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MacroAPE 1083:10-ACTTCCTCTTCC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;366.336;175.68;20.736;13.248!2;11.52;484.992;78.912;0.576!3;83.52;35.136;0.576;456.768!4;25.92;111.168;128.448;310.464!5;0.576;492.48;64.512...")
 
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5-123G9;0.510988!11756-123H1;0.135481!11833-124G6;0.439916!11760-123H5;0.138079!11836-124G9;0.909623!11758-123H3;0.756216!11835-124G8;0.721445!11762-123H7;0.827697!11838-124H2;0.67193!11757-123H2;0.896928!11759-123H4;0.732556!11761-123H6;0.732104!11842-124H6;0.598916!11837-124H1;0.986051!10568-108B1;0.825593!13230-141I8;0.415156!13231-141I9;0.513228!10696-109G3;0.508279!10493-107B7;0.620476!10494-107B8;0.272885!10850-111F4;0.0498045!10851-111F5;0.0110585!10852-111F6;0.804552!10853-111F7;0.699662!10854-111F8;0.0788636!10855-111F9;0.743335!10856-111G1;0.0913374!10847-111F1;0.0294098!10846-111E9;0.341082!10848-111F2;0.492082!10845-111E8;0.0542512!10857-111G2;0.84241!10858-111G3;0.163659!10156-103A3;0.970141!11901-125F2;0.243861!11902-125F3;0.0206481!11903-125F4;0.0153351!10689-109F5;0.0154947!10648-109A9;0.0632014!10784-110H1;0.15694!10744-110C6;0.97487!10772-110F7;0.150914!10474-106I6;0.0791605!10600-108E6;0.0384445!10684-109E9;0.475334!12226-129F3;0.629809!12227-129F4;0.250729!10508-107D4;0.348593!10539-107G8;0.0718109!10607-108F4;0.11778!10555-107I6;0.0135268!10774-110F9;0.07719!10637-108I7;0.135334!10663-109C6;0.0284104!10728-110A8;0.00178606!10729-110A9;0.0102178!10430-106D7;0.589222!10730-110B1;0.672332!10813-111B3;0.0169135!10812-111B2;0.177668!10037-101F1;0.926184!10172-103C1;0.20626!10163-103B1;0.192453!10076-102A4;0.217016!10073-102A1;0.161278!10036-101E9;0.14246!10195-103E6;0.167457!10277-104E7;0.154958!10434-106E2;0.0639813!10550-107I1;0.561942!10545-107H5;0.0233758!10544-107H4;0.153789!10704-109H2;0.0488614!10510-107D6;0.991729!10558-107I9;0.851359!10020-101D2;0.0645653!10732-110B3;0.0367758!10049-101G4;0.538975!10698-109G5;0.267156!10437-106E5;0.63306!10417-106C3;0.134493!10035-101E8;0.600023!10171-103B9;0.176733!10157-103A4;0.138405!10034-101E7;0.233349!10072-101I9;0.194601!10199-103F1;0.16307!10200-103F2;0.975087!10697-109G4;0.0895919!10723-110A3;0.303232!10179-103C8;0.00570308!10160-103A7;0.122086!10180-103C9;0.146838!10162-103A9;0.26375!10021-101D3;0.329159!10840-111E3;0.577168!10706-109H4;0.219345!10033-101E6;0.257252!10032-101E5;0.12473!10490-107B4;0.166578!10439-106E7;0.0640547!10022-101D4;0.0188791!10176-103C5;0.10484!10469-106I1;0.177397!10067-101I4;0.126637!10411-106B6;0.00934438!10471-106I3;0.262444!10030-101E3;0.125986!10475-106I7;0.0694236!10787-110H4;0.0333691!10477-106I9;0.636825!10695-109G2;0.00552161!11771-123I7;0.103891!11772-123I8;0.153563!11773-123I9;0.0399793!10093-102C3;0.102828!10442-106F1;0.865842!10442-106F1;0.215372!10201-103F3;0.194873!10639-108I9;0.241283!11843-124H7;0.00751973!11841-124H5;0.034171!10693-109F9;0.99838!10436-106E4;0.213412!10483-107A6;0.378025!10282-104F3;0.324636!10023-101D5;0.138343!10066-101I3;0.120849!10065-101I2;0.0298612!10800-110I8;0.0113354!10610-108F7;0.0299372!10841-111E4;0.00328208!10541-107H1;0.077601!10842-111E5;0.597374!10562-108A4;0.0607229!10024-101D6;0.00809684!10064-101I1;0.584489!10609-108F6;0.0243126!10048-101G3;0.74766!10781-110G7;0.156869!10181-103D1;0.58768!10159-103A6;0.0461539!10056-101H2;0.232513!10737-110B8;0.0132676!10025-101D7;0.985533!10044-101F8;0.00294551!10424-106D1;0.0857137!10463-106H4;0.0638399!10616-108G4;0.0286373!10486-107A9;0.0608886!10062-101H8;0.275996!10202-103F4;0.00695014!10158-103A5;0.961537!10441-106E9;0.0953876!10031-101E4;0.0330823!10063-101H9;0.178117!10063-101H9;0.158737!11763-123H8;0.0575301!11765-123I1;0.444951!11768-123I4;0.358651!10807-111A6;0.400881!10790-110H7;0.122586!10798-110I6;0.0835877!10786-110H3;0.0589436!10591-108D6;0.0578442!10593-108D8;0.114897!10590-108D5;0.263738!10026-101D8;0.337384!10096-102C6;1.5521e-06!10168-103B6;5.9336e-05!10154-103A1;0.0496876!10209-103G2;0.164295!10061-101H7;0.045648!10027-101D9;0.00368378!10043-101F7;0.112026!10783-110G9;0.597075!10028-101E1;0.352663!10060-101H6;0.327652!10203-103F5;0.119777!10059-101H5;0.021183!10047-101G2;0.00145875!10029-101E2;0.28241!10058-101H4;0.212259!10418-106C4;0.00156955!10492-107B6;0.0175895!10694-109G1;0.224024!10797-110I5;0.00388221!10057-101H3;0.21501!10100-102D1;0.0254392!10055-101H1;0.298194!10204-103F6;0.00367194!10191-103E2;0.215699!10563-108A5;0.243415
|name=10-ACTTCCTCTTCC,CNhs12563,BestGuess:PU.1(ETS)/ThioMac-PU.1-ChIP-Seq/Homer(0.742292052878174),T:576.0(13.16%),B:3275.9(7.45%),P:1e-38
|name=10-ACTTCCTCTTCC,CNhs12563,BestGuess:PU.1(ETS)/ThioMac-PU.1-ChIP-Seq/Homer(0.742292052878174),T:576.0(13.16%),B:3275.9(7.45%),P:1e-38
|tomtom_result=SPIB#MA0081.1;-2;0.000556719;0.264998;0.361828;7;ACTTCCTCTTCC;TTCCTCT;-!SPI1#MA0080.2;0;0.000761139;0.362302;0.361828;7;ACTTCCTCTTCC;ACTTCCT;-!GABPA#MA0062.2;-3;0.00226767;1.07941;0.718666;9;ACTTCCTCTTCC;GCCACTTCCGG;-!GABPA#MA0062.2;-5;0.00360106;1.7141;0.7247;7;ACTTCCTCTTCC;CTCTTCCGGT;-!Klf4#MA0039.1;0;0.00447422;2.12973;0.7247;10;ACTTCCTCTTCC;CCTTCCTTTA;-!SPI1#MA0080.2;-1;0.00475208;2.26199;0.7247;6;ACTTCCTCTTCC;CTTCCG;-!MZF1_5-13#MA0057.1;-2;0.00680619;3.23975;0.7247;10;ACTTCCTCTTCC;TTCCCCCTAC;-!PEND#MA0127.1;0;0.00680619;3.23975;0.7247;10;ACTTCCTCTTCC;ACTTCTTATT;+!id1#MA0120.1;-1;0.00727132;3.46115;0.7247;11;ACTTCCTCTTCC;TTTTCCTTTTCG;+!Ar#MA0007.1;6;0.00762237;3.62825;0.7247;12;ACTTCCTCTTCC;ATAAGAACACCCTGTACCCGCC;+!Trl#MA0205.1;-2;0.00940165;4.47519;0.812605;10;ACTTCCTCTTCC;TTGCTCTCTC;+!ELF5#MA0136.1;1;0.0116775;5.55848;0.925201;8;ACTTCCTCTTCC;TACTTCCTT;+!ETS1#MA0098.1;-1;0.0128261;6.10523;0.928316;6;ACTTCCTCTTCC;CTTCCG;+!GCR2#MA0305.1;-6;0.014429;6.86823;0.928316;6;ACTTCCTCTTCC;GCTTCCT;+!FEV#MA0156.1;0;0.014646;6.9715;0.928316;8;ACTTCCTCTTCC;ATTTCCTG;-!Eip74EF#MA0026.1;-7;0.0200729;9.55471;0.998691;5;ACTTCCTCTTCC;CTTCCGG;-
}}
}}

Latest revision as of 14:07, 7 September 2012

Full Name: 10-ACTTCCTCTTCC,CNhs12563,BestGuess:PU.1(ETS)/ThioMac-PU.1-ChIP-Seq/Homer(0.742292052878174),T:576.0(13.16%),B:3275.9(7.45%),P:1e-38

Motif matrix
POACGT
1366.336175.6820.73613.248
211.52484.99278.9120.576
383.5235.1360.576456.768
425.92111.168128.448310.464
50.576492.4864.51218.432
625.344498.2433.40819.008
746.0888.12891.008350.784
842.048514.3688.06411.52
978.33610.36820.16467.136
1051.26417.85655.296451.584
110.576509.18416.12850.112
1234.56529.3440.57611.52

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPIB#MA0081.1-20.0005567190.2649980.3618287ACTTCCTCTTCCTTCCTCT-
SPI1#MA0080.200.0007611390.3623020.3618287ACTTCCTCTTCCACTTCCT-
GABPA#MA0062.2-30.002267671.079410.7186669ACTTCCTCTTCCGCCACTTCCGG-
GABPA#MA0062.2-50.003601061.71410.72477ACTTCCTCTTCCCTCTTCCGGT-
Klf4#MA0039.100.004474222.129730.724710ACTTCCTCTTCCCCTTCCTTTA-
SPI1#MA0080.2-10.004752082.261990.72476ACTTCCTCTTCCCTTCCG-
MZF1_5-13#MA0057.1-20.006806193.239750.724710ACTTCCTCTTCCTTCCCCCTAC-
PEND#MA0127.100.006806193.239750.724710ACTTCCTCTTCCACTTCTTATT+
id1#MA0120.1-10.007271323.461150.724711ACTTCCTCTTCCTTTTCCTTTTCG+
Ar#MA0007.160.007622373.628250.724712ACTTCCTCTTCCATAAGAACACCCTGTACCCGCC+
Trl#MA0205.1-20.009401654.475190.81260510ACTTCCTCTTCCTTGCTCTCTC+
ELF5#MA0136.110.01167755.558480.9252018ACTTCCTCTTCCTACTTCCTT+
ETS1#MA0098.1-10.01282616.105230.9283166ACTTCCTCTTCCCTTCCG+
GCR2#MA0305.1-60.0144296.868230.9283166ACTTCCTCTTCCGCTTCCT+
FEV#MA0156.100.0146466.97150.9283168ACTTCCTCTTCCATTTCCTG-
Eip74EF#MA0026.1-70.02007299.554710.9986915ACTTCCTCTTCCCTTCCGG-
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