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MacroAPE 1083:5-GCGATTCAAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;40.262;45.663;364.813;40.262!2;56.465;340.754;46.645;47.136!3;62.357;51.555;329.952;47.136!4;323.078;59.902;63.339;44.681!5;56.465;52.046;45...")
 
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51237!12177-128I8;0.00128521!12182-129A4;0.00207401!12183-129A5;0.000428325!12184-129A6;0.00157828!10809-111A8;0.00480769!10597-108E3;0.115734!10717-109I6;0.326128!10455-106G5;0.000128046!10534-107G3;0.209987!10429-106D6;0.020137!10464-106H5;0.0915957!10827-111C8;0.088818!10789-110H6;0.550187!10828-111C9;0.647881!10788-110H5;0.9272!10792-110H9;0.327218!10765-110E9;0.99592!10829-111D1;0.232902!10830-111D2;0.273966!10831-111D3;0.762218!10832-111D4;0.592874!10833-111D5;0.0281227!10764-110E8;0.101572!10770-110F5;0.212557!10399-106A3;0.812615!10400-106A4;0.0874755!10405-106A9;0.133948!10834-111D6;0.0424934!10835-111D7;0.0615917!10836-111D8;0.098441!10837-111D9;0.106752!10699-109G6;0.307789!10802-111A1;0.642192!10796-110I4;0.863656!10010-101C1;0.0220258!10810-111A9;0.29798!10421-106C7;0.0406428!10708-109H6;0.108817!12235-129G3;0.0007873!12236-129G4;0.612973!12237-129G5;0.0905932!10167-103B5;0.172321!10151-102I7;0.280834!10428-106D5;0.392187!10795-110I3;0.667023!10805-111A4;0.131885!10052-101G7;0.0513827!10189-103D9;0.230389!10589-108D4;0.971307!10425-106D2;0.774607!10427-106D4;0.00903454!10702-109G9;0.0761349!10432-106D9;0.343371!10496-107C1;0.0151186!10718-109I7;0.00049541!10011-101C2;0.113121!10053-101G8;0.236847!10686-109F2;0.0048394!10084-102B3;0.00182848!10012-101C3;0.325238!10085-102B4;0.299927!10482-107A5;0.460385!10419-106C5;0.0372789!10080-102A8;0.0363594!10760-110E4;0.951035!10709-109H7;0.0214211!10710-109H8;0.160687!10703-109H1;0.000157262!10719-109I8;0.428095!10642-109A3;0.0286827!10177-103C6;0.0146038!10164-103B2;0.271832!10173-103C2;0.143089!10166-103B4;0.182693!10083-102B2;0.186362!10188-103D8;0.0926772!10552-107I3;0.227729!10553-107I4;0.0372804!10013-101C4;0.0115216!10536-107G5;0.451397!10618-108G6;0.691852!10423-106C9;0.0293322!10785-110H2;0.0288282!12238-129G6;0.165743!12239-129G7;0.65549!12240-129G8;0.253882!10416-106C2;0.344186!10801-110I9;0.443921!10766-110F1;0.867088!10824-111C5;0.823637!10825-111C6;0.319794!10826-111C7;0.366838!10454-106G4;0.290169!10409-106B4;0.110419!10638-108I8;0.432635!10636-108I6;0.0100332!10513-107D9;0.00951376!10420-106C6;0.000930793!10082-102B1;0.00860271!10014-101C5;0.853393!10070-101I7;0.643366!10452-106G2;0.695518!10453-106G3;0.106788!10449-106F8;0.063314!10042-101F6;0.0673968!10069-101I6;0.146606!10193-103E4;0.199722!10631-108I1;0.207769!10438-106E6;0.0403786!10488-107B2;0.10899!10196-103E7;0.220326!10071-101I8;0.033596!10071-101I8;0.149189!10041-101F5;0.601928!10451-106G1;0.361831!10450-106F9;0.00993544!10604-108F1;0.0324837!10605-108F2;0.0178555!10606-108F3;0.149271!10603-108E9;0.0595121!10497-107C2;0.0417785!10448-106F7;0.672143!10643-109A4;0.0392355!10426-106D3;0.0146453!10431-106D8;0.000198357!10197-103E8;0.0010016!10443-106F2;0.0535198!10815-111B5;0.0180609!10816-111B6;0.00100716!10817-111B7;0.00189399!10015-101C6;0.0043448!10410-106B5;0.620698!10054-101G9;0.0947913!10758-110E2;0.108157!10711-109H9;0.0128637!10040-101F4;0.000159928!10470-106I2;0.293359!10415-106C1;0.0415723!10198-103E9;0.285984!10614-108G2;0.160984!10612-108F9;0.155666!10549-107H9;0.197518!10615-108G3;0.0259842!10487-107B1;0.19232!10433-106E1;0.976183!10688-109F4;0.735765!10444-106F3;0.163776!10444-106F3;0.0153395!10485-107A8;0.0126586!10413-106B8;0.000955928!10175-103C4;0.531533!10161-103A8;0.308636!12131-128D7;0.325599!10624-108H3;0.421195!10712-109I1;0.0131101!10205-103F7;0.414773!10206-103F8;0.0315246!10207-103F9;0.116539!10050-101G5;0.124403!10051-101G6;0.93414!10016-101C7;0.0573521!10046-101G1;0.115886!10778-110G4;0.438601!10633-108I3;0.0801575!10818-111B8;0.00115429!10819-111B9;0.0135457!10820-111C1;0.0117012!10484-107A7;0.00961825!10808-111A7;0.0973367!10169-103B7;0.00563184!10153-102I9;0.365274!13425-144D5;0.360815!13433-144E4;0.152065!13437-144E8;0.186259!11904-125F5;0.225899!11905-125F6;0.616087!10039-101F3;0.993544!10791-110H8;0.298874!10017-101C8;0.00262085!10045-101F9;0.0923607!10509-107D5;0.785023!10839-111E2;0.973822!10692-109F8;0.805585!10079-102A7;9.48175e-05!10078-102A6;0.069889!10721-110A1;0.0990254!10569-108B2;0.0112295!10570-108B3;0.116133!10571-108B4;0.0402887!10647-109A8;0.753255!10752-110D5;0.000427382!10782-110G8;0.100835!10726-110A6;0.688677!10018-101C9;0.000791309!10086-102B5;0.00615158!10182-103D2;0.571842!10165-103B3;0.410834!10499-107C4;0.311453!10408-106B3;0.0531799!10019-101D1;0.0796502!10068-101I5;0.20528!10075-102A3;0.163564!10077-102A5;0.00562575!10727-110A7;0.0357775!10775-110G1;0.274434!10412-106B7;0.0351932!12231-129F8;0.000780443!12232-129F9;0.829259!12233-129G1;0.738279!12234-129G2;0.771197!10414-106B9;0.815154!10170-103B8;0.0271859!10183-103D3;0.344507!10150-102I6;0.39774!10174-103C3;0.413383!10155-103A2;0.130439!10038-101F2;0.204778!10838-111E1;0.221391!10759-110E3;0.0181408!10514-107E1;0.00238334!10465-106H6;0.088403!10691-109F7;0.550688!10843-111E6;0.684644!10844-111E7;0.512171!11747-123G1;0.367675!11748-123G2;0.334783!11749-123G3;0.896554!11750-123G4;0.257473!11751-123G5;0.573634!11840-124H4;0.211297!11752-123G6;0.406907!11753-123G7;0.00391866!11754-123G8;0.97728!11755-123G9;0.39397!11756-123H1;0.298695!11833-124G6;0.215727!11760-123H5;2.15322e-09!11836-124G9;0.244596!11758-123H3;0.478919!11835-124G8;0.514115!11762-123H7;0.147535!11838-124H2;0.115904!11757-123H2;0.253088!11759-123H4;0.0347476!11761-123H6;0.53274!11842-124H6;0.402649!11837-124H1;0.265825!10568-108B1;0.666257!13230-141I8;9.93877e-06!13231-141I9;0.843662!10696-109G3;0.829867!10493-107B7;0.0368283!10494-107B8;0.0998346!10850-111F4;0.105536!10851-111F5;0.0136421!10852-111F6;0.0991236!10853-111F7;0.570329!10854-111F8;0.0496936!10855-111F9;0.0222994!10856-111G1;0.0629306!10847-111F1;0.306259!10846-111E9;1.43874e-05!10848-111F2;0.0205871!10845-111E8;0.00128211!10857-111G2;0.0101836!10858-111G3;8.27559e-05!10156-103A3;0.000128566!11901-125F2;0.445908!11902-125F3;0.00935367!11903-125F4;0.00515882!10689-109F5;0.00243607!10648-109A9;0.396484!10784-110H1;0.00032087!10744-110C6;0.00906008!10772-110F7;0.713892!10474-106I6;0.0270299!10600-108E6;0.806506!10684-109E9;2.0122e-06!12226-129F3;0.0131713!12227-129F4;0.142434!10508-107D4;0.969448!10539-107G8;0.458278!10607-108F4;0.107433!10555-107I6;0.23711!10774-110F9;0.509748!10637-108I7;0.278573!10663-109C6;0.331087!10728-110A8;0.00885501!10729-110A9;0.0486142!10430-106D7;0.232852!10730-110B1;0.00249543!10813-111B3;0.666755!10812-111B2;0.771674!10037-101F1;0.35718!10172-103C1;0.245528!10163-103B1;0.450581!10076-102A4;0.442952!10073-102A1;0.389769!10036-101E9;0.844132!10195-103E6;0.292679!10277-104E7;0.247285!10434-106E2;0.202306!10550-107I1;0.0544516!10545-107H5;0.00770571!10544-107H4;0.0155773!10704-109H2;0.000693355!10510-107D6;0.252521!10558-107I9;0.00128937!10020-101D2;0.180397!10732-110B3;0.153111!10049-101G4;0.0125633!10698-109G5;0.000482241!10437-106E5;0.0417788!10417-106C3;0.143853!10035-101E8;0.0404281!10171-103B9;0.259903!10157-103A4;0.403392!10034-101E7;0.38755!10072-101I9;0.272033!10199-103F1;0.833517!10200-103F2;5.42726e-05!10697-109G4;0.29817!10723-110A3;0.542885!10179-103C8;0.00186183!10160-103A7;0.0902693!10180-103C9;0.102852!10162-103A9;0.00611434!10021-101D3;0.0275444!10840-111E3;0.463731!10706-109H4;0.21618!10033-101E6;0.0549112!10032-101E5;0.201453!10490-107B4;0.2606!10439-106E7;0.0174586!10022-101D4;0.0135072!10176-103C5;0.187634!10469-106I1;0.192847!10067-101I4;0.004351!10411-106B6;0.819181!10471-106I3;0.00872188!10030-101E3;0.0619607!10475-106I7;0.0669437!10787-110H4;0.197178!10477-106I9;0.00359578!10695-109G2;0.00851577!11771-123I7;0.709108!11772-123I8;0.324716!11773-123I9;0.901494!10093-102C3;0.251!10442-106F1;0.000251045!10442-106F1;0.189748!10201-103F3;0.36215!10639-108I9;0.082167!11843-124H7;0.0496592!11841-124H5;0.8531!10693-109F9;0.146101!10436-106E4;0.245486!10483-107A6;0.00961139!10282-104F3;0.00636504!10023-101D5;0.232784!10066-101I3;0.246509!10065-101I2;0.847398!10800-110I8;0.748343!10610-108F7;0.00271077!10841-111E4;0.0320168!10541-107H1;0.063156!10842-111E5;0.00246803!10562-108A4;0.586109!10024-101D6;0.661843!10064-101I1;0.330279!10609-108F6;0.809245!10048-101G3;0.442674!10781-110G7;0.135627!10181-103D1;0.424303!10159-103A6;0.29772!10056-101H2;0.429495!10737-110B8;0.54307!10025-101D7;0.176015!10044-101F8;0.616371!10424-106D1;0.875903!10463-106H4;0.370477!10616-108G4;0.149942!10486-107A9;0.424191!10062-101H8;0.877052!10202-103F4;0.931726!10158-103A5;0.0112762!10441-106E9;0.242357!10031-101E4;0.00275986!10063-101H9;0.28819!10063-101H9;0.76747!11763-123H8;0.161967!11765-123I1;0.586375!11768-123I4;0.455976!10807-111A6;0.608426!10790-110H7;0.00497047!10798-110I6;0.104421!10786-110H3;0.00761919!10591-108D6;0.0952672!10593-108D8;0.127982!10590-108D5;0.13632!10026-101D8;0.122235!10096-102C6;0.86174!10168-103B6;0.696101!10154-103A1;0.254157!10209-103G2;0.246456!10061-101H7;0.20282!10027-101D9;0.821936!10043-101F7;0.235486!10783-110G9;0.407796!10028-101E1;0.0224796!10060-101H6;0.00407955!10203-103F5;0.178422!10059-101H5;0.262295!10047-101G2;0.273186!10029-101E2;0.49511!10058-101H4;0.0494971!10418-106C4;0.305943!10492-107B6;0.00112924!10694-109G1;8.01134e-05!10797-110I5;0.125609!10057-101H3;0.595002!10100-102D1;0.539989!10055-101H1;0.341252!10204-103F6;0.445796!10191-103E2;0.24044!10563-108A5;0.31643
|name=5-GCGATTCAAA,CNhs11280,BestGuess:POU5F1.p2.SwissRegulon.nucfreq(0.660812030307913),T:491.0(34.75%),B:10290.7(21.81%),P:1e-28
|name=5-GCGATTCAAA,CNhs11280,BestGuess:POU5F1.p2.SwissRegulon.nucfreq(0.660812030307913),T:491.0(34.75%),B:10290.7(21.81%),P:1e-28
|tomtom_result=ARR1#MA0274.1;-3;0.00584494;2.78219;1;7;GCGATTCAAA;ATTCAAGT;-!Fos#MA0099.1;0;0.013289;6.32558;1;8;GCGATTCAAA;GTGAGTCA;+!Sox2#MA0143.1;5;0.0150539;7.16564;1;10;GCGATTCAAA;CCTTTGTTATGCAAA;+
}}
}}

Latest revision as of 14:27, 7 September 2012

Full Name: 5-GCGATTCAAA,CNhs11280,BestGuess:POU5F1.p2.SwissRegulon.nucfreq(0.660812030307913),T:491.0(34.75%),B:10290.7(21.81%),P:1e-28

Motif matrix
POACGT
140.26245.663364.81340.262
256.465340.75446.64547.136
362.35751.555329.95247.136
4323.07859.90263.33944.681
556.46552.04645.663336.826
650.08239.2844.681356.957
745.663324.0659.90261.375
8345.66446.64550.57348.118
9372.66945.17237.80735.352
10342.22748.60947.13653.028

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ARR1#MA0274.1-30.005844942.7821917GCGATTCAAAATTCAAGT-
Fos#MA0099.100.0132896.3255818GCGATTCAAAGTGAGTCA+
Sox2#MA0143.150.01505397.16564110GCGATTCAAACCTTTGTTATGCAAA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:5-GCGATTCAAA&oldid=2134369"