FFCP PHASE1:Hg19::chr17:46622175..46622186,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3212 | |EntrezGene=3212 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5113 | |HGNC=5113 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-159bp_to_ENST00000326226_5end | |association_with_transcript=-159bp_to_ENST00000326226_5end | ||
|cluster_id=chr17:46622175..46622186,- | |||
|description=CAGE_peak_12_at_HOXB2_5end | |description=CAGE_peak_12_at_HOXB2_5end | ||
|id=chr17:46622175..46622186,- | |id=chr17:46622175..46622186,- | ||
|ontology_enrichment_celltype=CL:0000222!1.35e-10!119;CL:1000507!3.69e-09!12;CL:1000494!3.69e-09!12;CL:1000449!1.09e-07!16;CL:1000497!2.49e-07!18;CL:0002518!2.49e-07!18 | |ontology_enrichment_celltype=CL:0000222!1.35e-10!119;CL:1000507!3.69e-09!12;CL:1000494!3.69e-09!12;CL:1000449!1.09e-07!16;CL:1000497!2.49e-07!18;CL:0002518!2.49e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.07e-16;10!CL:1000494;1.07e-16;10!CL:1000497;2.93e-12;17!CL:0002518;2.93e-12;17!CL:1000449;3.49e-12;15!CL:0002681;2.74e-08;12!CL:0002584;2.74e-08;12 | |ontology_enrichment_celltype_v019=CL:1000507;1.07e-16;10!CL:1000494;1.07e-16;10!CL:1000497;2.93e-12;17!CL:0002518;2.93e-12;17!CL:1000449;3.49e-12;15!CL:0002681;2.74e-08;12!CL:0002584;2.74e-08;12 | ||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.28e-16,10;CL:1000494,1.28e-16,10;CL:1000449,5.88e-12,15;CL:1000497,6.20e-12,17;CL:0002518,6.20e-12,17;CL:0002681,5.15e-08,12;CL:0002584,5.15e-08,12 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1036;1.48e-07;8!DOID:1115;2.87e-07;20 | |ontology_enrichment_disease_v019=DOID:1036;1.48e-07;8!DOID:1115;2.87e-07;20 | ||
|ontology_enrichment_disease_v019_2=DOID:1115,1.63e-07,20;DOID:1036,1.76e-07,8 | |||
|ontology_enrichment_uberon=UBERON:0003914!8.00e-11!118;UBERON:0002113!2.17e-10!27;UBERON:0003918!2.17e-10!27;UBERON:0005095!2.17e-10!27;UBERON:0007687!2.17e-10!27;UBERON:0001981!1.53e-09!60;UBERON:0007500!1.53e-09!60;UBERON:0004537!1.53e-09!60;UBERON:0006965!1.53e-09!60;UBERON:0009773!3.69e-09!12;UBERON:0001231!3.69e-09!12;UBERON:0004810!3.69e-09!12;UBERON:0000080!2.57e-08!18;UBERON:0002120!2.57e-08!18;UBERON:0004875!2.57e-08!18;UBERON:0005721!2.57e-08!18;UBERON:0005754!2.57e-08!18;UBERON:0007297!2.57e-08!18;UBERON:0001637!3.13e-08!42;UBERON:0003509!3.13e-08!42;UBERON:0004572!3.13e-08!42;UBERON:0006555!5.81e-08!17;UBERON:0005103!5.81e-08!17;UBERON:0000083!5.81e-08!17;UBERON:0009201!5.81e-08!17;UBERON:0004819!5.81e-08!17;UBERON:0006553!5.81e-08!17;UBERON:0003074!5.81e-08!17;UBERON:0003060!5.81e-08!17;UBERON:0000055!7.36e-08!69;UBERON:0000489!8.61e-08!32;UBERON:0004211!1.09e-07!16;UBERON:0001285!1.09e-07!16;UBERON:0007684!1.09e-07!16;UBERON:0003220!1.09e-07!16;UBERON:0004208!1.09e-07!16;UBERON:0000353!1.29e-07!17;UBERON:0004872!1.57e-07!84;UBERON:0003887!1.58e-07!21;UBERON:0004290!2.49e-07!70;UBERON:0000058!3.00e-07!26;UBERON:0005256!3.51e-07!143;UBERON:0000947!6.32e-07!21;UBERON:0010191!6.32e-07!21;UBERON:0004573!6.66e-07!33;UBERON:0004571!6.66e-07!33;UBERON:0004876!8.16e-07!20 | |ontology_enrichment_uberon=UBERON:0003914!8.00e-11!118;UBERON:0002113!2.17e-10!27;UBERON:0003918!2.17e-10!27;UBERON:0005095!2.17e-10!27;UBERON:0007687!2.17e-10!27;UBERON:0001981!1.53e-09!60;UBERON:0007500!1.53e-09!60;UBERON:0004537!1.53e-09!60;UBERON:0006965!1.53e-09!60;UBERON:0009773!3.69e-09!12;UBERON:0001231!3.69e-09!12;UBERON:0004810!3.69e-09!12;UBERON:0000080!2.57e-08!18;UBERON:0002120!2.57e-08!18;UBERON:0004875!2.57e-08!18;UBERON:0005721!2.57e-08!18;UBERON:0005754!2.57e-08!18;UBERON:0007297!2.57e-08!18;UBERON:0001637!3.13e-08!42;UBERON:0003509!3.13e-08!42;UBERON:0004572!3.13e-08!42;UBERON:0006555!5.81e-08!17;UBERON:0005103!5.81e-08!17;UBERON:0000083!5.81e-08!17;UBERON:0009201!5.81e-08!17;UBERON:0004819!5.81e-08!17;UBERON:0006553!5.81e-08!17;UBERON:0003074!5.81e-08!17;UBERON:0003060!5.81e-08!17;UBERON:0000055!7.36e-08!69;UBERON:0000489!8.61e-08!32;UBERON:0004211!1.09e-07!16;UBERON:0001285!1.09e-07!16;UBERON:0007684!1.09e-07!16;UBERON:0003220!1.09e-07!16;UBERON:0004208!1.09e-07!16;UBERON:0000353!1.29e-07!17;UBERON:0004872!1.57e-07!84;UBERON:0003887!1.58e-07!21;UBERON:0004290!2.49e-07!70;UBERON:0000058!3.00e-07!26;UBERON:0005256!3.51e-07!143;UBERON:0000947!6.32e-07!21;UBERON:0010191!6.32e-07!21;UBERON:0004573!6.66e-07!33;UBERON:0004571!6.66e-07!33;UBERON:0004876!8.16e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0002113;9.28e-17;24!UBERON:0011143;9.28e-17;24!UBERON:0004211;1.07e-16;10!UBERON:0009773;1.07e-16;10!UBERON:0001231;1.07e-16;10!UBERON:0004810;1.07e-16;10!UBERON:0000489;5.73e-13;29!UBERON:0006554;2.29e-12;30!UBERON:0001008;2.29e-12;30!UBERON:0006555;3.49e-12;15!UBERON:0004819;3.49e-12;15!UBERON:0001285;3.49e-12;15!UBERON:0007684;3.49e-12;15!UBERON:0000353;7.47e-10;15!UBERON:0001225;2.74e-08;12!UBERON:0008987;2.74e-08;12!UBERON:0003914;2.58e-07;74 | |ontology_enrichment_uberon_v019=UBERON:0002113;9.28e-17;24!UBERON:0011143;9.28e-17;24!UBERON:0004211;1.07e-16;10!UBERON:0009773;1.07e-16;10!UBERON:0001231;1.07e-16;10!UBERON:0004810;1.07e-16;10!UBERON:0000489;5.73e-13;29!UBERON:0006554;2.29e-12;30!UBERON:0001008;2.29e-12;30!UBERON:0006555;3.49e-12;15!UBERON:0004819;3.49e-12;15!UBERON:0001285;3.49e-12;15!UBERON:0007684;3.49e-12;15!UBERON:0000353;7.47e-10;15!UBERON:0001225;2.74e-08;12!UBERON:0008987;2.74e-08;12!UBERON:0003914;2.58e-07;74 | ||
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| ||
|short_description=p12@HOXB2 | |short_description=p12@HOXB2 | ||
}} | }} |
Latest revision as of 06:43, 25 September 2015
Short description: | p12@HOXB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_HOXB2_5end |
Coexpression cluster: | NA |
Association with transcript: | -159bp_to_ENST00000326226_5end |
EntrezGene: | HOXB2 |
HGNC: | 5113 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.28e-16 | 10 |
nephron tubule epithelial cell | 1.28e-16 | 10 |
epithelial cell of nephron | 5.88e-12 | 15 |
kidney cell | 6.20e-12 | 17 |
kidney epithelial cell | 6.20e-12 | 17 |
kidney cortical cell | 5.15e-08 | 12 |
renal cortical epithelial cell | 5.15e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.28e-16 | 10 |
kidney | 1.10e-14 | 26 |
kidney mesenchyme | 1.10e-14 | 26 |
upper urinary tract | 1.10e-14 | 26 |
kidney rudiment | 1.10e-14 | 26 |
kidney field | 1.10e-14 | 26 |
nephron epithelium | 5.88e-12 | 15 |
renal tubule | 5.88e-12 | 15 |
nephron tubule | 5.88e-12 | 15 |
nephron | 5.88e-12 | 15 |
uriniferous tubule | 5.88e-12 | 15 |
nephrogenic mesenchyme | 5.88e-12 | 15 |
cavitated compound organ | 1.67e-11 | 31 |
excretory tube | 5.05e-11 | 16 |
kidney epithelium | 5.05e-11 | 16 |
parenchyma | 1.27e-09 | 15 |
cortex of kidney | 5.15e-08 | 12 |
renal parenchyma | 5.15e-08 | 12 |
epithelial tube | 2.26e-07 | 117 |
abdomen element | 4.58e-07 | 54 |
abdominal segment element | 4.58e-07 | 54 |
urinary system structure | 6.57e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
sarcoma | 1.63e-07 | 20 |
chronic leukemia | 1.76e-07 | 8 |