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MacroAPE 1083:5-TGWTTKCCWG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;29.145;48.72;90.915;266.22!2;0.435;0.435;433.695;0.435!3;185.31;82.215;42.63;124.845!4;0.435;0.435;0.435;433.695!5;7.83;57.855;0.435;368.88!...")
 
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828-111C9;0.915117!10788-110H5;0.796132!10792-110H9;0.654882!10765-110E9;0.599048!10829-111D1;0.558972!10830-111D2;0.541528!10831-111D3;0.335622!10832-111D4;0.60873!10833-111D5;0.723665!10764-110E8;0.764992!10770-110F5;0.500029!10399-106A3;0.893973!10400-106A4;0.619225!10405-106A9;0.613212!10834-111D6;0.610114!10835-111D7;0.601498!10836-111D8;0.718759!10837-111D9;0.501938!10699-109G6;0.841664!10802-111A1;0.636486!10796-110I4;0.588065!10010-101C1;0.342954!10810-111A9;0.28179!10421-106C7;0.46117!10708-109H6;0.571538!12235-129G3;0.25694!12236-129G4;0.301708!12237-129G5;0.844487!10167-103B5;0.183392!10151-102I7;0.290656!10428-106D5;0.277846!10795-110I3;0.59313!10805-111A4;0.249218!10052-101G7;0.507042!10189-103D9;0.481293!10589-108D4;0.49336!10425-106D2;0.907892!10427-106D4;0.536688!10702-109G9;0.954806!10432-106D9;0.137263!10496-107C1;0.777857!10718-109I7;0.844317!10011-101C2;0.720166!10053-101G8;0.619022!10686-109F2;0.569378!10084-102B3;0.545289!10012-101C3;0.353223!10085-102B4;0.313468!10482-107A5;0.469!10419-106C5;0.872926!10080-102A8;0.766275!10760-110E4;0.234649!10709-109H7;0.897057!10710-109H8;0.683838!10703-109H1;0.627049!10719-109I8;0.222333!10642-109A3;0.056906!10177-103C6;0.0797819!10164-103B2;0.234639!10173-103C2;0.211464!10166-103B4;0.339648!10083-102B2;0.294808!10188-103D8;0.304008!10552-107I3;0.345159!10553-107I4;0.718387!10013-101C4;0.319285!10536-107G5;0.602611!10618-108G6;0.20508!10423-106C9;0.85108!10785-110H2;0.554102!12238-129G6;0.832303!12239-129G7;0.831374!12240-129G8;0.17293!10416-106C2;0.591929!10801-110I9;0.863695!10766-110F1;0.597274!10824-111C5;0.453995!10825-111C6;0.578737!10826-111C7;0.523147!10454-106G4;0.525575!10409-106B4;0.519197!10638-108I8;0.638876!10636-108I6;0.978626!10513-107D9;0.379019!10420-106C6;0.690171!10082-102B1;0.451613!10014-101C5;0.560825!10070-101I7;0.729835!10452-106G2;0.834301!10453-106G3;0.0256177!10449-106F8;0.119086!10042-101F6;0.116609!10069-101I6;0.196507!10193-103E4;0.595134!10631-108I1;0.278039!10438-106E6;0.830473!10488-107B2;0.599112!10196-103E7;0.180088!10071-101I8;0.457504!10071-101I8;0.735858!10041-101F5;0.330868!10451-106G1;0.319945!10450-106F9;0.302634!10604-108F1;0.539496!10605-108F2;0.660813!10606-108F3;0.227879!10603-108E9;0.281129!10497-107C2;0.370729!10448-106F7;0.736008!10643-109A4;0.194369!10426-106D3;0.768065!10431-106D8;0.554935!10197-103E8;0.827998!10443-106F2;0.520615!10815-111B5;0.279982!10816-111B6;0.616903!10817-111B7;0.627858!10015-101C6;0.527796!10410-106B5;0.577403!10054-101G9;0.0590715!10758-110E2;0.259121!10711-109H9;0.202852!10040-101F4;0.634967!10470-106I2;0.335755!10415-106C1;0.961333!10198-103E9;0.131945!10614-108G2;0.985598!10612-108F9;0.550046!10549-107H9;0.573819!10615-108G3;0.704045!10487-107B1;0.36348!10433-106E1;0.45279!10688-109F4;0.134846!10444-106F3;0.329421!10444-106F3;0.507951!10485-107A8;0.663003!10413-106B8;0.631317!10175-103C4;0.56077!10161-103A8;0.252475!12131-128D7;0.180926!10624-108H3;0.853182!10712-109I1;0.426761!10205-103F7;0.26187!10206-103F8;0.488614!10207-103F9;0.719794!10050-101G5;0.489483!10051-101G6;0.40753!10016-101C7;0.640209!10046-101G1;0.718199!10778-110G4;0.225824!10633-108I3;0.158155!10818-111B8;0.582004!10819-111B9;0.473911!10820-111C1;0.476686!10484-107A7;0.519417!10808-111A7;0.98483!10169-103B7;0.737578!10153-102I9;0.303982!13425-144D5;0.253462!13433-144E4;0.447167!13437-144E8;0.395867!11904-125F5;0.46067!11905-125F6;0.325877!10039-101F3;0.818016!10791-110H8;0.375621!10017-101C8;0.705334!10045-101F9;0.328896!10509-107D5;0.279399!10839-111E2;0.166805!10692-109F8;0.107313!10079-102A7;0.952077!10078-102A6;0.252337!10721-110A1;0.866091!10569-108B2;0.211063!10570-108B3;0.680781!10571-108B4;0.256067!10647-109A8;0.302693!10752-110D5;0.975919!10782-110G8;0.91821!10726-110A6;0.175704!10018-101C9;0.753258!10086-102B5;0.677048!10182-103D2;0.270722!10165-103B3;0.272115!10499-107C4;0.200088!10408-106B3;0.707251!10019-101D1;0.214113!10068-101I5;0.55843!10075-102A3;0.603937!10077-102A5;0.901648!10727-110A7;0.84373!10775-110G1;0.38074!10412-106B7;0.854513!12231-129F8;0.938214!12232-129F9;0.0902617!12233-129G1;0.0410945!12234-129G2;0.0294619!10414-106B9;0.0703351!10170-103B8;0.949242!10183-103D3;0.353878!10150-102I6;0.309899!10174-103C3;0.305642!10155-103A2;0.186742!10038-101F2;0.167143!10838-111E1;0.227493!10759-110E3;0.0574946!10514-107E1;0.389533!10465-106H6;0.580391!10691-109F7;0.922026!10843-111E6;0.0129782!10844-111E7;0.204838!11747-123G1;0.0227954!11748-123G2;0.138682!11749-123G3;0.302676!11750-123G4;0.190079!11751-123G5;0.648664!11840-124H4;0.540351!11752-123G6;0.361959!11753-123G7;0.517508!11754-123G8;0.629954!11755-123G9;0.265395!11756-123H1;0.121797!11833-124G6;0.348091!11760-123H5;0.469909!11836-124G9;0.393562!11758-123H3;0.0987572!11835-124G8;0.144953!11762-123H7;0.527571!11838-124H2;0.213041!11757-123H2;0.576601!11759-123H4;0.306374!11761-123H6;0.144135!11842-124H6;0.892339!11837-124H1;0.480878!10568-108B1;0.414146!13230-141I8;0.183187!13231-141I9;0.706138!10696-109G3;0.48975!10493-107B7;0.651268!10494-107B8;0.11875!10850-111F4;0.812717!10851-111F5;0.889907!10852-111F6;0.744832!10853-111F7;0.426279!10854-111F8;0.386923!10855-111F9;0.603981!10856-111G1;0.473719!10847-111F1;0.497903!10846-111E9;0.577345!10848-111F2;0.516475!10845-111E8;0.839599!10857-111G2;0.647473!10858-111G3;0.661886!10156-103A3;0.256824!11901-125F2;0.288952!11902-125F3;0.748849!11903-125F4;0.459761!10689-109F5;0.631059!10648-109A9;0.999024!10784-110H1;0.868485!10744-110C6;0.289192!10772-110F7;0.720844!10474-106I6;0.957767!10600-108E6;0.855795!10684-109E9;0.976541!12226-129F3;0.651197!12227-129F4;0.214275!10508-107D4;0.531836!10539-107G8;0.174004!10607-108F4;0.0538733!10555-107I6;0.40554!10774-110F9;0.218754!10637-108I7;0.452062!10663-109C6;0.0193728!10728-110A8;0.189427!10729-110A9;0.791598!10430-106D7;0.228835!10730-110B1;0.916123!10813-111B3;0.329454!10812-111B2;0.937792!10037-101F1;0.252648!10172-103C1;0.308171!10163-103B1;0.283748!10076-102A4;0.264042!10073-102A1;0.390864!10036-101E9;0.249245!10195-103E6;0.388233!10277-104E7;0.336281!10434-106E2;0.50765!10550-107I1;0.738378!10545-107H5;0.994622!10544-107H4;0.615768!10704-109H2;0.518289!10510-107D6;0.272857!10558-107I9;0.943843!10020-101D2;0.941914!10732-110B3;0.420214!10049-101G4;0.35717!10698-109G5;0.258939!10437-106E5;0.559372!10417-106C3;0.781902!10035-101E8;0.25798!10171-103B9;0.340208!10157-103A4;0.329307!10034-101E7;0.322875!10072-101I9;0.347527!10199-103F1;0.265401!10200-103F2;0.708377!10697-109G4;0.648169!10723-110A3;0.66305!10179-103C8;0.848193!10160-103A7;0.326643!10180-103C9;0.127503!10162-103A9;0.758898!10021-101D3;0.381656!10840-111E3;0.887029!10706-109H4;0.783669!10033-101E6;0.177376!10032-101E5;0.241439!10490-107B4;0.368684!10439-106E7;0.983809!10022-101D4;0.720634!10176-103C5;0.393414!10469-106I1;0.202437!10067-101I4;0.598567!10411-106B6;0.45586!10471-106I3;0.995422!10030-101E3;0.116427!10475-106I7;0.136899!10787-110H4;0.468157!10477-106I9;0.587641!10695-109G2;0.804029!11771-123I7;0.138309!11772-123I8;0.109881!11773-123I9;0.483755!10093-102C3;0.518872!10442-106F1;0.472673!10442-106F1;0.364318!10201-103F3;0.272425!10639-108I9;0.72433!11843-124H7;0.336065!11841-124H5;0.384647!10693-109F9;0.381698!10436-106E4;0.98287!10483-107A6;0.361591!10282-104F3;0.289616!10023-101D5;0.417654!10066-101I3;0.956992!10065-101I2;0.740201!10800-110I8;0.293931!10610-108F7;0.48549!10841-111E4;0.52354!10541-107H1;0.828487!10842-111E5;0.694871!10562-108A4;0.177192!10024-101D6;0.359716!10064-101I1;0.896325!10609-108F6;0.7474!10048-101G3;0.277912!10781-110G7;0.666217!10181-103D1;0.958466!10159-103A6;0.262906!10056-101H2;0.168745!10737-110B8;0.226063!10025-101D7;0.346602!10044-101F8;0.860385!10424-106D1;0.283003!10463-106H4;0.84025!10616-108G4;0.937399!10486-107A9;0.202616!10062-101H8;0.854473!10202-103F4;0.937404!10158-103A5;0.958813!10441-106E9;0.172283!10031-101E4;0.518273!10063-101H9;0.384974!10063-101H9;0.27822!11763-123H8;0.639772!11765-123I1;0.57422!11768-123I4;0.856582!10807-111A6;0.529325!10790-110H7;0.296208!10798-110I6;0.357386!10786-110H3;0.970061!10591-108D6;0.654465!10593-108D8;0.529162!10590-108D5;0.821249!10026-101D8;0.693539!10096-102C6;0.00277787!10168-103B6;0.0060216!10154-103A1;0.212327!10209-103G2;0.191775!10061-101H7;0.544988!10027-101D9;0.394829!10043-101F7;0.546755!10783-110G9;0.080069!10028-101E1;0.577049!10060-101H6;0.525945!10203-103F5;0.497489!10059-101H5;0.587819!10047-101G2;0.837192!10029-101E2;0.332579!10058-101H4;0.429013!10418-106C4;0.438965!10492-107B6;0.951873!10694-109G1;0.53518!10797-110I5;0.524731!10057-101H3;0.0445632!10100-102D1;0.477442!10055-101H1;0.685938!10204-103F6;0.648436!10191-103E2;0.523164!10563-108A5;0.412808
|name=5-TGWTTKCCWG,BestGuess:EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq/Homer(0.704718315630705),T:435.0(18.64%),B:4626.0(10.02%),P:1e-33
|name=5-TGWTTKCCWG,BestGuess:EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq/Homer(0.704718315630705),T:435.0(18.64%),B:4626.0(10.02%),P:1e-33
|tomtom_result=NFYA#MA0060.1;4;0.00202397;0.96341;0.602791;10;TGATTGCCTG;GCGCTGATTGGCTGAG;-!dl_2#MA0023.1;2;0.00262704;1.25047;0.602791;8;TGATTGCCTG;GGGGATTTCC;+!HAP3#MA0314.1;2;0.00388547;1.84948;0.602791;10;TGATTGCCTG;TCTGATTGGTTCAGA;+!REL#MA0101.1;2;0.00453155;2.15702;0.602791;8;TGATTGCCTG;GGGGATTTCC;+!YPR013C#MA0434.1;0;0.00463636;2.20691;0.602791;9;TGATTGCCTG;TGATCTACA;-!STAT1#MA0137.2;-1;0.00497735;2.36922;0.602791;9;TGATTGCCTG;CATTTCCCGGAAACC;+!onecut#MA0235.1;1;0.00507747;2.41688;0.602791;6;TGATTGCCTG;TTGATTT;+!FEV#MA0156.1;-2;0.00688102;3.27537;0.726138;8;TGATTGCCTG;ATTTCCTG;-!FOXO3#MA0157.1;0;0.00880385;4.19063;0.759356;8;TGATTGCCTG;TGTTTACA;-!SPT23#MA0388.1;1;0.0093572;4.45403;0.759356;7;TGATTGCCTG;TTGATTTC;-!Gfi#MA0038.1;3;0.0095944;4.56693;0.759356;7;TGATTGCCTG;CAGTGATTTG;-!NFATC2#MA0152.1;-2;0.011477;5.46306;0.838483;7;TGATTGCCTG;TTTTCCA;+!RELA#MA0107.1;2;0.0148462;7.06677;0.997635;8;TGATTGCCTG;GGGAATTTCC;+!HAP4#MA0315.1;7;0.019327;9.19966;0.997635;8;TGATTGCCTG;TCGCCTCTGATTGGT;-
}}
}}

Latest revision as of 14:00, 7 September 2012

Full Name: 5-TGWTTKCCWG,BestGuess:EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq/Homer(0.704718315630705),T:435.0(18.64%),B:4626.0(10.02%),P:1e-33

Motif matrix
POACGT
129.14548.7290.915266.22
20.4350.435433.6950.435
3185.3182.21542.63124.845
40.4350.4350.435433.695
57.8357.8550.435368.88
60.4350.435221.415212.715
70.435277.965156.1650.435
80.435410.6423.490.435
9174.8753.5050.435206.625
1053.07123.105258.390.435

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFYA#MA0060.140.002023970.963410.60279110TGATTGCCTGGCGCTGATTGGCTGAG-
dl_2#MA0023.120.002627041.250470.6027918TGATTGCCTGGGGGATTTCC+
HAP3#MA0314.120.003885471.849480.60279110TGATTGCCTGTCTGATTGGTTCAGA+
REL#MA0101.120.004531552.157020.6027918TGATTGCCTGGGGGATTTCC+
YPR013C#MA0434.100.004636362.206910.6027919TGATTGCCTGTGATCTACA-
STAT1#MA0137.2-10.004977352.369220.6027919TGATTGCCTGCATTTCCCGGAAACC+
onecut#MA0235.110.005077472.416880.6027916TGATTGCCTGTTGATTT+
FEV#MA0156.1-20.006881023.275370.7261388TGATTGCCTGATTTCCTG-
FOXO3#MA0157.100.008803854.190630.7593568TGATTGCCTGTGTTTACA-
SPT23#MA0388.110.00935724.454030.7593567TGATTGCCTGTTGATTTC-
Gfi#MA0038.130.00959444.566930.7593567TGATTGCCTGCAGTGATTTG-
NFATC2#MA0152.1-20.0114775.463060.8384837TGATTGCCTGTTTTCCA+
RELA#MA0107.120.01484627.066770.9976358TGATTGCCTGGGGAATTTCC+
HAP4#MA0315.170.0193279.199660.9976358TGATTGCCTGTCGCCTCTGATTGGT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:5-TGWTTKCCWG&oldid=2134203"