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MacroAPE 1083:2-AWTSGCT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;451.641;0.453;0.453;0.453!2;192.072;0.453;0.453;260.022!3;3.624;158.55;0.453;290.373!4;97.395;192.525;162.627;0.453!5;0.453;143.601;308.493;...")
 
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838-124H2;0.137147!11757-123H2;0.126745!11759-123H4;0.296796!11761-123H6;0.333404!11842-124H6;0.861597!11837-124H1;0.466405!10568-108B1;0.0857352!13230-141I8;0.111122!13231-141I9;0.0490595!10696-109G3;0.0298894!10493-107B7;0.886544!10494-107B8;0.589227!10850-111F4;0.0565366!10851-111F5;0.796144!10852-111F6;0.967716!10853-111F7;0.978605!10854-111F8;0.213883!10855-111F9;0.791445!10856-111G1;0.690613!10847-111F1;0.658322!10846-111E9;0.46299!10848-111F2;0.30862!10845-111E8;0.101387!10857-111G2;0.0557831!10858-111G3;0.505287!10156-103A3;0.882226!11901-125F2;0.996088!11902-125F3;0.593565!11903-125F4;0.953504!10689-109F5;0.466127!10648-109A9;0.779122!10784-110H1;0.491986!10744-110C6;0.105684!10772-110F7;0.752237!10474-106I6;0.293676!10600-108E6;0.325723!10684-109E9;0.00795216!12226-129F3;0.870815!12227-129F4;0.871103!10508-107D4;0.42708!10539-107G8;0.0876367!10607-108F4;0.0601953!10555-107I6;0.0313776!10774-110F9;0.0159432!10637-108I7;0.0450447!10663-109C6;0.308318!10728-110A8;0.135813!10729-110A9;0.477578!10430-106D7;0.0321998!10730-110B1;0.00139901!10813-111B3;0.388686!10812-111B2;0.141191!10037-101F1;0.0185297!10172-103C1;0.763107!10163-103B1;0.894473!10076-102A4;0.988696!10073-102A1;0.69323!10036-101E9;0.588906!10195-103E6;0.613697!10277-104E7;0.655246!10434-106E2;0.82676!10550-107I1;0.197156!10545-107H5;0.0772143!10544-107H4;0.0185724!10704-109H2;0.0566716!10510-107D6;0.322534!10558-107I9;0.183593!10020-101D2;0.957017!10732-110B3;0.0878799!10049-101G4;0.618345!10698-109G5;0.193167!10437-106E5;0.153646!10417-106C3;0.119309!10035-101E8;0.0569839!10171-103B9;0.744365!10157-103A4;0.779863!10034-101E7;0.844106!10072-101I9;0.674309!10199-103F1;0.345878!10200-103F2;0.341945!10697-109G4;0.502759!10723-110A3;0.738361!10179-103C8;0.181223!10160-103A7;0.819113!10180-103C9;0.563805!10162-103A9;0.77285!10021-101D3;0.684883!10840-111E3;0.0688861!10706-109H4;0.167178!10033-101E6;0.357137!10032-101E5;0.829679!10490-107B4;0.671951!10439-106E7;0.0645601!10022-101D4;0.0657573!10176-103C5;0.188621!10469-106I1;0.938478!10067-101I4;0.076958!10411-106B6;0.899969!10471-106I3;0.983707!10030-101E3;0.514869!10475-106I7;0.599146!10787-110H4;0.0241944!10477-106I9;0.121411!10695-109G2;0.0320913!11771-123I7;0.0570482!11772-123I8;0.542172!11773-123I9;0.420864!10093-102C3;0.165987!10442-106F1;0.276036!10442-106F1;0.287982!10201-103F3;0.390566!10639-108I9;0.267244!11843-124H7;0.000922567!11841-124H5;0.268048!10693-109F9;0.999537!10436-106E4;0.0729832!10483-107A6;0.0210005!10282-104F3;0.0524765!10023-101D5;0.845638!10066-101I3;0.514631!10065-101I2;0.369247!10800-110I8;0.704066!10610-108F7;0.0547375!10841-111E4;0.121113!10541-107H1;0.353466!10842-111E5;0.0618516!10562-108A4;0.00571221!10024-101D6;0.0300369!10064-101I1;0.63308!10609-108F6;0.772554!10048-101G3;0.0110327!10781-110G7;0.0579051!10181-103D1;0.17892!10159-103A6;0.87943!10056-101H2;0.904219!10737-110B8;0.905019!10025-101D7;0.0513987!10044-101F8;0.315203!10424-106D1;0.462374!10463-106H4;0.109746!10616-108G4;0.252739!10486-107A9;0.245702!10062-101H8;0.336364!10202-103F4;0.856623!10158-103A5;0.653948!10441-106E9;0.957859!10031-101E4;0.0535843!10063-101H9;0.480375!10063-101H9;0.499717!11763-123H8;0.367939!11765-123I1;0.0820096!11768-123I4;0.0247772!10807-111A6;0.0245759!10790-110H7;0.0103591!10798-110I6;0.00813009!10786-110H3;0.0285318!10591-108D6;0.000579844!10593-108D8;0.00180943!10590-108D5;0.000334349!10026-101D8;0.000772853!10096-102C6;0.78643!10168-103B6;0.0370848!10154-103A1;0.824689!10209-103G2;0.921685!10061-101H7;0.915522!10027-101D9;0.480103!10043-101F7;0.0633608!10783-110G9;0.0454717!10028-101E1;0.073869!10060-101H6;0.730267!10203-103F5;0.721919!10059-101H5;0.924692!10047-101G2;0.981331!10029-101E2;0.848009!10058-101H4;0.5138!10418-106C4;0.921181!10492-107B6;0.000413854!10694-109G1;0.268999!10797-110I5;0.811768!10057-101H3;0.965366!10100-102D1;0.941344!10055-101H1;0.115121!10204-103F6;0.94911!10191-103E2;0.175173!10563-108A5;0.339851
|name=2-AWTSGCT,CNhs13795,BestGuess:CEBPZ_si_HM09(0.744042497450074),T:453.0(10.20%),B:2373.4(5.42%),P:1e-36
|name=2-AWTSGCT,CNhs13795,BestGuess:CEBPZ_si_HM09(0.744042497450074),T:453.0(10.20%),B:2373.4(5.42%),P:1e-36
|tomtom_result=ttx-3::ceh-10#MA0263.1;0;0.00283068;1.3474;1;7;ATTCGCT;ATTGGCTTCGTTAA;+!z#MA0255.1;0;0.0115008;5.47438;1;7;ATTCGCT;AATCACTCAA;-!NFYA#MA0060.1;6;0.0158992;7.56804;1;7;ATTCGCT;GCGCTGATTGGCTGAG;-
}}
}}

Latest revision as of 14:01, 7 September 2012

Full Name: 2-AWTSGCT,CNhs13795,BestGuess:CEBPZ_si_HM09(0.744042497450074),T:453.0(10.20%),B:2373.4(5.42%),P:1e-36

Motif matrix
POACGT
1451.6410.4530.4530.453
2192.0720.4530.453260.022
33.624158.550.453290.373
497.395192.525162.6270.453
50.453143.601308.4930.453
614.496434.4270.4533.624
70.4530.45396.942355.152

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ttx-3::ceh-10#MA0263.100.002830681.347417ATTCGCTATTGGCTTCGTTAA+
z#MA0255.100.01150085.4743817ATTCGCTAATCACTCAA-
NFYA#MA0060.160.01589927.5680417ATTCGCTGCGCTGATTGGCTGAG-
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