FFCP PHASE1:Hg19::chr21:17566643..17566671,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=388815 | |EntrezGene=388815 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=1274 | |HGNC=1274 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-27bp_to_ENST00000419952,NR_027791,uc002ykc.2_5end | |association_with_transcript=-27bp_to_ENST00000419952,NR_027791,uc002ykc.2_5end | ||
|cluster_id=chr21:17566643..17566671,+ | |||
|coexpression_cluster_id=C4066 | |coexpression_cluster_id=C4066 | ||
|description=CAGE_peak_9_at_LINC00478_5end | |description=CAGE_peak_9_at_LINC00478_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0002504,7.57e-07,3;CL:1000279,7.57e-07,3;CL:1000280,7.57e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.23e-11!659;UBERON:0007023!2.06e-11!115;UBERON:0000467!4.81e-10!625;UBERON:0000480!6.69e-10!626;UBERON:0001017!1.46e-09!82;UBERON:0005743!1.48e-09!86;UBERON:0000062!3.06e-09!511;UBERON:0000955!1.10e-08!69;UBERON:0006238!1.10e-08!69;UBERON:0000153!1.10e-08!129;UBERON:0007811!1.10e-08!129;UBERON:0000033!1.61e-08!123;UBERON:0000922!3.59e-08!612;UBERON:0000073!4.13e-08!94;UBERON:0001016!4.13e-08!94;UBERON:0000479!4.36e-08!787;UBERON:0002050!5.44e-08!605;UBERON:0005423!5.44e-08!605;UBERON:0002616!7.40e-08!59;UBERON:0003075!7.78e-08!86;UBERON:0007284!7.78e-08!86;UBERON:0000923!1.19e-07!604;UBERON:0005291!1.19e-07!604;UBERON:0006598!1.19e-07!604;UBERON:0002532!1.19e-07!604;UBERON:0000475!1.93e-07!365;UBERON:0001049!2.88e-07!57;UBERON:0005068!2.88e-07!57;UBERON:0006241!2.88e-07!57;UBERON:0007135!2.88e-07!57;UBERON:0002346!4.34e-07!90 | |ontology_enrichment_uberon=UBERON:0000468!1.23e-11!659;UBERON:0007023!2.06e-11!115;UBERON:0000467!4.81e-10!625;UBERON:0000480!6.69e-10!626;UBERON:0001017!1.46e-09!82;UBERON:0005743!1.48e-09!86;UBERON:0000062!3.06e-09!511;UBERON:0000955!1.10e-08!69;UBERON:0006238!1.10e-08!69;UBERON:0000153!1.10e-08!129;UBERON:0007811!1.10e-08!129;UBERON:0000033!1.61e-08!123;UBERON:0000922!3.59e-08!612;UBERON:0000073!4.13e-08!94;UBERON:0001016!4.13e-08!94;UBERON:0000479!4.36e-08!787;UBERON:0002050!5.44e-08!605;UBERON:0005423!5.44e-08!605;UBERON:0002616!7.40e-08!59;UBERON:0003075!7.78e-08!86;UBERON:0007284!7.78e-08!86;UBERON:0000923!1.19e-07!604;UBERON:0005291!1.19e-07!604;UBERON:0006598!1.19e-07!604;UBERON:0002532!1.19e-07!604;UBERON:0000475!1.93e-07!365;UBERON:0001049!2.88e-07!57;UBERON:0005068!2.88e-07!57;UBERON:0006241!2.88e-07!57;UBERON:0007135!2.88e-07!57;UBERON:0002346!4.34e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.60e-08;9!UBERON:0001557;1.60e-08;9!UBERON:0003296;1.93e-07;4!UBERON:0010133;1.93e-07;4!UBERON:0006947;3.01e-07;3!UBERON:0004054;3.01e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001737;1.60e-08;9!UBERON:0001557;1.60e-08;9!UBERON:0003296;1.93e-07;4!UBERON:0010133;1.93e-07;4!UBERON:0006947;3.01e-07;3!UBERON:0004054;3.01e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.51e-09,9;UBERON:0006947,2.50e-07,3;UBERON:0004054,2.50e-07,3;UBERON:0003296,3.28e-07,4;UBERON:0010133,3.28e-07,4 | |||
|phase1_expression=0.726713517082227,0.856402095563933,0.422863212287913,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.246242116153576,0,0.940364164434263,3.43483184557268,1.77936752594749,1.63205431473244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,1.80719576192283,0.50133791063589,0.434539556882471,0,0.486634870302636,1.13441780596881,0,0.263504357079378,1.24430121722827,0,0.370784442784429,0.97364218096405,0.174129737299267,0.797747763113191,0.238490624305342,0,0,0,0,0.347140501607594,0,0,0,0,0.775250277507987,1.06729878806013,0,0,0,0,0,0,2.32179293538607,0.673588117878509,0.675668882899933,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0.132409180813219,2.0078563452417,0,0,0,0,0.311211035399766,0.538842688278752,0.163461903113459,0.454072282934794,4.60940739583999,0.70296429550139,0.312160076830321,0,0.149448680551801,0.352303495931295,0,0.140450806702248,0,0.61417158655884,0.103325781175765,0,0,0,0,0.505008341862199,1.50142223846357,0,0,0.30648779579902,0.150238058906597,0.113432183160021,0.358779271377724,0.427114777637135,2.11931901159562,0.600182192168805,0.618315175430633,2.57640540045629,0.37223371266318,0.168776332241266,0.292311015483596,0.504867548488229,1.65689817556139,1.2931684545505,0.710019185033229,0,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,1.56449532329816,0,0,0,0,1.77460200059766,1.85443159085912,0.241011029883482,1.10293972732394,1.96091499683166,0.474541238222193,1.48314438976181,1.17732879075208,2.30848294167834,0,1.40241773803446,1.2347220339942,0,0,0,0,0,0,0.171567810298526,0,0,0,0.277765335475589,0,2.07986957055916,0,0.115930404975077,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,1.17587489739202,0.283550194484773,0,0,0,0,0.792435906119034,0.621984346622316,1.00883967391873,0.75745460055828,0,0,0,0,0,0,0,0.784917590417525,0,0.22001485746285,0.517086863031111,0,0,0.26593811658487,1.04007436911366,0,1.41849132023278,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0.099972991182057,0,0.502257091432126,0,0.958499421966331,0,0,0.144781306667579,1.2328579353023,0.179060963239896,0,0,0,0,1.01637849688985,2.60279707715243,0,0.502548796003046,0,0,0,0,0.858840442033979,0,0,0,0,0,0.468565659970853,0.300946099727719,0,1.03473071292505,0,0.553107505625109,3.99664626553181,0,0.343143423810856,0,0,0,0,0,0,0,1.53461973288062,0.841980283299221,0,0,0.482561763430822,0,0.616838775210622,0.177561725313127,0.246381468041427,0,0.232420756919918,0,0,0.276242966807689,0.459257792658427,2.00300284807389,2.09799063935079,0,0,0,0,0,0,0.510281115829547,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0.325378394664303,0.309123034943167,0.27470839445503,0.082509499920588,0,0,0,0.48335359146061,0.616194468458578,0.15350367472613,0.551346289938122,5.58585273315023,2.17525040871343,1.61930592090592,0.623224249527161,1.15699440752685,1.53752053892085,2.67986696238627,0.30347334256665,0,1.5740617341532,0,0.308033580176089,0,0,0,0,0.744316738719335,0.632758849437452,0.953150969619124,0.255897791311334,2.1396949401696,0,0,4.31693898199955,3.84351841630477,1.64937363283961,0,0,0,0.48763373908959,0.974853958525138,0,0.272999822815972,0.707027159768564,0,0,0,0,0,0.655894752046633,0.202910376962704,0,0,0.430234056612155,0.589494246078727,0,0.709522128141196,0.633322905892992,0.329294892959902,0.379473173765715,1.04980416073495,0.192444225451024,0,0,0.753150406214233,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.427296284509893,0.962479855263359,0.245040215981032,0,0.144269212976445,0,0,0,0,0.635020748171649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,0,0,0.586032717087576,2.42721043499027,0,0,0,0,0,0,1.96937182974718,0.111308705022906,0,0,1.59398390600856,0.828851746593443,0,0,0,0,0,0,0,0.493217028184668,0,0,0.969332746095218,0.0927680981618513,1.99613798001194,0,0,0,0,0,0,0,0.291604613383254,0,0,1.80894657938112,0,0,0,0.438770794307945,0.32681539055697,0,8.61842895242527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476809736941136,0,0,0,0,0.995261931078505,0.176915129006678,0.611030144933625,0,0,0,0.269604531922708,1.60515529459758,0,0,0.19566461893209,0,6.31335044559025,0,0.61214552326098,0.568679216656392,0.300646838828985,0.207376382794494,0,0.330991955875499,0,0,0,0.138674673013139,0,0,0,2.79562669187248,0,2.70917727609438,2.55812609801649,3.69519556739442,0.581934098930517,3.44198894096851,1.35588444468319,0,0,0.189932387867636,0,0,0.85381197895741,0,0,0.572682980829578,0,0.14405479798815,0,0,0.135904206073614,0.104602846312333,0.305994652908965,0.866851769704557,0.600420288709789,0.684526894459965,0,0,0,1.95497680890578,0.916641696046735,0.717873024576814,0,0,0.446342914883745,0.268733889946905,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.817220436669454,0,0,0,1.5748172408605,1.5476039091159,0.3037477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| ||
|short_description=p9@LINC00478 | |short_description=p9@LINC00478 | ||
}} | }} |
Latest revision as of 19:36, 17 September 2015
Short description: | p9@LINC00478 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LINC00478_5end |
Coexpression cluster: | C4066_uterus_cervix_seminal_medulloblastoma_Skeletal_ductus_epitheloid |
Association with transcript: | -27bp_to_ENST00000419952, NR_027791, uc002ykc.2_5end |
EntrezGene: | LINC00478 |
HGNC: | 1274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 7.57e-07 | 3 |
smooth muscle cell of large intestine | 7.57e-07 | 3 |
smooth muscle cell of colon | 7.57e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.51e-09 | 9 |
male genital duct | 2.50e-07 | 3 |
internal male genitalia | 2.50e-07 | 3 |
gland of diencephalon | 3.28e-07 | 4 |
neuroendocrine gland | 3.28e-07 | 4 |