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MacroAPE 1083:6-ACGCTTGTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;936.65;362.739;228.202;175.409!2;47.684;1454.362;199.251;1.703!3;20.436;30.654;1571.869;80.041!4;3.406;791.895;417.235;490.464!5;321.867;185...")
 
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789-110H6;0.595848!10828-111C9;0.776618!10788-110H5;0.642181!10792-110H9;0.646983!10765-110E9;0.601864!10829-111D1;0.637427!10830-111D2;0.885939!10831-111D3;0.515393!10832-111D4;0.295921!10833-111D5;0.962447!10764-110E8;0.888573!10770-110F5;0.876312!10399-106A3;0.855911!10400-106A4;0.590629!10405-106A9;0.674629!10834-111D6;0.778969!10835-111D7;0.978991!10836-111D8;0.653877!10837-111D9;0.686366!10699-109G6;0.994065!10802-111A1;0.13484!10796-110I4;0.651606!10010-101C1;0.849352!10810-111A9;0.181158!10421-106C7;0.420054!10708-109H6;0.579811!12235-129G3;0.112744!12236-129G4;0.726594!12237-129G5;0.788852!10167-103B5;0.62812!10151-102I7;0.438026!10428-106D5;0.339719!10795-110I3;0.687224!10805-111A4;0.619363!10052-101G7;0.106115!10189-103D9;0.374094!10589-108D4;0.0887402!10425-106D2;0.92176!10427-106D4;0.242156!10702-109G9;0.866537!10432-106D9;0.728995!10496-107C1;0.299952!10718-109I7;0.734742!10011-101C2;0.901936!10053-101G8;0.208876!10686-109F2;0.882153!10084-102B3;0.0839388!10012-101C3;0.349157!10085-102B4;0.29213!10482-107A5;0.43241!10419-106C5;0.503165!10080-102A8;0.881896!10760-110E4;0.244687!10709-109H7;0.623321!10710-109H8;0.215379!10703-109H1;0.64807!10719-109I8;0.415656!10642-109A3;0.991882!10177-103C6;0.339202!10164-103B2;0.545965!10173-103C2;0.479624!10166-103B4;0.450235!10083-102B2;0.193719!10188-103D8;0.134473!10552-107I3;0.251074!10553-107I4;0.134374!10013-101C4;0.720643!10536-107G5;0.231975!10618-108G6;0.0123844!10423-106C9;0.820319!10785-110H2;0.472226!12238-129G6;0.913667!12239-129G7;0.483276!12240-129G8;0.415878!10416-106C2;0.302906!10801-110I9;0.604121!10766-110F1;0.203377!10824-111C5;0.461859!10825-111C6;0.482039!10826-111C7;0.496967!10454-106G4;0.367476!10409-106B4;0.387843!10638-108I8;0.28539!10636-108I6;0.637494!10513-107D9;0.688715!10420-106C6;0.571591!10082-102B1;0.100779!10014-101C5;0.128335!10070-101I7;0.0825588!10452-106G2;0.202078!10453-106G3;0.182946!10449-106F8;0.596239!10042-101F6;0.500107!10069-101I6;0.473603!10193-103E4;0.230256!10631-108I1;0.353518!10438-106E6;0.378765!10488-107B2;0.51021!10196-103E7;0.369023!10071-101I8;0.047303!10071-101I8;0.235846!10041-101F5;0.547154!10451-106G1;0.272902!10450-106F9;0.635012!10604-108F1;0.675614!10605-108F2;0.0708688!10606-108F3;0.217931!10603-108E9;0.174721!10497-107C2;0.0352377!10448-106F7;0.0625131!10643-109A4;0.0364776!10426-106D3;0.78026!10431-106D8;0.457951!10197-103E8;0.268694!10443-106F2;0.0746373!10815-111B5;0.135571!10816-111B6;0.253139!10817-111B7;0.162176!10015-101C6;0.250464!10410-106B5;0.157124!10054-101G9;0.67014!10758-110E2;0.122456!10711-109H9;0.0561934!10040-101F4;0.137646!10470-106I2;0.402611!10415-106C1;0.238843!10198-103E9;0.028479!10614-108G2;0.293776!10612-108F9;0.918629!10549-107H9;0.472561!10615-108G3;0.0917009!10487-107B1;0.359777!10433-106E1;0.314029!10688-109F4;0.0413567!10444-106F3;0.708372!10444-106F3;0.0795365!10485-107A8;0.101921!10413-106B8;0.339051!10175-103C4;0.321779!10161-103A8;0.612452!12131-128D7;0.390649!10624-108H3;0.166315!10712-109I1;0.554048!10205-103F7;0.622608!10206-103F8;0.325316!10207-103F9;0.29355!10050-101G5;0.796903!10051-101G6;0.261296!10016-101C7;0.19588!10046-101G1;0.312394!10778-110G4;0.40326!10633-108I3;0.807811!10818-111B8;0.286758!10819-111B9;0.469924!10820-111C1;0.608451!10484-107A7;0.50396!10808-111A7;0.640565!10169-103B7;0.623318!10153-102I9;0.537499!13425-144D5;0.43482!13433-144E4;0.0887792!13437-144E8;0.0693774!11904-125F5;0.0695955!11905-125F6;0.858363!10039-101F3;0.769206!10791-110H8;0.33683!10017-101C8;0.805294!10045-101F9;0.210204!10509-107D5;0.399213!10839-111E2;0.0515707!10692-109F8;0.911807!10079-102A7;0.267073!10078-102A6;0.297825!10721-110A1;0.27779!10569-108B2;0.41498!10570-108B3;0.31578!10571-108B4;0.0495554!10647-109A8;0.213958!10752-110D5;0.00348889!10782-110G8;0.348443!10726-110A6;0.152916!10018-101C9;0.159976!10086-102B5;0.188756!10182-103D2;0.48079!10165-103B3;0.514696!10499-107C4;0.323004!10408-106B3;0.00635243!10019-101D1;0.46342!10068-101I5;0.678226!10075-102A3;0.973787!10077-102A5;0.667472!10727-110A7;0.432115!10775-110G1;0.56297!10412-106B7;0.955555!12231-129F8;0.367784!12232-129F9;0.492709!12233-129G1;0.156099!12234-129G2;0.139966!10414-106B9;0.345684!10170-103B8;0.0547826!10183-103D3;0.559613!10150-102I6;0.432721!10174-103C3;0.435825!10155-103A2;0.542426!10038-101F2;0.237938!10838-111E1;0.274596!10759-110E3;0.552009!10514-107E1;0.129195!10465-106H6;0.109737!10691-109F7;0.519303!10843-111E6;0.816229!10844-111E7;0.923119!11747-123G1;0.942162!11748-123G2;0.101535!11749-123G3;0.469424!11750-123G4;0.10474!11751-123G5;0.354305!11840-124H4;0.45894!11752-123G6;0.184424!11753-123G7;0.973964!11754-123G8;0.341866!11755-123G9;0.64097!11756-123H1;0.0276882!11833-124G6;0.164788!11760-123H5;0.551097!11836-124G9;0.695984!11758-123H3;0.43158!11835-124G8;0.301205!11762-123H7;0.418503!11838-124H2;0.404335!11757-123H2;0.368136!11759-123H4;0.803253!11761-123H6;0.914731!11842-124H6;0.910951!11837-124H1;0.844798!10568-108B1;0.429484!13230-141I8;0.826078!13231-141I9;0.247145!10696-109G3;0.25446!10493-107B7;0.106638!10494-107B8;0.0454613!10850-111F4;0.276265!10851-111F5;0.617807!10852-111F6;0.474721!10853-111F7;0.828042!10854-111F8;0.00495065!10855-111F9;0.0621185!10856-111G1;0.408719!10847-111F1;0.175895!10846-111E9;0.134713!10848-111F2;0.581863!10845-111E8;0.933114!10857-111G2;0.249325!10858-111G3;0.514365!10156-103A3;0.305032!11901-125F2;0.449729!11902-125F3;0.508797!11903-125F4;0.741169!10689-109F5;0.628062!10648-109A9;0.864095!10784-110H1;0.959193!10744-110C6;0.107833!10772-110F7;0.843837!10474-106I6;0.617052!10600-108E6;0.520828!10684-109E9;0.0353343!12226-129F3;0.126403!12227-129F4;0.941781!10508-107D4;0.203842!10539-107G8;0.994314!10607-108F4;0.93234!10555-107I6;0.96689!10774-110F9;0.523641!10637-108I7;0.713092!10663-109C6;0.948832!10728-110A8;0.94608!10729-110A9;0.980057!10430-106D7;0.916161!10730-110B1;0.0883283!10813-111B3;0.698688!10812-111B2;0.318715!10037-101F1;0.491615!10172-103C1;0.398511!10163-103B1;0.621783!10076-102A4;0.392585!10073-102A1;0.28795!10036-101E9;0.79799!10195-103E6;0.340095!10277-104E7;0.370171!10434-106E2;0.59371!10550-107I1;0.576085!10545-107H5;0.540589!10544-107H4;0.858835!10704-109H2;0.498139!10510-107D6;0.337518!10558-107I9;0.000717086!10020-101D2;0.138931!10732-110B3;0.180508!10049-101G4;0.281977!10698-109G5;0.0869953!10437-106E5;0.430305!10417-106C3;0.00792895!10035-101E8;0.245254!10171-103B9;0.383941!10157-103A4;0.565426!10034-101E7;0.369547!10072-101I9;0.335002!10199-103F1;0.836392!10200-103F2;0.00648122!10697-109G4;0.143178!10723-110A3;0.495861!10179-103C8;0.822802!10160-103A7;0.535928!10180-103C9;0.432843!10162-103A9;0.507472!10021-101D3;0.212082!10840-111E3;0.805355!10706-109H4;0.731161!10033-101E6;0.0628781!10032-101E5;0.237011!10490-107B4;0.298966!10439-106E7;0.118573!10022-101D4;0.072841!10176-103C5;0.170799!10469-106I1;0.380224!10067-101I4;0.519188!10411-106B6;0.420759!10471-106I3;0.777717!10030-101E3;0.981298!10475-106I7;0.180999!10787-110H4;0.329268!10477-106I9;0.670577!10695-109G2;0.595038!11771-123I7;0.335889!11772-123I8;0.507058!11773-123I9;0.346178!10093-102C3;0.662202!10442-106F1;0.028719!10442-106F1;0.00283327!10201-103F3;0.000670457!10639-108I9;0.0372717!11843-124H7;0.437483!11841-124H5;0.133195!10693-109F9;0.334969!10436-106E4;0.230705!10483-107A6;0.776915!10282-104F3;0.694836!10023-101D5;0.175081!10066-101I3;0.218128!10065-101I2;0.15237!10800-110I8;0.187667!10610-108F7;0.0540042!10841-111E4;0.984292!10541-107H1;0.318419!10842-111E5;0.0747191!10562-108A4;0.569545!10024-101D6;0.00123219!10064-101I1;0.0326245!10609-108F6;0.136233!10048-101G3;0.549781!10781-110G7;0.153185!10181-103D1;0.0578163!10159-103A6;0.322929!10056-101H2;0.34983!10737-110B8;0.2397!10025-101D7;0.274782!10044-101F8;0.201882!10424-106D1;0.406375!10463-106H4;0.710973!10616-108G4;0.394929!10486-107A9;0.201084!10062-101H8;0.499826!10202-103F4;0.192758!10158-103A5;0.0447933!10441-106E9;0.332352!10031-101E4;0.025738!10063-101H9;0.283981!10063-101H9;0.802373!11763-123H8;0.0986605!11765-123I1;0.404505!11768-123I4;0.473268!10807-111A6;0.124069!10790-110H7;0.0238402!10798-110I6;0.272465!10786-110H3;0.181447!10591-108D6;0.0138621!10593-108D8;0.0040577!10590-108D5;0.0164836!10026-101D8;0.0322717!10096-102C6;0.36645!10168-103B6;0.479315!10154-103A1;0.408559!10209-103G2;0.360357!10061-101H7;0.126918!10027-101D9;0.372546!10043-101F7;0.391118!10783-110G9;0.673664!10028-101E1;0.0403209!10060-101H6;0.342746!10203-103F5;0.364963!10059-101H5;0.112541!10047-101G2;0.17563!10029-101E2;0.328497!10058-101H4;0.442777!10418-106C4;0.415905!10492-107B6;0.504088!10694-109G1;0.0803439!10797-110I5;0.158055!10057-101H3;0.791853!10100-102D1;0.327578!10055-101H1;0.301017!10204-103F6;0.279037!10191-103E2;0.31475!10563-108A5;0.118312
|name=6-ACGCTTGTTT,CNhs11955,BestGuess:FOXO3_si_HM09(0.644060692176259),T:1703.0(40.59%),B:12652.6(29.25%),P:1e-54
|name=6-ACGCTTGTTT,CNhs11955,BestGuess:FOXO3_si_HM09(0.644060692176259),T:1703.0(40.59%),B:12652.6(29.25%),P:1e-54
|tomtom_result=Pax6#MA0069.1;3;0.00325349;1.54866;1;10;ACGCTTGTTT;TTCACGCATGAGTT;+!Foxd3#MA0041.1;2;0.00554623;2.64;1;10;ACGCTTGTTT;GAATGTTTGTTT;+!Klf4#MA0039.1;-1;0.00922141;4.38939;1;9;ACGCTTGTTT;CCTTCCTTTA;-!TBP#MA0108.2;-1;0.0180766;8.60446;1;9;ACGCTTGTTT;CCCCGCCTTTTATAC;-!TBP#MA0108.2;-1;0.0180766;8.60446;1;9;ACGCTTGTTT;CCCCGCCTTTTATAC;-!FKH1#MA0296.1;2;0.0183699;8.74408;1;10;ACGCTTGTTT;TCCTCTTTGTTTACAATTCA;-!FOXI1#MA0042.1;-2;0.0204693;9.7434;1;8;ACGCTTGTTT;GGATGTTTGTTT;+
}}
}}

Latest revision as of 13:29, 7 September 2012

Full Name: 6-ACGCTTGTTT,CNhs11955,BestGuess:FOXO3_si_HM09(0.644060692176259),T:1703.0(40.59%),B:12652.6(29.25%),P:1e-54

Motif matrix
POACGT
1936.65362.739228.202175.409
247.6841454.362199.2511.703
320.43630.6541571.86980.041
43.406791.895417.235490.464
5321.867185.627105.5861089.92
6245.232280.995253.747923.026
783.447425.75870.233323.57
8141.349316.758226.4991018.394
9127.725289.5122.1391263.626
1051.0986.85395.3681469.689

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax6#MA0069.130.003253491.54866110ACGCTTGTTTTTCACGCATGAGTT+
Foxd3#MA0041.120.005546232.64110ACGCTTGTTTGAATGTTTGTTT+
Klf4#MA0039.1-10.009221414.3893919ACGCTTGTTTCCTTCCTTTA-
TBP#MA0108.2-10.01807668.6044619ACGCTTGTTTCCCCGCCTTTTATAC-
TBP#MA0108.2-10.01807668.6044619ACGCTTGTTTCCCCGCCTTTTATAC-
FKH1#MA0296.120.01836998.74408110ACGCTTGTTTTCCTCTTTGTTTACAATTCA-
FOXI1#MA0042.1-20.02046939.743418ACGCTTGTTTGGATGTTTGTTT+
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