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MacroAPE 1083:HOXC9 Ainv15-Hoxc9-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;112;57;276;70!2;41;91;353;30!3;32;396;12;75!4;92;331;9;83!5;432;6;68;9!6;1;7;1;506!7;432;53;18;12!8;496;6;4;9!9;506;2;2;5!10;4;2;1;508!11;24...")
 
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6;0.0374548!10464-106H5;0.16829!10827-111C8;0.17241!10789-110H6;0.836498!10828-111C9;0.166185!10788-110H5;0.278702!10792-110H9;0.00257168!10765-110E9;0.358412!10829-111D1;0.0400027!10830-111D2;0.18247!10831-111D3;0.206935!10832-111D4;0.156606!10833-111D5;0.315496!10764-110E8;0.139827!10770-110F5;0.432933!10399-106A3;0.570386!10400-106A4;0.236239!10405-106A9;0.298459!10834-111D6;0.228972!10835-111D7;0.733723!10836-111D8;0.160141!10837-111D9;0.808908!10699-109G6;0.277423!10802-111A1;0.00430926!10796-110I4;0.077455!10010-101C1;0.639346!10810-111A9;0.832777!10421-106C7;0.314315!10708-109H6;0.0579368!12235-129G3;0.00418546!12236-129G4;0.846912!12237-129G5;0.78621!10167-103B5;0.61364!10151-102I7;0.0215848!10428-106D5;0.0575858!10795-110I3;0.360829!10805-111A4;0.289306!10052-101G7;0.153144!10189-103D9;0.299729!10589-108D4;0.35125!10425-106D2;0.939542!10427-106D4;0.1332!10702-109G9;0.0208989!10432-106D9;0.553792!10496-107C1;0.54989!10718-109I7;0.167602!10011-101C2;0.0071821!10053-101G8;0.134375!10686-109F2;0.221096!10084-102B3;0.864157!10012-101C3;0.0176204!10085-102B4;0.0215429!10482-107A5;0.165138!10419-106C5;0.234073!10080-102A8;0.43821!10760-110E4;0.369834!10709-109H7;0.0142575!10710-109H8;0.0865751!10703-109H1;0.859792!10719-109I8;0.943004!10642-109A3;0.896777!10177-103C6;0.157678!10164-103B2;0.0164681!10173-103C2;0.0957488!10166-103B4;0.000706848!10083-102B2;0.00961675!10188-103D8;0.00161932!10552-107I3;0.0323476!10553-107I4;0.000766289!10013-101C4;0.243131!10536-107G5;0.0717666!10618-108G6;0.861406!10423-106C9;0.221819!10785-110H2;0.0428178!12238-129G6;0.0129764!12239-129G7;0.726594!12240-129G8;0.591565!10416-106C2;0.891685!10801-110I9;0.076609!10766-110F1;0.00735027!10824-111C5;0.399984!10825-111C6;0.711178!10826-111C7;0.66932!10454-106G4;0.554231!10409-106B4;0.638824!10638-108I8;0.285905!10636-108I6;0.365234!10513-107D9;0.298842!10420-106C6;0.105734!10082-102B1;0.893246!10014-101C5;0.000423929!10070-101I7;0.0327972!10452-106G2;0.0315008!10453-106G3;0.845705!10449-106F8;0.93537!10042-101F6;0.801329!10069-101I6;0.0196826!10193-103E4;0.537853!10631-108I1;0.0377516!10438-106E6;0.0523203!10488-107B2;0.0842652!10196-103E7;0.537954!10071-101I8;0.874701!10071-101I8;0.0954188!10041-101F5;0.0404507!10451-106G1;0.473612!10450-106F9;0.0829823!10604-108F1;0.00777351!10605-108F2;0.417695!10606-108F3;0.495434!10603-108E9;0.41546!10497-107C2;0.428296!10448-106F7;0.429359!10643-109A4;0.491328!10426-106D3;0.839231!10431-106D8;0.452741!10197-103E8;0.809036!10443-106F2;0.351361!10815-111B5;0.300885!10816-111B6;0.541577!10817-111B7;0.636382!10015-101C6;0.387755!10410-106B5;0.462287!10054-101G9;0.394382!10758-110E2;0.194952!10711-109H9;0.0803098!10040-101F4;0.871602!10470-106I2;0.0343548!10415-106C1;0.523781!10198-103E9;0.610792!10614-108G2;0.378107!10612-108F9;0.453015!10549-107H9;0.128919!10615-108G3;0.543501!10487-107B1;0.575284!10433-106E1;0.85599!10688-109F4;0.152117!10444-106F3;0.908302!10444-106F3;0.0127403!10485-107A8;0.0124109!10413-106B8;0.219066!10175-103C4;0.783255!10161-103A8;0.030086!12131-128D7;0.0441547!10624-108H3;0.12182!10712-109I1;0.335387!10205-103F7;0.163392!10206-103F8;0.356305!10207-103F9;0.416244!10050-101G5;0.951472!10051-101G6;0.168016!10016-101C7;0.579747!10046-101G1;0.459363!10778-110G4;0.511882!10633-108I3;0.965695!10818-111B8;0.471178!10819-111B9;0.0698473!10820-111C1;0.0824996!10484-107A7;0.0848905!10808-111A7;0.769139!10169-103B7;0.0625172!10153-102I9;0.0246145!13425-144D5;0.0409061!13433-144E4;0.261529!13437-144E8;0.162076!11904-125F5;0.21221!11905-125F6;0.341064!10039-101F3;0.103437!10791-110H8;0.0486857!10017-101C8;0.0489058!10045-101F9;0.53891!10509-107D5;0.224698!10839-111E2;0.400609!10692-109F8;0.894554!10079-102A7;0.070078!10078-102A6;0.17467!10721-110A1;0.436312!10569-108B2;0.725171!10570-108B3;0.734546!10571-108B4;0.363238!10647-109A8;0.432136!10752-110D5;0.565019!10782-110G8;0.331746!10726-110A6;0.612984!10018-101C9;0.246692!10086-102B5;0.116893!10182-103D2;0.364001!10165-103B3;0.00100781!10499-107C4;0.0157603!10408-106B3;0.930423!10019-101D1;0.0752114!10068-101I5;0.032341!10075-102A3;0.216604!10077-102A5;0.0369353!10727-110A7;0.184828!10775-110G1;0.0517495!10412-106B7;0.055604!12231-129F8;0.986891!12232-129F9;0.943735!12233-129G1;0.813411!12234-129G2;0.96754!10414-106B9;0.752409!10170-103B8;0.0526011!10183-103D3;0.00915766!10150-102I6;0.0437333!10174-103C3;0.0459859!10155-103A2;0.00173556!10038-101F2;0.00154271!10838-111E1;0.00134134!10759-110E3;0.393171!10514-107E1;0.888557!10465-106H6;0.497867!10691-109F7;0.202048!10843-111E6;0.632567!10844-111E7;0.422146!11747-123G1;0.0700455!11748-123G2;0.753308!11749-123G3;0.770542!11750-123G4;0.937779!11751-123G5;0.340468!11840-124H4;0.477152!11752-123G6;0.813893!11753-123G7;0.46251!11754-123G8;0.744068!11755-123G9;0.332507!11756-123H1;0.412057!11833-124G6;0.755465!11760-123H5;0.762642!11836-124G9;0.953139!11758-123H3;0.985407!11835-124G8;0.903417!11762-123H7;0.565529!11838-124H2;0.810737!11757-123H2;0.451843!11759-123H4;0.377707!11761-123H6;0.41868!11842-124H6;0.37769!11837-124H1;0.770722!10568-108B1;0.662387!13230-141I8;0.811411!13231-141I9;0.798172!10696-109G3;0.599001!10493-107B7;0.939053!10494-107B8;0.804884!10850-111F4;0.231925!10851-111F5;0.40785!10852-111F6;0.239017!10853-111F7;0.592551!10854-111F8;0.359711!10855-111F9;0.843303!10856-111G1;0.340336!10847-111F1;0.423868!10846-111E9;0.51584!10848-111F2;0.709067!10845-111E8;0.902585!10857-111G2;0.669855!10858-111G3;0.740133!10156-103A3;0.592324!11901-125F2;0.057227!11902-125F3;0.0443725!11903-125F4;0.190149!10689-109F5;0.262325!10648-109A9;0.292677!10784-110H1;0.391391!10744-110C6;0.634785!10772-110F7;0.269917!10474-106I6;0.134007!10600-108E6;0.141908!10684-109E9;0.159181!12226-129F3;0.098025!12227-129F4;0.339733!10508-107D4;0.162306!10539-107G8;0.975099!10607-108F4;0.246461!10555-107I6;0.321056!10774-110F9;0.424819!10637-108I7;0.184993!10663-109C6;0.792543!10728-110A8;0.513838!10729-110A9;0.2135!10430-106D7;0.130576!10730-110B1;0.300689!10813-111B3;0.584724!10812-111B2;0.116672!10037-101F1;0.340093!10172-103C1;0.0498947!10163-103B1;0.0210114!10076-102A4;0.0529642!10073-102A1;0.0303362!10036-101E9;0.0909343!10195-103E6;0.0397048!10277-104E7;0.0245762!10434-106E2;0.0784224!10550-107I1;0.0205591!10545-107H5;0.609022!10544-107H4;0.0725339!10704-109H2;0.339043!10510-107D6;0.0178251!10558-107I9;0.0166662!10020-101D2;0.758829!10732-110B3;0.507973!10049-101G4;0.94018!10698-109G5;0.0921872!10437-106E5;0.00916802!10417-106C3;0.209622!10035-101E8;0.883408!10171-103B9;0.024629!10157-103A4;0.0141992!10034-101E7;0.0362192!10072-101I9;0.0301433!10199-103F1;0.173594!10200-103F2;0.0378241!10697-109G4;0.544897!10723-110A3;0.675866!10179-103C8;0.0550328!10160-103A7;0.0346546!10180-103C9;0.195754!10162-103A9;0.916249!10021-101D3;0.954834!10840-111E3;0.14412!10706-109H4;0.109828!10033-101E6;0.561129!10032-101E5;0.000851302!10490-107B4;0.0362851!10439-106E7;0.248389!10022-101D4;0.820976!10176-103C5;0.121869!10469-106I1;0.0287401!10067-101I4;0.771701!10411-106B6;0.00245259!10471-106I3;0.535415!10030-101E3;0.368622!10475-106I7;0.136786!10787-110H4;0.569731!10477-106I9;0.286182!10695-109G2;0.0595152!11771-123I7;0.689495!11772-123I8;0.00720674!11773-123I9;0.00370554!10093-102C3;0.154905!10442-106F1;0.41929!10442-106F1;0.134874!10201-103F3;0.16014!10639-108I9;0.568077!11843-124H7;0.430109!11841-124H5;0.472036!10693-109F9;0.176335!10436-106E4;0.47515!10483-107A6;0.53715!10282-104F3;0.802187!10023-101D5;0.699715!10066-101I3;0.850063!10065-101I2;0.342512!10800-110I8;0.355402!10610-108F7;0.708685!10841-111E4;0.765438!10541-107H1;0.230818!10842-111E5;0.838778!10562-108A4;0.790163!10024-101D6;0.89482!10064-101I1;0.1897!10609-108F6;0.45265!10048-101G3;0.773196!10781-110G7;0.0689639!10181-103D1;0.840871!10159-103A6;0.000325894!10056-101H2;0.00098273!10737-110B8;0.000127182!10025-101D7;0.874148!10044-101F8;0.188968!10424-106D1;0.590238!10463-106H4;0.0155592!10616-108G4;0.16942!10486-107A9;0.688773!10062-101H8;0.0215605!10202-103F4;0.196073!10158-103A5;0.14836!10441-106E9;0.0250329!10031-101E4;0.161042!10063-101H9;0.0385685!10063-101H9;0.131204!11763-123H8;0.0345662!11765-123I1;0.573506!11768-123I4;0.845819!10807-111A6;0.923543!10790-110H7;0.667178!10798-110I6;0.986376!10786-110H3;0.228751!10591-108D6;0.992782!10593-108D8;0.868714!10590-108D5;0.805445!10026-101D8;0.460287!10096-102C6;0.871912!10168-103B6;0.748574!10154-103A1;0.00476871!10209-103G2;0.0530155!10061-101H7;0.814626!10027-101D9;0.743334!10043-101F7;0.102661!10783-110G9;0.0996473!10028-101E1;0.160859!10060-101H6;0.0464415!10203-103F5;0.200948!10059-101H5;0.5373!10047-101G2;0.988412!10029-101E2;0.204603!10058-101H4;0.948426!10418-106C4;0.876245!10492-107B6;0.704125!10694-109G1;0.559447!10797-110I5;0.198112!10057-101H3;0.166348!10100-102D1;0.224637!10055-101H1;0.0589508!10204-103F6;0.0532258!10191-103E2;0.507583!10563-108A5;0.674027
|name=HOXC9_Ainv15-Hoxc9-ChIP-Seq/Homer
|name=HOXC9_Ainv15-Hoxc9-ChIP-Seq/Homer
|tomtom_result=PBX1#MA0070.1;-2;0.000504875;0.24032;0.480641;10;GGCCATAAATCA;CCATCAATCAAA;+!Abd-B#MA0165.1;-2;0.00121936;0.580413;0.503474;7;GGCCATAAATCA;TCATAAA;-!cad#MA0216.1;-2;0.00173422;0.825491;0.503474;7;GGCCATAAATCA;CAATAAA;-!YPR015C#MA0435.1;3;0.00211544;1.00695;0.503474;12;GGCCATAAATCA;TGAAGACGTAAATCCTTACA;+!YPR013C#MA0434.1;-3;0.00567386;2.70076;1;9;GGCCATAAATCA;TGTAGATCA;+!onecut#MA0235.1;-6;0.00793424;3.7767;1;6;GGCCATAAATCA;AAATCAA;-!CG42234#MA0174.1;-2;0.00951375;4.52855;1;7;GGCCATAAATCA;TAATAAA;-!AGL3#MA0001.1;-2;0.0123469;5.8771;1;10;GGCCATAAATCA;CCATAAATAG;+!HNF4A#MA0114.1;1;0.0150549;7.16612;1;12;GGCCATAAATCA;AGGCCAAAGGTCA;+!hb#MA0049.1;-2;0.0161867;7.70488;1;10;GGCCATAAATCA;GCATAAAAAA;+!H2.0#MA0448.1;-2;0.0171753;8.17545;1;7;GGCCATAAATCA;TAATTAA;-!MEF2A#MA0052.1;-2;0.0178811;8.5114;1;10;GGCCATAAATCA;CTATAAATAG;-!CG4328#MA0182.1;-2;0.0185998;8.85348;1;7;GGCCATAAATCA;CAATAAA;-!Gfi#MA0038.1;-5;0.0197332;9.39302;1;7;GGCCATAAATCA;CAAATCACTG;+!tup#MA0248.1;-2;0.0209191;9.9575;1;7;GGCCATAAATCA;CAATTAA;-
}}
}}

Latest revision as of 12:55, 7 September 2012

Full Name: HOXC9_Ainv15-Hoxc9-ChIP-Seq/Homer

Motif matrix
POACGT
11125727670
2419135330
3323961275
492331983
54326689
6171506
7432531812
8496649
9506225
10421508
1124437450
12373316105

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PBX1#MA0070.1-20.0005048750.240320.48064110GGCCATAAATCACCATCAATCAAA+
Abd-B#MA0165.1-20.001219360.5804130.5034747GGCCATAAATCATCATAAA-
cad#MA0216.1-20.001734220.8254910.5034747GGCCATAAATCACAATAAA-
YPR015C#MA0435.130.002115441.006950.50347412GGCCATAAATCATGAAGACGTAAATCCTTACA+
YPR013C#MA0434.1-30.005673862.7007619GGCCATAAATCATGTAGATCA+
onecut#MA0235.1-60.007934243.776716GGCCATAAATCAAAATCAA-
CG42234#MA0174.1-20.009513754.5285517GGCCATAAATCATAATAAA-
AGL3#MA0001.1-20.01234695.8771110GGCCATAAATCACCATAAATAG+
HNF4A#MA0114.110.01505497.16612112GGCCATAAATCAAGGCCAAAGGTCA+
hb#MA0049.1-20.01618677.70488110GGCCATAAATCAGCATAAAAAA+
H2.0#MA0448.1-20.01717538.1754517GGCCATAAATCATAATTAA-
MEF2A#MA0052.1-20.01788118.5114110GGCCATAAATCACTATAAATAG-
CG4328#MA0182.1-20.01859988.8534817GGCCATAAATCACAATAAA-
Gfi#MA0038.1-50.01973329.3930217GGCCATAAATCACAAATCACTG+
tup#MA0248.1-20.02091919.957517GGCCATAAATCACAATTAA-
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