FFCP PHASE1:Hg19::chr19:6711107..6711132,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=718 | |EntrezGene=718 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1318 | |HGNC=1318 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-139bp_to_ENST00000466344_5end | |association_with_transcript=-139bp_to_ENST00000466344_5end | ||
|cluster_id=chr19:6711107..6711132,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_13_at_C3_5end | |description=CAGE_peak_13_at_C3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000077!5.97e-07!19 | |ontology_enrichment_celltype=CL:0000077!5.97e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.33e-14;12 | |ontology_enrichment_celltype_v019=CL:0000182;2.33e-14;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.78e-14,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.34e-15;11!UBERON:0009497;6.65e-13;13 | |ontology_enrichment_development_v019=UBERON:0004161;2.34e-15;11!UBERON:0009497;6.65e-13;13 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.96e-21!115;UBERON:0000477!6.26e-09!286;UBERON:0004111!7.37e-09!241;UBERON:0000481!8.38e-09!347;UBERON:0002368!1.59e-07!35;UBERON:0000025!2.00e-07!194;UBERON:0009497!4.78e-07!25;UBERON:0000015!4.78e-07!25;UBERON:0002423!4.78e-07!25;UBERON:0006235!4.78e-07!25;UBERON:0004161!4.78e-07!25 | |ontology_enrichment_uberon=UBERON:0007023!9.96e-21!115;UBERON:0000477!6.26e-09!286;UBERON:0004111!7.37e-09!241;UBERON:0000481!8.38e-09!347;UBERON:0002368!1.59e-07!35;UBERON:0000025!2.00e-07!194;UBERON:0009497!4.78e-07!25;UBERON:0000015!4.78e-07!25;UBERON:0002423!4.78e-07!25;UBERON:0006235!4.78e-07!25;UBERON:0004161!4.78e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.15e-15;19!UBERON:0006925;1.15e-15;19!UBERON:0002423;1.49e-14;25!UBERON:0002365;1.36e-08;31!UBERON:0002330;1.36e-08;31!UBERON:0002368;5.96e-08;33!UBERON:0004151;1.75e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0002107;1.15e-15;19!UBERON:0006925;1.15e-15;19!UBERON:0002423;1.49e-14;25!UBERON:0002365;1.36e-08;31!UBERON:0002330;1.36e-08;31!UBERON:0002368;5.96e-08;33!UBERON:0004151;1.75e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,9.23e-16,19;UBERON:0006925,9.23e-16,19;UBERON:0008836,9.23e-16,19;UBERON:0009497,1.19e-14,25;UBERON:0000015,1.19e-14,25;UBERON:0002423,1.19e-14,25;UBERON:0006235,1.19e-14,25;UBERON:0004161,1.19e-14,25;UBERON:0008835,1.96e-13,22;UBERON:0003894,1.96e-13,22;UBERON:0009854,8.59e-13,23;UBERON:0007499,1.15e-11,25;UBERON:0009856,3.64e-11,26;UBERON:0002365,3.73e-09,31;UBERON:0002330,3.73e-09,31;UBERON:0005172,7.03e-09,54;UBERON:0005173,7.03e-09,54;UBERON:0003914,3.25e-08,117;UBERON:0002368,5.82e-08,35;UBERON:0002417,8.83e-08,60;UBERON:0000916,8.83e-08,60;UBERON:0005256,9.14e-08,122;UBERON:0004151,1.75e-07,3;UBERON:0003929,2.65e-07,54 | |||
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| ||
|short_description=p13@C3 | |short_description=p13@C3 | ||
}} | }} |
Latest revision as of 18:11, 24 September 2015
Short description: | p13@C3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_C3_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -139bp_to_ENST00000466344_5end |
EntrezGene: | C3 |
HGNC: | 1318 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.78e-14 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 9.23e-16 | 19 |
digestive gland | 9.23e-16 | 19 |
liver bud | 9.23e-16 | 19 |
epithelium of foregut-midgut junction | 1.19e-14 | 25 |
anatomical boundary | 1.19e-14 | 25 |
hepatobiliary system | 1.19e-14 | 25 |
foregut-midgut junction | 1.19e-14 | 25 |
septum transversum | 1.19e-14 | 25 |
hepatic diverticulum | 1.96e-13 | 22 |
liver primordium | 1.96e-13 | 22 |
digestive tract diverticulum | 8.59e-13 | 23 |
epithelial sac | 1.15e-11 | 25 |
sac | 3.64e-11 | 26 |
exocrine gland | 3.73e-09 | 31 |
exocrine system | 3.73e-09 | 31 |
abdomen element | 7.03e-09 | 54 |
abdominal segment element | 7.03e-09 | 54 |
epithelial tube | 3.25e-08 | 117 |
endocrine gland | 5.82e-08 | 35 |
abdominal segment of trunk | 8.83e-08 | 60 |
abdomen | 8.83e-08 | 60 |
trunk mesenchyme | 9.14e-08 | 122 |
cardiac chamber | 1.75e-07 | 3 |
gut epithelium | 2.65e-07 | 54 |