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MacroAPE 1083:GCGCGCG,motif507: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.648;1.648;1277.2;367.504!2;288.4;1142.064;1.648;215.888!3;3.296;1.648;1504.624;138.432!4;494.4;1150.304;1.648;1.648!5;1.648;1.648;1147.008...")
 
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835!12176-128I7;0.357839!12177-128I8;0.560792!12182-129A4;0.798286!12183-129A5;0.460749!12184-129A6;0.55126!10809-111A8;0.305046!10597-108E3;0.80221!10717-109I6;0.0837132!10455-106G5;0.705049!10534-107G3;0.0762518!10429-106D6;0.0183129!10464-106H5;0.0233478!10827-111C8;0.0105342!10789-110H6;0.030926!10828-111C9;0.665018!10788-110H5;0.509845!10792-110H9;0.00906292!10765-110E9;0.0825668!10829-111D1;0.370252!10830-111D2;0.0877156!10831-111D3;0.0280305!10832-111D4;0.244602!10833-111D5;0.12887!10764-110E8;0.0629234!10770-110F5;0.0273961!10399-106A3;0.0376631!10400-106A4;0.0263149!10405-106A9;0.0497965!10834-111D6;0.034478!10835-111D7;0.0360079!10836-111D8;0.0994401!10837-111D9;0.2334!10699-109G6;0.098276!10802-111A1;0.157165!10796-110I4;0.084945!10010-101C1;0.0568376!10810-111A9;0.126334!10421-106C7;0.10824!10708-109H6;0.380389!12235-129G3;0.302615!12236-129G4;0.0293032!12237-129G5;0.0232876!10167-103B5;0.0160831!10151-102I7;0.0111824!10428-106D5;0.0220914!10795-110I3;0.606566!10805-111A4;0.0377363!10052-101G7;0.052785!10189-103D9;0.381527!10589-108D4;0.332211!10425-106D2;0.0194662!10427-106D4;0.209069!10702-109G9;0.0338751!10432-106D9;0.0156034!10496-107C1;0.25853!10718-109I7;0.196321!10011-101C2;0.421624!10053-101G8;0.317878!10686-109F2;0.839853!10084-102B3;0.54537!10012-101C3;0.0172469!10085-102B4;0.0173418!10482-107A5;0.00902544!10419-106C5;0.087331!10080-102A8;0.0753204!10760-110E4;0.191955!10709-109H7;0.0430269!10710-109H8;0.0277973!10703-109H1;0.135292!10719-109I8;0.0152409!10642-109A3;0.0138328!10177-103C6;0.025439!10164-103B2;0.0115715!10173-103C2;0.0104322!10166-103B4;0.00762659!10083-102B2;0.0104364!10188-103D8;0.00979355!10552-107I3;0.0160615!10553-107I4;0.172477!10013-101C4;0.177287!10536-107G5;0.482194!10618-108G6;0.351904!10423-106C9;0.167775!10785-110H2;0.153651!12238-129G6;0.125953!12239-129G7;0.0244287!12240-129G8;0.0102158!10416-106C2;0.0269455!10801-110I9;0.0113787!10766-110F1;0.526535!10824-111C5;0.275907!10825-111C6;0.228588!10826-111C7;0.260343!10454-106G4;0.285154!10409-106B4;0.100706!10638-108I8;0.160652!10636-108I6;0.0328225!10513-107D9;0.310545!10420-106C6;0.250181!10082-102B1;0.0221776!10014-101C5;0.963507!10070-101I7;0.459475!10452-106G2;0.67031!10453-106G3;0.0421564!10449-106F8;0.014051!10042-101F6;0.0156026!10069-101I6;0.0226003!10193-103E4;0.170505!10631-108I1;0.0193192!10438-106E6;0.0220339!10488-107B2;0.0197374!10196-103E7;0.829105!10071-101I8;0.425988!10071-101I8;0.775632!10041-101F5;0.00962954!10451-106G1;0.944257!10450-106F9;0.0825345!10604-108F1;0.0392956!10605-108F2;0.0712952!10606-108F3;0.269564!10603-108E9;0.154964!10497-107C2;0.108599!10448-106F7;0.974671!10643-109A4;0.60935!10426-106D3;0.213768!10431-106D8;0.396864!10197-103E8;0.0781857!10443-106F2;0.271283!10815-111B5;0.082423!10816-111B6;0.20739!10817-111B7;0.157312!10015-101C6;0.187892!10410-106B5;0.258065!10054-101G9;0.329781!10758-110E2;0.799069!10711-109H9;0.428312!10040-101F4;0.504563!10470-106I2;0.0140482!10415-106C1;0.0316118!10198-103E9;0.418127!10614-108G2;0.374546!10612-108F9;0.269014!10549-107H9;0.0567138!10615-108G3;0.123623!10487-107B1;0.0624084!10433-106E1;0.188257!10688-109F4;0.797476!10444-106F3;0.79504!10444-106F3;0.464509!10485-107A8;0.403009!10413-106B8;0.392551!10175-103C4;0.940114!10161-103A8;0.026197!12131-128D7;0.0305133!10624-108H3;0.0255116!10712-109I1;0.774846!10205-103F7;0.0291621!10206-103F8;0.279455!10207-103F9;0.272759!10050-101G5;0.11921!10051-101G6;0.178691!10016-101C7;0.0670544!10046-101G1;0.0601432!10778-110G4;0.575696!10633-108I3;0.00291045!10818-111B8;0.108196!10819-111B9;0.434944!10820-111C1;0.488332!10484-107A7;0.372427!10808-111A7;0.483989!10169-103B7;0.0545112!10153-102I9;0.0212728!13425-144D5;0.0263628!13433-144E4;0.0124183!13437-144E8;0.00618609!11904-125F5;0.010232!11905-125F6;0.310664!10039-101F3;0.479755!10791-110H8;0.0118909!10017-101C8;0.36805!10045-101F9;0.447206!10509-107D5;0.672168!10839-111E2;0.928288!10692-109F8;0.539892!10079-102A7;0.0415752!10078-102A6;0.179851!10721-110A1;0.0445628!10569-108B2;0.453407!10570-108B3;0.00983093!10571-108B4;0.00470637!10647-109A8;0.00778556!10752-110D5;0.32263!10782-110G8;0.23686!10726-110A6;0.0291696!10018-101C9;0.188454!10086-102B5;0.0693058!10182-103D2;0.15347!10165-103B3;0.0603907!10499-107C4;0.030082!10408-106B3;0.46856!10019-101D1;0.345827!10068-101I5;0.253146!10075-102A3;0.484646!10077-102A5;0.289868!10727-110A7;0.798969!10775-110G1;0.266036!10412-106B7;0.0349737!12231-129F8;0.214082!12232-129F9;0.172234!12233-129G1;0.0429278!12234-129G2;0.0683291!10414-106B9;0.29306!10170-103B8;0.0923304!10183-103D3;0.0197536!10150-102I6;0.0205461!10174-103C3;0.0254271!10155-103A2;0.0824204!10038-101F2;0.0509203!10838-111E1;0.0463896!10759-110E3;0.0102819!10514-107E1;0.0408421!10465-106H6;0.434971!10691-109F7;0.0379102!10843-111E6;0.0130749!10844-111E7;0.0226368!11747-123G1;0.024079!11748-123G2;0.0389689!11749-123G3;0.0163334!11750-123G4;0.119875!11751-123G5;0.0338289!11840-124H4;0.0237267!11752-123G6;0.0256308!11753-123G7;0.00250088!11754-123G8;0.0380608!11755-123G9;0.040889!11756-123H1;0.0346805!11833-124G6;0.0248768!11760-123H5;0.00318868!11836-124G9;0.0204537!11758-123H3;0.0881041!11835-124G8;0.0154369!11762-123H7;0.00535358!11838-124H2;0.0338435!11757-123H2;0.0167418!11759-123H4;0.0788242!11761-123H6;0.00559205!11842-124H6;0.0121039!11837-124H1;0.0129811!10568-108B1;0.0101002!13230-141I8;0.0841678!13231-141I9;0.0375655!10696-109G3;0.0371464!10493-107B7;0.95136!10494-107B8;0.25431!10850-111F4;0.320807!10851-111F5;0.551364!10852-111F6;0.456094!10853-111F7;0.0851713!10854-111F8;0.122362!10855-111F9;0.438895!10856-111G1;0.0329179!10847-111F1;0.73303!10846-111E9;0.652218!10848-111F2;0.968714!10845-111E8;0.351692!10857-111G2;0.130171!10858-111G3;0.953937!10156-103A3;0.230934!11901-125F2;0.0240499!11902-125F3;0.298932!11903-125F4;0.21715!10689-109F5;0.207076!10648-109A9;0.685995!10784-110H1;0.959114!10744-110C6;0.608093!10772-110F7;0.0761553!10474-106I6;0.0197223!10600-108E6;0.457855!10684-109E9;0.457635!12226-129F3;0.525086!12227-129F4;0.402459!10508-107D4;0.0109575!10539-107G8;0.0267799!10607-108F4;0.0166333!10555-107I6;0.0374589!10774-110F9;0.0224575!10637-108I7;0.0436958!10663-109C6;0.0090161!10728-110A8;0.0526878!10729-110A9;0.0153161!10430-106D7;0.00822252!10730-110B1;0.01911!10813-111B3;0.0152063!10812-111B2;0.0457879!10037-101F1;0.00510813!10172-103C1;0.0101002!10163-103B1;0.0225445!10076-102A4;0.0245618!10073-102A1;0.0172613!10036-101E9;0.0121958!10195-103E6;0.0133374!10277-104E7;0.0126592!10434-106E2;0.0175906!10550-107I1;0.189362!10545-107H5;0.0204271!10544-107H4;0.965434!10704-109H2;0.576896!10510-107D6;0.0023326!10558-107I9;0.106663!10020-101D2;0.103687!10732-110B3;0.837758!10049-101G4;0.859122!10698-109G5;0.450529!10437-106E5;0.0320865!10417-106C3;0.73649!10035-101E8;0.302208!10171-103B9;0.0151435!10157-103A4;0.0194041!10034-101E7;0.0201225!10072-101I9;0.0171861!10199-103F1;0.0123833!10200-103F2;0.354167!10697-109G4;0.237294!10723-110A3;0.0527243!10179-103C8;0.352058!10160-103A7;0.0354322!10180-103C9;0.041318!10162-103A9;0.0229799!10021-101D3;0.0149402!10840-111E3;0.0700366!10706-109H4;0.00952717!10033-101E6;0.254413!10032-101E5;0.0239149!10490-107B4;0.0178211!10439-106E7;0.0774381!10022-101D4;0.136977!10176-103C5;0.602519!10469-106I1;0.0122164!10067-101I4;0.424344!10411-106B6;0.0929208!10471-106I3;0.0715708!10030-101E3;0.860978!10475-106I7;0.613008!10787-110H4;0.00959449!10477-106I9;0.199253!10695-109G2;0.156154!11771-123I7;0.0762384!11772-123I8;0.662091!11773-123I9;0.698868!10093-102C3;0.942055!10442-106F1;0.977372!10442-106F1;0.901194!10201-103F3;0.407818!10639-108I9;0.306681!11843-124H7;0.755888!11841-124H5;0.432855!10693-109F9;0.259528!10436-106E4;0.541932!10483-107A6;0.45415!10282-104F3;0.707241!10023-101D5;0.10186!10066-101I3;0.0363264!10065-101I2;0.150364!10800-110I8;0.504751!10610-108F7;0.0143744!10841-111E4;0.0782398!10541-107H1;0.0725411!10842-111E5;0.0674957!10562-108A4;0.0137217!10024-101D6;0.0262568!10064-101I1;0.503144!10609-108F6;0.8801!10048-101G3;0.211281!10781-110G7;0.452242!10181-103D1;0.118202!10159-103A6;0.0919601!10056-101H2;0.0289809!10737-110B8;0.0662463!10025-101D7;0.00796259!10044-101F8;0.906678!10424-106D1;0.575531!10463-106H4;0.129795!10616-108G4;0.0824793!10486-107A9;0.622556!10062-101H8;0.321741!10202-103F4;0.818937!10158-103A5;0.814726!10441-106E9;0.0738866!10031-101E4;0.0833081!10063-101H9;0.0129745!10063-101H9;0.0111195!11763-123H8;0.83448!11765-123I1;0.0428227!11768-123I4;0.01592!10807-111A6;0.0273!10790-110H7;0.0957165!10798-110I6;0.0664544!10786-110H3;0.242675!10591-108D6;0.160517!10593-108D8;0.032037!10590-108D5;0.109171!10026-101D8;0.0500299!10096-102C6;0.135025!10168-103B6;0.00327565!10154-103A1;0.0287415!10209-103G2;0.0213185!10061-101H7;0.242712!10027-101D9;0.747905!10043-101F7;0.00416282!10783-110G9;0.0094713!10028-101E1;0.403604!10060-101H6;0.433335!10203-103F5;0.707998!10059-101H5;0.211995!10047-101G2;0.180146!10029-101E2;0.683712!10058-101H4;0.253809!10418-106C4;0.356917!10492-107B6;0.069556!10694-109G1;0.0405061!10797-110I5;0.690706!10057-101H3;0.18933!10100-102D1;0.0864689!10055-101H1;0.93353!10204-103F6;0.78733!10191-103E2;0.41693!10563-108A5;0.531138
|name=GCGCGCG,motif507,CNhs10642,T:1648.0(48.06%),B:24358.2(38.10%),P:1e-31
|name=GCGCGCG,motif507,CNhs10642,T:1648.0(48.06%),B:24358.2(38.10%),P:1e-31
|tomtom_result=RSC30#MA0375.1;1;6.31329e-05;0.0300512;0.0601025;7;GCGCGCG;CGCGCGCG;-!RSC3#MA0374.1;0;0.000516699;0.245949;0.163966;7;GCGCGCG;CCGCGCG;-!STP3#MA0396.1;1;0.00763749;3.63545;1;7;GCGCGCG;TGCGCTAGC;-!TEA1#MA0405.1;2;0.00795125;3.7848;1;6;GCGCGCG;ATGCCCGC;-!STP4#MA0397.1;1;0.010264;4.88565;1;7;GCGCGCG;TGCGCTATC;-!MBP1#MA0329.1;0;0.0107704;5.12671;1;7;GCGCGCG;ACGCGTA;+!DAL82#MA0291.1;3;0.0108686;5.17347;1;6;GCGCGCG;AATGTGCGC;+!h#MA0449.1;1;0.015401;7.33086;1;7;GCGCGCG;GGCACGTGCC;+!Trl#MA0205.1;2;0.0162732;7.74604;1;7;GCGCGCG;GAGAGAGCAA;-
}}
}}

Latest revision as of 12:57, 7 September 2012

Full Name: GCGCGCG,motif507,CNhs10642,T:1648.0(48.06%),B:24358.2(38.10%),P:1e-31

Motif matrix
POACGT
11.6481.6481277.2367.504
2288.41142.0641.648215.888
33.2961.6481504.624138.432
4494.41150.3041.6481.648
51.6481.6481147.008497.696
6588.3361056.3681.6481.648
7148.32112.064957.488430.128

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RSC30#MA0375.116.31329e-050.03005120.06010257GCGCGCGCGCGCGCG-
RSC3#MA0374.100.0005166990.2459490.1639667GCGCGCGCCGCGCG-
STP3#MA0396.110.007637493.6354517GCGCGCGTGCGCTAGC-
TEA1#MA0405.120.007951253.784816GCGCGCGATGCCCGC-
STP4#MA0397.110.0102644.8856517GCGCGCGTGCGCTATC-
MBP1#MA0329.100.01077045.1267117GCGCGCGACGCGTA+
DAL82#MA0291.130.01086865.1734716GCGCGCGAATGTGCGC+
h#MA0449.110.0154017.3308617GCGCGCGGGCACGTGCC+
Trl#MA0205.120.01627327.7460417GCGCGCGGAGAGAGCAA-
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