FFCP PHASE1:Hg19::chr1:197889151..197889159,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:197889151..197889159,+ | |||
|coexpression_cluster_id=C2547 | |coexpression_cluster_id=C2547 | ||
|description=CAGE_peak_at_chr1:197889151..197889159,+ | |description=CAGE_peak_at_chr1:197889151..197889159,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002620!2.36e-33!23;CL:0000242!2.40e-10!2;CL:0000057!1.07e-09!75 | |ontology_enrichment_celltype=CL:0002620!2.36e-33!23;CL:0000242!2.40e-10!2;CL:0000057!1.07e-09!75 | ||
|ontology_enrichment_celltype_v019=CL:0002620;4.54e-38;23!CL:0000511;3.56e-19;1!CL:0002625;3.56e-19;1!CL:0000216;3.56e-19;1!CL:0000057;4.99e-07;73 | |ontology_enrichment_celltype_v019=CL:0002620;4.54e-38;23!CL:0000511;3.56e-19;1!CL:0002625;3.56e-19;1!CL:0000216;3.56e-19;1!CL:0000057;4.99e-07;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.55e-38,23;CL:0000511,2.71e-19,1;CL:0002625,2.71e-19,1;CL:0000216,2.71e-19,1;CL:0000057,2.32e-11,76 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!8.39e-25!5;DOID:450!8.39e-25!5;DOID:66!8.39e-25!5;DOID:423!8.39e-25!5;DOID:0080000!8.39e-25!5;DOID:11722!8.39e-25!5;DOID:154!1.42e-10!2;DOID:4236!1.42e-10!2;DOID:169!2.35e-07!6 | |ontology_enrichment_disease=DOID:17!8.39e-25!5;DOID:450!8.39e-25!5;DOID:66!8.39e-25!5;DOID:423!8.39e-25!5;DOID:0080000!8.39e-25!5;DOID:11722!8.39e-25!5;DOID:154!1.42e-10!2;DOID:4236!1.42e-10!2;DOID:169!2.35e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:17;3.10e-33;5!DOID:450;3.10e-33;5!DOID:66;3.10e-33;5!DOID:423;3.10e-33;5!DOID:0080000;3.10e-33;5!DOID:11722;3.10e-33;5!DOID:3371;1.42e-19;1!DOID:4549;1.42e-19;1!DOID:5861;1.42e-19;1!DOID:6496;1.42e-19;1 | |ontology_enrichment_disease_v019=DOID:17;3.10e-33;5!DOID:450;3.10e-33;5!DOID:66;3.10e-33;5!DOID:423;3.10e-33;5!DOID:0080000;3.10e-33;5!DOID:11722;3.10e-33;5!DOID:3371;1.42e-19;1!DOID:4549;1.42e-19;1!DOID:5861;1.42e-19;1!DOID:6496;1.42e-19;1 | ||
|ontology_enrichment_disease_v019_2=DOID:17,3.86e-33,5;DOID:450,3.86e-33,5;DOID:66,3.86e-33,5;DOID:423,3.86e-33,5;DOID:0080000,3.86e-33,5;DOID:11722,3.86e-33,5;DOID:3371,1.08e-19,1;DOID:4549,1.08e-19,1;DOID:5861,1.08e-19,1;DOID:6496,1.08e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0002097!1.87e-27!40;UBERON:0002199!5.45e-24!45;UBERON:0002416!5.45e-24!45;UBERON:0003102!1.85e-09!95;UBERON:0000013!9.73e-09!5;UBERON:0002410!9.73e-09!5 | |ontology_enrichment_uberon=UBERON:0002097!1.87e-27!40;UBERON:0002199!5.45e-24!45;UBERON:0002416!5.45e-24!45;UBERON:0003102!1.85e-09!95;UBERON:0000013!9.73e-09!5;UBERON:0002410!9.73e-09!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0001136;3.56e-19;1!UBERON:0001343;3.56e-19;1!UBERON:0004910;3.56e-19;1!UBERON:0004813;3.56e-19;1!UBERON:0002097;7.44e-18;41!UBERON:0002199;1.65e-11;46!UBERON:0002416;1.65e-11;46!UBERON:0003102;3.88e-11;50!UBERON:0004909;2.85e-10;2!UBERON:0002418;2.12e-07;3!UBERON:0004755;2.12e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001136;3.56e-19;1!UBERON:0001343;3.56e-19;1!UBERON:0004910;3.56e-19;1!UBERON:0004813;3.56e-19;1!UBERON:0002097;7.44e-18;41!UBERON:0002199;1.65e-11;46!UBERON:0002416;1.65e-11;46!UBERON:0003102;3.88e-11;50!UBERON:0004909;2.85e-10;2!UBERON:0002418;2.12e-07;3!UBERON:0004755;2.12e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.71e-21,41;UBERON:0001136,2.71e-19,1;UBERON:0001343,2.71e-19,1;UBERON:0004910,2.71e-19,1;UBERON:0005154,2.71e-19,1;UBERON:0005295,2.71e-19,1;UBERON:0004813,2.71e-19,1;UBERON:0005297,2.71e-19,1;UBERON:0005294,2.71e-19,1;UBERON:0010141,2.71e-19,1;UBERON:0005891,2.71e-19,1;UBERON:0002199,5.89e-19,46;UBERON:0002416,5.89e-19,46;UBERON:0004909,2.49e-10,2;UBERON:0003102,1.23e-08,99;UBERON:0002418,1.93e-07,3;UBERON:0004755,1.93e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40840307808838,2.34913127700424,0.423863802319124,0.900273288253207,1.13357782162283,0.772921620136887,2.23340227597908,0,0.194874010322397,1.51460264546469,0.460249493211497,0,2.4850671476163,1.71278566986988,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.868124974666461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,2.73593992743651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0.313808538937,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09642024789354,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0.109209638192014,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40840307808838,2.34913127700424,0.423863802319124,0.900273288253207,1.13357782162283,0.772921620136887,2.23340227597908,0,0.194874010322397,1.51460264546469,0.460249493211497,0,2.4850671476163,1.71278566986988,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.868124974666461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,2.73593992743651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0.313808538937,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09642024789354,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0.109209638192014,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:197889151..197889159,+ | |short_description=p@chr1:197889151..197889159,+ | ||
}} | }} |
Latest revision as of 01:52, 28 July 2015
Short description: | p@chr1:197889151..197889159, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:197889151..197889159, + |
Coexpression cluster: | C2547_extraskeletal_Fibroblast_glioblastoma_Sertoli_mesothelioma_hepatoma_neuroepithelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.55e-38 | 23 |
androgen binding protein secreting cell | 2.71e-19 | 1 |
seminiferous tubule epithelial cell | 2.71e-19 | 1 |
Sertoli cell | 2.71e-19 | 1 |
fibroblast | 2.32e-11 | 76 |
Ontology term | p-value | n |
---|---|---|
skin of body | 2.71e-21 | 41 |
mesothelium | 2.71e-19 | 1 |
seminiferous tubule of testis | 2.71e-19 | 1 |
epithelium of male gonad | 2.71e-19 | 1 |
epithelial cord | 2.71e-19 | 1 |
sex cord | 2.71e-19 | 1 |
seminiferous tubule epithelium | 2.71e-19 | 1 |
testis sex cord | 2.71e-19 | 1 |
genital ridge | 2.71e-19 | 1 |
primitive sex cord of indifferent gonad | 2.71e-19 | 1 |
coelomic epithelium | 2.71e-19 | 1 |
integument | 5.89e-19 | 46 |
integumental system | 5.89e-19 | 46 |
epithelium of gonad | 2.49e-10 | 2 |
surface structure | 1.23e-08 | 99 |
cartilage tissue | 1.93e-07 | 3 |
skeletal tissue | 1.93e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.86e-33 | 5 |
myotonic disease | 3.86e-33 | 5 |
muscle tissue disease | 3.86e-33 | 5 |
myopathy | 3.86e-33 | 5 |
muscular disease | 3.86e-33 | 5 |
myotonic dystrophy | 3.86e-33 | 5 |
chondrosarcoma | 1.08e-19 | 1 |
extraosseous chondrosarcoma | 1.08e-19 | 1 |
myxoid chondrosarcoma | 1.08e-19 | 1 |
extraskeletal myxoid chondrosarcoma | 1.08e-19 | 1 |