FFCP PHASE1:Hg19::chr4:3387459..3387478,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6002 | |EntrezGene=6002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9994 | |HGNC=9994 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_ENST00000503041_5end | |association_with_transcript=33bp_to_ENST00000503041_5end | ||
|cluster_id=chr4:3387459..3387478,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_7_at_RGS12_5end | |description=CAGE_peak_7_at_RGS12_5end | ||
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|ontology_enrichment_celltype=CL:0000557!8.50e-20!71;CL:0000839!6.71e-19!70;CL:0000766!1.26e-18!76;CL:0002009!6.75e-18!65;CL:0002194!1.82e-17!63;CL:0000576!1.82e-17!63;CL:0000040!1.82e-17!63;CL:0000559!1.82e-17!63;CL:0002057!2.68e-17!42;CL:0000860!1.58e-15!45;CL:0000066!6.45e-13!254;CL:0002076!6.28e-12!43;CL:0000763!2.21e-11!112;CL:0000049!2.21e-11!112;CL:0000223!3.30e-10!59;CL:0002077!6.20e-10!33;CL:0002251!1.20e-09!21;CL:0000076!1.84e-07!62;CL:0002159!2.30e-07!13;CL:0000148!3.17e-07!10;CL:0000541!3.17e-07!10 | |ontology_enrichment_celltype=CL:0000557!8.50e-20!71;CL:0000839!6.71e-19!70;CL:0000766!1.26e-18!76;CL:0002009!6.75e-18!65;CL:0002194!1.82e-17!63;CL:0000576!1.82e-17!63;CL:0000040!1.82e-17!63;CL:0000559!1.82e-17!63;CL:0002057!2.68e-17!42;CL:0000860!1.58e-15!45;CL:0000066!6.45e-13!254;CL:0002076!6.28e-12!43;CL:0000763!2.21e-11!112;CL:0000049!2.21e-11!112;CL:0000223!3.30e-10!59;CL:0002077!6.20e-10!33;CL:0002251!1.20e-09!21;CL:0000076!1.84e-07!62;CL:0002159!2.30e-07!13;CL:0000148!3.17e-07!10;CL:0000541!3.17e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000148;9.58e-20;10!CL:0002077;2.04e-17;34!CL:0000147;8.49e-14;14!CL:0002567;1.33e-13;3!CL:0000622;1.67e-13;5!CL:0002623;1.77e-13;3!CL:0000710;5.60e-12;20!CL:0000150;1.89e-11;9!CL:0000154;2.93e-11;6!CL:0002159;2.74e-09;14!CL:0000575;1.61e-08;2!CL:0000075;1.63e-08;27!CL:0002368;1.81e-07;13!CL:0002076;3.41e-07;42!CL:0002251;9.34e-07;20 | |ontology_enrichment_celltype_v019=CL:0000148;9.58e-20;10!CL:0002077;2.04e-17;34!CL:0000147;8.49e-14;14!CL:0002567;1.33e-13;3!CL:0000622;1.67e-13;5!CL:0002623;1.77e-13;3!CL:0000710;5.60e-12;20!CL:0000150;1.89e-11;9!CL:0000154;2.93e-11;6!CL:0002159;2.74e-09;14!CL:0000575;1.61e-08;2!CL:0000075;1.63e-08;27!CL:0002368;1.81e-07;13!CL:0002076;3.41e-07;42!CL:0002251;9.34e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002077,4.80e-20,34;CL:0000148,7.86e-20,10;CL:0000541,7.86e-20,10;CL:0000147,7.39e-14,14;CL:0000622,1.09e-13,5;CL:0002567,1.37e-13,3;CL:0002623,1.42e-13,3;CL:0000066,5.93e-13,253;CL:0000710,5.68e-12,20;CL:0000150,1.41e-11,9;CL:0000154,2.06e-11,6;CL:0002159,1.60e-09,14;CL:0002076,2.21e-09,42;CL:0000223,9.13e-09,58;CL:0002321,1.52e-08,250;CL:0000575,1.62e-08,2;CL:0000075,1.64e-08,27;CL:0000557,8.86e-08,67;CL:0000221,1.66e-07,72;CL:0002009,1.74e-07,61;CL:0000473,2.32e-07,48;CL:0000234,2.32e-07,48;CL:0002368,2.44e-07,13;CL:0002251,6.89e-07,20;CL:0000839,9.87e-07,66 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!9.84e-10!14 | |ontology_enrichment_disease=DOID:1749!9.84e-10!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.18e-16!80;UBERON:0002405!5.24e-16!115;UBERON:0001474!5.05e-15!86;UBERON:0002193!3.14e-14!112;UBERON:0004765!1.17e-13!101;UBERON:0001434!1.17e-13!101;UBERON:0002390!8.98e-13!102;UBERON:0003061!8.98e-13!102;UBERON:0000161!4.49e-08!35;UBERON:0000166!8.39e-08!21;UBERON:0000467!1.62e-07!625;UBERON:0000480!1.90e-07!626;UBERON:0000923!6.37e-07!604;UBERON:0005291!6.37e-07!604;UBERON:0006598!6.37e-07!604;UBERON:0002532!6.37e-07!604;UBERON:0002050!7.42e-07!605;UBERON:0005423!7.42e-07!605;UBERON:0000922!9.15e-07!612 | |ontology_enrichment_uberon=UBERON:0002371!4.18e-16!80;UBERON:0002405!5.24e-16!115;UBERON:0001474!5.05e-15!86;UBERON:0002193!3.14e-14!112;UBERON:0004765!1.17e-13!101;UBERON:0001434!1.17e-13!101;UBERON:0002390!8.98e-13!102;UBERON:0003061!8.98e-13!102;UBERON:0000161!4.49e-08!35;UBERON:0000166!8.39e-08!21;UBERON:0000467!1.62e-07!625;UBERON:0000480!1.90e-07!626;UBERON:0000923!6.37e-07!604;UBERON:0005291!6.37e-07!604;UBERON:0006598!6.37e-07!604;UBERON:0002532!6.37e-07!604;UBERON:0002050!7.42e-07!605;UBERON:0005423!7.42e-07!605;UBERON:0000922!9.15e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0001044;6.34e-07;6!UBERON:0003293;6.34e-07;6!UBERON:0003294;6.34e-07;6!UBERON:0010047;6.34e-07;6!UBERON:0003408;6.34e-07;6!UBERON:0000167;6.34e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0001044;6.34e-07;6!UBERON:0003293;6.34e-07;6!UBERON:0003294;6.34e-07;6!UBERON:0010047;6.34e-07;6!UBERON:0003408;6.34e-07;6!UBERON:0000167;6.34e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,4.94e-07,90;UBERON:0001044,5.70e-07,6;UBERON:0003293,5.70e-07,6;UBERON:0003294,5.70e-07,6;UBERON:0010047,5.70e-07,6;UBERON:0000167,5.70e-07,6 | |||
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|short_description=p7@RGS12 | |short_description=p7@RGS12 | ||
}} | }} |
Latest revision as of 14:12, 17 September 2015
Short description: | p7@RGS12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RGS12_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 33bp_to_ENST00000503041_5end |
EntrezGene: | RGS12 |
HGNC: | 9994 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelial cell | 4.80e-20 | 34 |
melanocyte | 7.86e-20 | 10 |
melanoblast | 7.86e-20 | 10 |
pigment cell | 7.39e-14 | 14 |
acinar cell | 1.09e-13 | 5 |
light melanocyte | 1.37e-13 | 3 |
acinar cell of salivary gland | 1.42e-13 | 3 |
epithelial cell | 5.93e-13 | 253 |
neurecto-epithelial cell | 5.68e-12 | 20 |
glandular epithelial cell | 1.41e-11 | 9 |
protein secreting cell | 2.06e-11 | 6 |
general ecto-epithelial cell | 1.60e-09 | 14 |
endo-epithelial cell | 2.21e-09 | 42 |
endodermal cell | 9.13e-09 | 58 |
embryonic cell | 1.52e-08 | 250 |
corneal epithelial cell | 1.62e-08 | 2 |
columnar/cuboidal epithelial cell | 1.64e-08 | 27 |
granulocyte monocyte progenitor cell | 8.86e-08 | 67 |
ectodermal cell | 1.66e-07 | 72 |
macrophage dendritic cell progenitor | 1.74e-07 | 61 |
defensive cell | 2.32e-07 | 48 |
phagocyte | 2.32e-07 | 48 |
respiratory epithelial cell | 2.44e-07 | 13 |
epithelial cell of alimentary canal | 6.89e-07 | 20 |
myeloid lineage restricted progenitor cell | 9.87e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 4.94e-07 | 90 |
saliva-secreting gland | 5.70e-07 | 6 |
gland of oral region | 5.70e-07 | 6 |
gland of foregut | 5.70e-07 | 6 |
oral gland | 5.70e-07 | 6 |
oral cavity | 5.70e-07 | 6 |