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MacroAPE 1083:7-TTTYTTTTTTCTG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;29.88;601.584;99.6;1260.936!2;1.992;143.424;121.512;1725.072!3;89.64;67.728;302.784;1531.848!4;45.816;876.48;322.704;747.0!5;225.096;505.968...")
 
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-109I6;0.112957!10455-106G5;0.197687!10534-107G3;0.948415!10429-106D6;0.470069!10464-106H5;0.10982!10827-111C8;0.195168!10789-110H6;0.912712!10828-111C9;0.579018!10788-110H5;0.536549!10792-110H9;0.61663!10765-110E9;0.998324!10829-111D1;0.881797!10830-111D2;0.87056!10831-111D3;0.905992!10832-111D4;0.887279!10833-111D5;0.631472!10764-110E8;0.382981!10770-110F5;0.249938!10399-106A3;0.296176!10400-106A4;0.200836!10405-106A9;0.313565!10834-111D6;0.299392!10835-111D7;0.536709!10836-111D8;0.892306!10837-111D9;0.620595!10699-109G6;0.122583!10802-111A1;0.42038!10796-110I4;0.403244!10010-101C1;0.0127418!10810-111A9;0.154727!10421-106C7;0.053381!10708-109H6;0.577692!12235-129G3;0.0657851!12236-129G4;0.0782211!12237-129G5;0.0703901!10167-103B5;0.337965!10151-102I7;0.424511!10428-106D5;0.534893!10795-110I3;0.629896!10805-111A4;0.50737!10052-101G7;0.0173221!10189-103D9;0.436914!10589-108D4;0.25185!10425-106D2;0.10435!10427-106D4;0.00707806!10702-109G9;0.602107!10432-106D9;0.693958!10496-107C1;0.0395896!10718-109I7;0.254846!10011-101C2;0.80045!10053-101G8;0.391586!10686-109F2;0.907676!10084-102B3;0.711911!10012-101C3;0.513247!10085-102B4;0.422661!10482-107A5;0.713068!10419-106C5;0.0181506!10080-102A8;0.00201252!10760-110E4;0.834597!10709-109H7;0.180968!10710-109H8;0.0132775!10703-109H1;0.00324873!10719-109I8;0.0129685!10642-109A3;0.0330212!10177-103C6;0.0556151!10164-103B2;0.955639!10173-103C2;0.672107!10166-103B4;0.186092!10083-102B2;0.283945!10188-103D8;0.484331!10552-107I3;0.654162!10553-107I4;0.00913777!10013-101C4;0.0100574!10536-107G5;0.322732!10618-108G6;0.107552!10423-106C9;0.428997!10785-110H2;0.68661!12238-129G6;0.0949885!12239-129G7;0.00116679!12240-129G8;0.013796!10416-106C2;6.6517e-05!10801-110I9;0.833195!10766-110F1;0.441864!10824-111C5;0.399337!10825-111C6;0.400324!10826-111C7;0.339802!10454-106G4;0.403862!10409-106B4;0.21367!10638-108I8;0.466967!10636-108I6;0.0244812!10513-107D9;0.0168847!10420-106C6;0.273529!10082-102B1;0.00681504!10014-101C5;0.859513!10070-101I7;0.955037!10452-106G2;0.635873!10453-106G3;0.0532011!10449-106F8;0.144311!10042-101F6;0.141829!10069-101I6;0.585539!10193-103E4;0.260425!10631-108I1;0.728678!10438-106E6;0.266208!10488-107B2;0.00864948!10196-103E7;0.252997!10071-101I8;0.154739!10071-101I8;0.110751!10041-101F5;0.404291!10451-106G1;0.029847!10450-106F9;0.0178266!10604-108F1;0.00466562!10605-108F2;0.131153!10606-108F3;0.318857!10603-108E9;0.170814!10497-107C2;0.379058!10448-106F7;0.0366983!10643-109A4;0.0477674!10426-106D3;0.00215966!10431-106D8;0.537892!10197-103E8;0.074394!10443-106F2;0.372059!10815-111B5;0.267712!10816-111B6;0.0693179!10817-111B7;0.04696!10015-101C6;0.0610816!10410-106B5;0.492359!10054-101G9;0.266728!10758-110E2;0.0800057!10711-109H9;0.924214!10040-101F4;0.188746!10470-106I2;0.55615!10415-106C1;0.116636!10198-103E9;0.290316!10614-108G2;0.618987!10612-108F9;0.192601!10549-107H9;0.0531395!10615-108G3;0.0650056!10487-107B1;0.00750199!10433-106E1;0.526745!10688-109F4;0.762013!10444-106F3;0.137548!10444-106F3;0.483624!10485-107A8;0.509889!10413-106B8;0.732816!10175-103C4;0.76087!10161-103A8;0.814393!12131-128D7;0.754096!10624-108H3;0.437755!10712-109I1;0.0420451!10205-103F7;0.153656!10206-103F8;0.21051!10207-103F9;0.954008!10050-101G5;0.989764!10051-101G6;0.367324!10016-101C7;0.678438!10046-101G1;0.949821!10778-110G4;0.586669!10633-108I3;0.11761!10818-111B8;0.0580423!10819-111B9;0.18021!10820-111C1;0.179065!10484-107A7;0.182135!10808-111A7;0.00624215!10169-103B7;0.72958!10153-102I9;0.452984!13425-144D5;0.511549!13433-144E4;0.00436632!13437-144E8;0.000594088!11904-125F5;0.00179913!11905-125F6;0.866705!10039-101F3;0.116208!10791-110H8;0.51634!10017-101C8;0.166526!10045-101F9;0.740198!10509-107D5;0.510152!10839-111E2;0.259746!10692-109F8;0.636766!10079-102A7;0.00921191!10078-102A6;0.238028!10721-110A1;0.937412!10569-108B2;0.188859!10570-108B3;0.0889112!10571-108B4;0.512736!10647-109A8;0.0920578!10752-110D5;0.327085!10782-110G8;0.684575!10726-110A6;0.0467947!10018-101C9;0.0289212!10086-102B5;0.200575!10182-103D2;0.0703824!10165-103B3;0.881199!10499-107C4;0.605534!10408-106B3;0.121958!10019-101D1;0.289561!10068-101I5;0.186518!10075-102A3;0.652073!10077-102A5;0.125994!10727-110A7;0.128273!10775-110G1;0.11897!10412-106B7;0.199623!12231-129F8;0.403451!12232-129F9;0.48574!12233-129G1;0.886583!12234-129G2;0.821136!10414-106B9;0.140665!10170-103B8;0.0147291!10183-103D3;0.835093!10150-102I6;0.665916!10174-103C3;0.523676!10155-103A2;0.867637!10038-101F2;0.563872!10838-111E1;0.376163!10759-110E3;0.0242651!10514-107E1;0.304048!10465-106H6;0.00765053!10691-109F7;0.0661218!10843-111E6;0.931917!10844-111E7;0.00226667!11747-123G1;0.0262528!11748-123G2;0.00114108!11749-123G3;0.0271929!11750-123G4;0.00199215!11751-123G5;0.235055!11840-124H4;0.311864!11752-123G6;0.0303025!11753-123G7;0.0634404!11754-123G8;0.016829!11755-123G9;0.0386298!11756-123H1;0.563902!11833-124G6;0.145227!11760-123H5;0.044125!11836-124G9;0.0862999!11758-123H3;0.000356701!11835-124G8;0.00394204!11762-123H7;0.0930068!11838-124H2;0.604272!11757-123H2;0.702123!11759-123H4;0.0515247!11761-123H6;0.00692102!11842-124H6;0.44892!11837-124H1;0.0193651!10568-108B1;0.0411423!13230-141I8;0.943275!13231-141I9;0.00289389!10696-109G3;0.00873679!10493-107B7;0.543578!10494-107B8;0.470455!10850-111F4;0.260187!10851-111F5;0.471805!10852-111F6;0.864413!10853-111F7;0.638731!10854-111F8;0.300983!10855-111F9;0.912106!10856-111G1;0.68581!10847-111F1;0.78095!10846-111E9;0.730103!10848-111F2;0.454332!10845-111E8;0.256342!10857-111G2;0.479115!10858-111G3;0.0194951!10156-103A3;0.868984!11901-125F2;0.702653!11902-125F3;0.200317!11903-125F4;0.0941151!10689-109F5;0.184836!10648-109A9;0.44352!10784-110H1;0.553565!10744-110C6;0.0832808!10772-110F7;0.203948!10474-106I6;0.310224!10600-108E6;0.348923!10684-109E9;0.158247!12226-129F3;0.629826!12227-129F4;0.0596831!10508-107D4;0.0190821!10539-107G8;0.00475739!10607-108F4;0.127654!10555-107I6;0.00696632!10774-110F9;0.0816449!10637-108I7;0.0108659!10663-109C6;0.0387719!10728-110A8;0.111002!10729-110A9;0.0158099!10430-106D7;0.155129!10730-110B1;0.14891!10813-111B3;0.000300635!10812-111B2;0.208777!10037-101F1;0.102647!10172-103C1;0.470923!10163-103B1;0.826648!10076-102A4;0.663471!10073-102A1;0.753595!10036-101E9;0.930112!10195-103E6;0.531021!10277-104E7;0.698046!10434-106E2;0.640739!10550-107I1;0.0319479!10545-107H5;0.101799!10544-107H4;0.494983!10704-109H2;0.180941!10510-107D6;0.702807!10558-107I9;0.133849!10020-101D2;0.0224976!10732-110B3;0.268219!10049-101G4;0.710262!10698-109G5;0.251117!10437-106E5;0.588957!10417-106C3;0.0272039!10035-101E8;0.107204!10171-103B9;0.596662!10157-103A4;0.9771!10034-101E7;0.559298!10072-101I9;0.559352!10199-103F1;0.480533!10200-103F2;0.974363!10697-109G4;0.400179!10723-110A3;0.164855!10179-103C8;0.100867!10160-103A7;0.709915!10180-103C9;0.605542!10162-103A9;0.4356!10021-101D3;0.706101!10840-111E3;0.0012041!10706-109H4;0.568625!10033-101E6;0.222508!10032-101E5;0.540544!10490-107B4;0.515039!10439-106E7;0.0176499!10022-101D4;0.0531215!10176-103C5;0.447529!10469-106I1;0.760848!10067-101I4;0.192167!10411-106B6;0.290087!10471-106I3;0.737154!10030-101E3;0.323021!10475-106I7;0.643059!10787-110H4;0.00425671!10477-106I9;0.299067!10695-109G2;0.473568!11771-123I7;0.57681!11772-123I8;0.452751!11773-123I9;0.942593!10093-102C3;0.533!10442-106F1;0.536832!10442-106F1;0.600455!10201-103F3;0.728015!10639-108I9;0.400181!11843-124H7;0.0247798!11841-124H5;0.133709!10693-109F9;0.109915!10436-106E4;0.0209716!10483-107A6;0.00827279!10282-104F3;0.133953!10023-101D5;0.314026!10066-101I3;0.711343!10065-101I2;0.047636!10800-110I8;0.0775071!10610-108F7;0.00127903!10841-111E4;0.00308164!10541-107H1;0.054218!10842-111E5;0.0579327!10562-108A4;0.00738593!10024-101D6;5.61514e-05!10064-101I1;0.717814!10609-108F6;0.180748!10048-101G3;0.000299158!10781-110G7;0.900936!10181-103D1;0.022269!10159-103A6;0.637905!10056-101H2;0.539528!10737-110B8;0.140158!10025-101D7;0.67823!10044-101F8;0.108192!10424-106D1;0.0265716!10463-106H4;0.982747!10616-108G4;0.172058!10486-107A9;0.398879!10062-101H8;0.0108407!10202-103F4;0.480258!10158-103A5;0.229599!10441-106E9;0.809822!10031-101E4;0.117429!10063-101H9;0.396135!10063-101H9;0.958215!11763-123H8;0.0418399!11765-123I1;0.00106436!11768-123I4;0.0804437!10807-111A6;0.00626339!10790-110H7;0.00244998!10798-110I6;0.0252615!10786-110H3;0.0306928!10591-108D6;0.0251784!10593-108D8;0.200554!10590-108D5;0.0325152!10026-101D8;0.0152977!10096-102C6;0.852918!10168-103B6;0.00390365!10154-103A1;0.973023!10209-103G2;0.756793!10061-101H7;0.463191!10027-101D9;0.959174!10043-101F7;0.682777!10783-110G9;0.37982!10028-101E1;0.0364083!10060-101H6;0.16294!10203-103F5;0.29311!10059-101H5;0.383929!10047-101G2;0.127773!10029-101E2;0.122839!10058-101H4;0.101282!10418-106C4;0.233028!10492-107B6;0.0791159!10694-109G1;0.0856886!10797-110I5;0.866337!10057-101H3;0.0128117!10100-102D1;0.216485!10055-101H1;0.603143!10204-103F6;0.503217!10191-103E2;0.805!10563-108A5;0.0806914
|name=7-TTTYTTTTTTCTG,CNhs13237,BestGuess:UBIP1_f1_HM09(0.704218216223649),T:1992.0(71.45%),B:26961.6(61.21%),P:1e-29
|name=7-TTTYTTTTTTCTG,CNhs13237,BestGuess:UBIP1_f1_HM09(0.704218216223649),T:1992.0(71.45%),B:26961.6(61.21%),P:1e-29
|tomtom_result=id1#MA0120.1;0;0.000342318;0.162943;0.325116;12;TTTCTTTTTTCTG;TTTTCCTTTTCG;+!AZF1#MA0277.1;0;0.00126437;0.60184;0.461535;9;TTTCTTTTTTCTG;TTTCTTTTT;-!hb#MA0049.1;-1;0.00145786;0.693944;0.461535;10;TTTCTTTTTTCTG;TTTTTTATGC;-!NDT80#MA0343.1;0;0.00283449;1.34922;0.54117;13;TTTCTTTTTTCTG;TTGCGTTTTTGTGGCCGGAAA;-!Gata1#MA0035.2;-3;0.00314586;1.49743;0.54117;10;TTTCTTTTTTCTG;TTCTTATCTGT;-!HMG-I/Y#MA0045.1;3;0.00341882;1.62736;0.54117;13;TTTCTTTTTTCTG;GTTTTTCCATTTGTTG;-!squamosa#MA0082.1;0;0.00417532;1.98745;0.566501;13;TTTCTTTTTTCTG;ATTTCCATTTTTGG;-!CUP2#MA0287.1;-2;0.00542464;2.58213;0.644006;11;TTTCTTTTTTCTG;CATTTCTGCTG;-!EDS1#MA0294.1;-4;0.00772365;3.67646;0.81141;9;TTTCTTTTTTCTG;ATTTTTCCG;-!SFL1#MA0377.1;1;0.00874438;4.16232;0.81141;13;TTTCTTTTTTCTG;TTTTATTTCTTCTATTCTCTA;-!Klf4#MA0039.1;1;0.00939776;4.47333;0.81141;9;TTTCTTTTTTCTG;CCTTCCTTTA;-!br_Z1#MA0010.1;2;0.0145733;6.93688;0.997635;12;TTTCTTTTTTCTG;GATTTGTCTATTAC;-!Evi1#MA0029.1;1;0.0187208;8.9111;0.997635;13;TTTCTTTTTTCTG;TGTTATCTTATCTT;-!YRR1#MA0439.1;-3;0.0197956;9.42269;0.997635;10;TTTCTTTTTTCTG;CTTATCTCCGC;+!YPR196W#MA0437.1;-4;0.02062;9.81511;0.997635;9;TTTCTTTTTTCTG;ATTTCTCCG;+
}}
}}

Latest revision as of 14:13, 7 September 2012

Full Name: 7-TTTYTTTTTTCTG,CNhs13237,BestGuess:UBIP1_f1_HM09(0.704218216223649),T:1992.0(71.45%),B:26961.6(61.21%),P:1e-29

Motif matrix
POACGT
129.88601.58499.61260.936
21.992143.424121.5121725.072
389.6467.728302.7841531.848
445.816876.48322.704747.0
5225.096505.968131.4721129.464
6177.288488.04117.5281209.144
7169.32304.776382.4641135.44
8370.512225.096125.4961270.896
9354.576330.672282.8641023.888
1045.816129.48129.481687.224
111.9921912.3275.6961.992
12209.161.99229.881750.968
1327.8881.9921960.1281.992

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
id1#MA0120.100.0003423180.1629430.32511612TTTCTTTTTTCTGTTTTCCTTTTCG+
AZF1#MA0277.100.001264370.601840.4615359TTTCTTTTTTCTGTTTCTTTTT-
hb#MA0049.1-10.001457860.6939440.46153510TTTCTTTTTTCTGTTTTTTATGC-
NDT80#MA0343.100.002834491.349220.5411713TTTCTTTTTTCTGTTGCGTTTTTGTGGCCGGAAA-
Gata1#MA0035.2-30.003145861.497430.5411710TTTCTTTTTTCTGTTCTTATCTGT-
HMG-I/Y#MA0045.130.003418821.627360.5411713TTTCTTTTTTCTGGTTTTTCCATTTGTTG-
squamosa#MA0082.100.004175321.987450.56650113TTTCTTTTTTCTGATTTCCATTTTTGG-
CUP2#MA0287.1-20.005424642.582130.64400611TTTCTTTTTTCTGCATTTCTGCTG-
EDS1#MA0294.1-40.007723653.676460.811419TTTCTTTTTTCTGATTTTTCCG-
SFL1#MA0377.110.008744384.162320.8114113TTTCTTTTTTCTGTTTTATTTCTTCTATTCTCTA-
Klf4#MA0039.110.009397764.473330.811419TTTCTTTTTTCTGCCTTCCTTTA-
br_Z1#MA0010.120.01457336.936880.99763512TTTCTTTTTTCTGGATTTGTCTATTAC-
Evi1#MA0029.110.01872088.91110.99763513TTTCTTTTTTCTGTGTTATCTTATCTT-
YRR1#MA0439.1-30.01979569.422690.99763510TTTCTTTTTTCTGCTTATCTCCGC+
YPR196W#MA0437.1-40.020629.815110.9976359TTTCTTTTTTCTGATTTCTCCG+
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