UBERON:0002368!8.53e-11!35;UBERON:0005911!1.73e-10!82;UBERON:0002530!2.27e-09!59;UBERON:0007023!9.26e-09!115;UBERON:0002365!3.43e-08!31;UBERON:0002330!3.43e-08!31;UBERON:0001041!7.57e-08!98;UBERON:0000466!9.95e-08!126;UBERON:0005177!2.23e-07!107;UBERON:0001046!4.19e-07!19;UBERON:0000476!4.28e-07!3;UBERON:0000920!4.28e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;6.34e-27;19!UBERON:0006925;6.34e-27;19!UBERON:0002423;1.99e-20;25!UBERON:0002365;1.73e-16;31!UBERON:0002330;1.73e-16;31!UBERON:0000996;2.56e-15;1!UBERON:0002368;4.35e-14;33!UBERON:0000949;1.03e-10;43!UBERON:0003566;2.57e-08;2!UBERON:0001777;2.57e-08;2!UBERON:0005172;1.62e-07;52!UBERON:0005173;1.62e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.93e-27,19;UBERON:0006925,5.93e-27,19;UBERON:0008836,5.93e-27,19;UBERON:0008835,2.93e-23,22;UBERON:0003894,2.93e-23,22;UBERON:0009854,3.05e-22,23;UBERON:0007499,1.89e-20,25;UBERON:0009497,1.89e-20,25;UBERON:0000015,1.89e-20,25;UBERON:0002423,1.89e-20,25;UBERON:0006235,1.89e-20,25;UBERON:0004161,1.89e-20,25;UBERON:0009856,1.17e-19,26;UBERON:0002365,1.87e-16,31;UBERON:0002330,1.87e-16,31;UBERON:0000996,1.78e-15,1;UBERON:0002368,1.51e-14,35;UBERON:0000949,2.94e-11,45;UBERON:0003929,2.48e-09,54;UBERON:0005172,2.48e-09,54;UBERON:0005173,2.48e-09,54;UBERON:0002530,1.63e-08,59;UBERON:0002417,2.29e-08,60;UBERON:0000916,2.29e-08,60;UBERON:0003566,2.67e-08,2;UBERON:0001777,2.67e-08,2 | |||
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| ||
|short_description=p11@PLSCR4 | |short_description=p11@PLSCR4 | ||
}} | }} |
Latest revision as of 06:43, 25 September 2015
Short description: | p11@PLSCR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_PLSCR4_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -20bp_to_ENST00000481701_5end |
EntrezGene: | PLSCR4 |
HGNC: | 16497 |
UniProt: | C9J664 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.22e-19 | 12 |
fat cell | 5.01e-09 | 15 |
keratocyte | 2.67e-08 | 2 |
migratory cranial neural crest cell | 2.67e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
liver | 5.93e-27 | 19 |
digestive gland | 5.93e-27 | 19 |
liver bud | 5.93e-27 | 19 |
hepatic diverticulum | 2.93e-23 | 22 |
liver primordium | 2.93e-23 | 22 |
digestive tract diverticulum | 3.05e-22 | 23 |
epithelial sac | 1.89e-20 | 25 |
epithelium of foregut-midgut junction | 1.89e-20 | 25 |
anatomical boundary | 1.89e-20 | 25 |
hepatobiliary system | 1.89e-20 | 25 |
foregut-midgut junction | 1.89e-20 | 25 |
septum transversum | 1.89e-20 | 25 |
sac | 1.17e-19 | 26 |
exocrine gland | 1.87e-16 | 31 |
exocrine system | 1.87e-16 | 31 |
vagina | 1.78e-15 | 1 |
endocrine gland | 1.51e-14 | 35 |
endocrine system | 2.94e-11 | 45 |
gut epithelium | 2.48e-09 | 54 |
abdomen element | 2.48e-09 | 54 |
abdominal segment element | 2.48e-09 | 54 |
gland | 1.63e-08 | 59 |
abdominal segment of trunk | 2.29e-08 | 60 |
abdomen | 2.29e-08 | 60 |
head connective tissue | 2.67e-08 | 2 |
substantia propria of cornea | 2.67e-08 | 2 |