FFCP PHASE1:Hg19::chr4:152086796..152086808,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=152503 | |EntrezGene=152503 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=30418 | |HGNC=30418 | ||
|TSSclassifier=strong | |||
|UniProt=B3KS04 | |UniProt=B3KS04 | ||
|association_with_transcript=44bp_to_AK092528_5end | |association_with_transcript=44bp_to_AK092528_5end | ||
|cluster_id=chr4:152086796..152086808,- | |||
|description=CAGE_peak_18_at_SH3D19_5end | |description=CAGE_peak_18_at_SH3D19_5end | ||
|id=chr4:152086796..152086808,- | |id=chr4:152086796..152086808,- | ||
|ontology_enrichment_celltype=CL:0002615!7.24e-07!3 | |ontology_enrichment_celltype=CL:0002615!7.24e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002552;2.70e-36;5!CL:0002556;3.57e-30;6!CL:0002615;6.56e-08;3 | |ontology_enrichment_celltype_v019=CL:0002552;2.70e-36;5!CL:0002556;3.57e-30;6!CL:0002615;6.56e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002552,3.25e-36,5;CL:0002556,2.78e-30,6;CL:0000057,2.50e-09,76;CL:0002615,8.29e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.69e-21;1!UBERON:0003056;6.56e-08;3 | |ontology_enrichment_development_v019=UBERON:0000358;1.69e-21;1!UBERON:0003056;6.56e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.99e-08!115 | |ontology_enrichment_uberon=UBERON:0007023!3.99e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001758;3.57e-30;6!UBERON:0003672;3.57e-30;6!UBERON:0003129;5.53e-26;7!UBERON:0000165;2.33e-25;28!UBERON:0001828;5.33e-23;8!UBERON:0001444;2.55e-17;48!UBERON:0011137;8.11e-17;11!UBERON:0010323;8.11e-17;11!UBERON:0000033;1.69e-15;50!UBERON:0007811;1.85e-14;52!UBERON:0003729;1.94e-14;13!UBERON:0000153;2.65e-12;54!UBERON:0000075;8.88e-12;16!UBERON:0000007;3.18e-11;2!UBERON:0000161;4.37e-10;19!UBERON:0000166;4.37e-10;19!UBERON:0000344;1.30e-09;20!UBERON:0001555;4.45e-08;54 | |ontology_enrichment_uberon_v019=UBERON:0001758;3.57e-30;6!UBERON:0003672;3.57e-30;6!UBERON:0003129;5.53e-26;7!UBERON:0000165;2.33e-25;28!UBERON:0001828;5.33e-23;8!UBERON:0001444;2.55e-17;48!UBERON:0011137;8.11e-17;11!UBERON:0010323;8.11e-17;11!UBERON:0000033;1.69e-15;50!UBERON:0007811;1.85e-14;52!UBERON:0003729;1.94e-14;13!UBERON:0000153;2.65e-12;54!UBERON:0000075;8.88e-12;16!UBERON:0000007;3.18e-11;2!UBERON:0000161;4.37e-10;19!UBERON:0000166;4.37e-10;19!UBERON:0000344;1.30e-09;20!UBERON:0001555;4.45e-08;54 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001758,2.78e-30,6;UBERON:0003672,2.78e-30,6;UBERON:0003129,4.47e-26,7;UBERON:0000165,1.67e-24,29;UBERON:0000930,1.67e-24,29;UBERON:0001828,5.97e-23,8;UBERON:0001444,1.41e-19,49;UBERON:0000033,4.12e-17,56;UBERON:0010323,7.09e-17,11;UBERON:0000153,1.94e-15,62;UBERON:0007811,1.94e-15,62;UBERON:0003729,2.08e-14,13;UBERON:0011137,2.07e-13,14;UBERON:0000075,8.10e-12,16;UBERON:0000007,2.47e-11,2;UBERON:0000344,1.36e-09,20;UBERON:0000166,8.94e-09,22;UBERON:0003102,3.99e-07,99;UBERON:0004121,6.50e-07,171;UBERON:0000924,6.50e-07,171;UBERON:0006601,6.50e-07,171 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0.263766978228454,0,0.662794751455832,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0.605429710579726,0,0,0,0,0,0,0,0,2.04154171254893,1.10550885580591,1.75653827998801,0,0,0,0,1.85169725349473,1.12606667884768,1.6623846929051,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571481048629521,0,0,0,0,0,0.571652865261156,0.224262168690721,0,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0,0.280660094433074,0,0,0,0,0,0,0,0,0.232420756919918,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0.315222829196793,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.314408610199332,0,0.496166021811951,0,0,0,0,0.2506898940227,0.919036730290385,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0.161475645631851,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,1.82089681270989,0.227662191351298,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.549451649953598,0,0,0,0,0,1.57248397188644,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0.0679914901909147,0,0,0,0,0.432626562123789,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0.0673520530145875,0.215166616178029,0,0,0.106727345877715,0,0,2.34640942403454,0.366724332548599,0,0,0,0 | |phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0.263766978228454,0,0.662794751455832,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0.605429710579726,0,0,0,0,0,0,0,0,2.04154171254893,1.10550885580591,1.75653827998801,0,0,0,0,1.85169725349473,1.12606667884768,1.6623846929051,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571481048629521,0,0,0,0,0,0.571652865261156,0.224262168690721,0,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0,0.280660094433074,0,0,0,0,0,0,0,0,0.232420756919918,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0.315222829196793,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.314408610199332,0,0.496166021811951,0,0,0,0,0.2506898940227,0.919036730290385,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0.161475645631851,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,1.82089681270989,0.227662191351298,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.549451649953598,0,0,0,0,0,1.57248397188644,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0.0679914901909147,0,0,0,0,0.432626562123789,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0.0673520530145875,0.215166616178029,0,0,0.106727345877715,0,0,2.34640942403454,0.366724332548599,0,0,0,0 | ||
|short_description=p18@SH3D19 | |short_description=p18@SH3D19 | ||
}} | }} |
Latest revision as of 02:29, 16 September 2015
Short description: | p18@SH3D19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_SH3D19_5end |
Coexpression cluster: | NA |
Association with transcript: | 44bp_to_AK092528_5end |
EntrezGene: | SH3D19 |
HGNC: | 30418 |
UniProt: | B3KS04 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of gingiva | 3.25e-36 | 5 |
fibroblast of periodontium | 2.78e-30 | 6 |
fibroblast | 2.50e-09 | 76 |
adipocyte of omentum tissue | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
periodontium | 2.78e-30 | 6 |
dentition | 2.78e-30 | 6 |
skull | 4.47e-26 | 7 |
mouth | 1.67e-24 | 29 |
stomodeum | 1.67e-24 | 29 |
gingiva | 5.97e-23 | 8 |
subdivision of head | 1.41e-19 | 49 |
head | 4.12e-17 | 56 |
cranial skeletal system | 7.09e-17 | 11 |
anterior region of body | 1.94e-15 | 62 |
craniocervical region | 1.94e-15 | 62 |
mouth mucosa | 2.08e-14 | 13 |
axial skeletal system | 2.07e-13 | 14 |
subdivision of skeletal system | 8.10e-12 | 16 |
pituitary gland | 2.47e-11 | 2 |
mucosa | 1.36e-09 | 20 |
oral opening | 8.94e-09 | 22 |
surface structure | 3.99e-07 | 99 |
ectoderm-derived structure | 6.50e-07 | 171 |
ectoderm | 6.50e-07 | 171 |
presumptive ectoderm | 6.50e-07 | 171 |