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MacroAPE 1083:5-WCCGWTAR: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;414.343;1.129;248.38;464.019!2;141.125;604.015;177.253;206.607!3;68.869;860.298;198.704;1.129!4;93.707;3.387;974.327;57.579!5;401.924;167.09...")
 
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7!10464-106H5;0.0363396!10827-111C8;0.0710399!10789-110H6;0.00482836!10828-111C9;0.0314834!10788-110H5;0.0355531!10792-110H9;0.0397209!10765-110E9;0.0922777!10829-111D1;0.014023!10830-111D2;0.0205875!10831-111D3;0.0352967!10832-111D4;0.00106077!10833-111D5;0.00570725!10764-110E8;0.00545642!10770-110F5;0.12426!10399-106A3;0.0418563!10400-106A4;0.0537176!10405-106A9;0.0374342!10834-111D6;0.0387892!10835-111D7;0.00747075!10836-111D8;0.128096!10837-111D9;0.00585137!10699-109G6;0.0130019!10802-111A1;0.0312486!10796-110I4;0.0321022!10010-101C1;0.293211!10810-111A9;0.150019!10421-106C7;0.108232!10708-109H6;0.0808672!12235-129G3;0.62691!12236-129G4;0.81776!12237-129G5;0.895656!10167-103B5;0.980394!10151-102I7;0.0819121!10428-106D5;0.120125!10795-110I3;0.816519!10805-111A4;0.122945!10052-101G7;0.0578231!10189-103D9;0.109161!10589-108D4;0.738752!10425-106D2;0.786672!10427-106D4;0.507542!10702-109G9;0.0957635!10432-106D9;0.0881511!10496-107C1;0.187876!10718-109I7;0.446731!10011-101C2;0.00775021!10053-101G8;0.101942!10686-109F2;0.260023!10084-102B3;0.959901!10012-101C3;0.0992122!10085-102B4;0.0932436!10482-107A5;0.207695!10419-106C5;0.598783!10080-102A8;0.761316!10760-110E4;0.141003!10709-109H7;0.350255!10710-109H8;0.0717073!10703-109H1;0.41996!10719-109I8;0.442307!10642-109A3;0.178719!10177-103C6;0.297514!10164-103B2;0.0778502!10173-103C2;0.114479!10166-103B4;0.105379!10083-102B2;0.122773!10188-103D8;0.162976!10552-107I3;0.149868!10553-107I4;0.505034!10013-101C4;0.621212!10536-107G5;0.0373044!10618-108G6;0.74726!10423-106C9;0.0495275!10785-110H2;0.277897!12238-129G6;0.153129!12239-129G7;0.554815!12240-129G8;0.0495278!10416-106C2;0.702172!10801-110I9;0.112406!10766-110F1;0.0174997!10824-111C5;0.0162976!10825-111C6;0.0759794!10826-111C7;0.102006!10454-106G4;0.0847283!10409-106B4;0.144932!10638-108I8;0.0121622!10636-108I6;0.114471!10513-107D9;0.187122!10420-106C6;0.184055!10082-102B1;0.851625!10014-101C5;0.243882!10070-101I7;0.0361043!10452-106G2;0.0560879!10453-106G3;0.517318!10449-106F8;0.463172!10042-101F6;0.436119!10069-101I6;0.0863038!10193-103E4;0.210707!10631-108I1;0.0772043!10438-106E6;0.0821791!10488-107B2;0.18903!10196-103E7;0.865085!10071-101I8;0.0293973!10071-101I8;0.350672!10041-101F5;0.381217!10451-106G1;0.21866!10450-106F9;0.286587!10604-108F1;0.445678!10605-108F2;0.0646574!10606-108F3;0.136621!10603-108E9;0.0814614!10497-107C2;0.102167!10448-106F7;0.490592!10643-109A4;0.97093!10426-106D3;0.275243!10431-106D8;0.329437!10197-103E8;0.323374!10443-106F2;0.188635!10815-111B5;0.672606!10816-111B6;0.401516!10817-111B7;0.377466!10015-101C6;0.313603!10410-106B5;0.0546112!10054-101G9;0.708236!10758-110E2;0.0636903!10711-109H9;0.03945!10040-101F4;0.0268475!10470-106I2;0.0965095!10415-106C1;0.476126!10198-103E9;0.432562!10614-108G2;0.280231!10612-108F9;0.144324!10549-107H9;0.259263!10615-108G3;0.254197!10487-107B1;0.629923!10433-106E1;0.203772!10688-109F4;0.277307!10444-106F3;0.327737!10444-106F3;0.765635!10485-107A8;0.503728!10413-106B8;0.412337!10175-103C4;0.598015!10161-103A8;0.0459531!12131-128D7;0.0892622!10624-108H3;0.00482031!10712-109I1;0.934298!10205-103F7;0.0720246!10206-103F8;0.155222!10207-103F9;0.207246!10050-101G5;0.942914!10051-101G6;0.263894!10016-101C7;0.231888!10046-101G1;0.405666!10778-110G4;0.374464!10633-108I3;0.229691!10818-111B8;0.421546!10819-111B9;0.0259793!10820-111C1;0.031206!10484-107A7;0.0256644!10808-111A7;0.053605!10169-103B7;0.0349872!10153-102I9;0.161782!13425-144D5;0.120836!13433-144E4;0.126383!13437-144E8;0.110598!11904-125F5;0.351387!11905-125F6;0.026943!10039-101F3;0.0625057!10791-110H8;0.119357!10017-101C8;0.979525!10045-101F9;0.0448172!10509-107D5;0.0423985!10839-111E2;0.0103807!10692-109F8;0.794062!10079-102A7;0.502717!10078-102A6;0.19538!10721-110A1;0.271132!10569-108B2;0.0965447!10570-108B3;0.0682669!10571-108B4;0.0933233!10647-109A8;0.144413!10752-110D5;0.0377384!10782-110G8;0.00462136!10726-110A6;0.0973213!10018-101C9;0.260817!10086-102B5;0.514947!10182-103D2;0.157559!10165-103B3;0.112168!10499-107C4;0.100998!10408-106B3;0.123641!10019-101D1;0.0956856!10068-101I5;0.660032!10075-102A3;0.832648!10077-102A5;0.571205!10727-110A7;0.839955!10775-110G1;0.62972!10412-106B7;0.153883!12231-129F8;0.943668!12232-129F9;0.343955!12233-129G1;0.0185439!12234-129G2;0.178951!10414-106B9;0.125482!10170-103B8;0.267783!10183-103D3;0.0571389!10150-102I6;0.0813356!10174-103C3;0.0776053!10155-103A2;0.104289!10038-101F2;0.0998561!10838-111E1;0.0879843!10759-110E3;0.394452!10514-107E1;0.343727!10465-106H6;0.315456!10691-109F7;0.301859!10843-111E6;0.333503!10844-111E7;0.787764!11747-123G1;0.925942!11748-123G2;0.164166!11749-123G3;0.161741!11750-123G4;0.106001!11751-123G5;0.184099!11840-124H4;0.0997669!11752-123G6;0.0535279!11753-123G7;0.217132!11754-123G8;0.567667!11755-123G9;0.724946!11756-123H1;0.666761!11833-124G6;0.477323!11760-123H5;0.189553!11836-124G9;0.44211!11758-123H3;0.336127!11835-124G8;0.0342616!11762-123H7;0.0689683!11838-124H2;0.183145!11757-123H2;0.117351!11759-123H4;0.222077!11761-123H6;0.505116!11842-124H6;0.397096!11837-124H1;0.230564!10568-108B1;0.0663389!13230-141I8;0.745393!13231-141I9;0.0224368!10696-109G3;0.0466268!10493-107B7;0.37967!10494-107B8;0.254893!10850-111F4;0.499499!10851-111F5;0.99423!10852-111F6;0.886809!10853-111F7;0.604038!10854-111F8;0.0253382!10855-111F9;0.347593!10856-111G1;0.984869!10847-111F1;0.433134!10846-111E9;0.965613!10848-111F2;0.324259!10845-111E8;0.485576!10857-111G2;0.0422599!10858-111G3;0.286643!10156-103A3;0.187981!11901-125F2;0.0805354!11902-125F3;0.229856!11903-125F4;0.0776636!10689-109F5;0.0987705!10648-109A9;0.655114!10784-110H1;0.178612!10744-110C6;0.468613!10772-110F7;0.681414!10474-106I6;0.00697269!10600-108E6;0.593345!10684-109E9;0.293629!12226-129F3;0.656798!12227-129F4;0.705496!10508-107D4;0.300355!10539-107G8;0.828265!10607-108F4;0.928302!10555-107I6;0.656758!10774-110F9;0.949263!10637-108I7;0.16814!10663-109C6;0.810342!10728-110A8;0.571595!10729-110A9;0.105965!10430-106D7;0.239519!10730-110B1;0.110174!10813-111B3;0.98875!10812-111B2;0.362278!10037-101F1;0.0125527!10172-103C1;0.106982!10163-103B1;0.052995!10076-102A4;0.094403!10073-102A1;0.13377!10036-101E9;0.222058!10195-103E6;0.0999978!10277-104E7;0.0994664!10434-106E2;0.286182!10550-107I1;0.823243!10545-107H5;0.327885!10544-107H4;0.7466!10704-109H2;0.517185!10510-107D6;0.50544!10558-107I9;0.023002!10020-101D2;0.918711!10732-110B3;0.332038!10049-101G4;0.631391!10698-109G5;0.67038!10437-106E5;0.247703!10417-106C3;0.00176546!10035-101E8;0.523941!10171-103B9;0.084517!10157-103A4;0.0513854!10034-101E7;0.0977445!10072-101I9;0.0925942!10199-103F1;0.367323!10200-103F2;0.050552!10697-109G4;0.0600186!10723-110A3;0.393846!10179-103C8;0.79996!10160-103A7;0.189097!10180-103C9;0.150515!10162-103A9;0.376788!10021-101D3;0.296368!10840-111E3;0.599583!10706-109H4;0.0370192!10033-101E6;0.811536!10032-101E5;0.0834677!10490-107B4;0.0953526!10439-106E7;0.00718488!10022-101D4;0.0941908!10176-103C5;0.119864!10469-106I1;0.102047!10067-101I4;0.256771!10411-106B6;0.234922!10471-106I3;0.18123!10030-101E3;0.273816!10475-106I7;0.125691!10787-110H4;0.407146!10477-106I9;0.642289!10695-109G2;0.204104!11771-123I7;0.762439!11772-123I8;0.309367!11773-123I9;0.219845!10093-102C3;0.362533!10442-106F1;0.161478!10442-106F1;0.666783!10201-103F3;0.865549!10639-108I9;0.012393!11843-124H7;0.444128!11841-124H5;0.318408!10693-109F9;0.254548!10436-106E4;0.637497!10483-107A6;0.511379!10282-104F3;0.126232!10023-101D5;0.227127!10066-101I3;0.109092!10065-101I2;0.189002!10800-110I8;0.0595496!10610-108F7;0.602983!10841-111E4;0.740495!10541-107H1;0.411719!10842-111E5;0.659345!10562-108A4;0.31582!10024-101D6;0.452599!10064-101I1;0.144986!10609-108F6;0.277839!10048-101G3;0.47771!10781-110G7;0.0707682!10181-103D1;0.879262!10159-103A6;0.105221!10056-101H2;0.113048!10737-110B8;0.111142!10025-101D7;0.129546!10044-101F8;0.813003!10424-106D1;0.897016!10463-106H4;0.203354!10616-108G4;0.36709!10486-107A9;0.431819!10062-101H8;0.648136!10202-103F4;0.286277!10158-103A5;0.0810951!10441-106E9;0.0605246!10031-101E4;0.880701!10063-101H9;0.10109!10063-101H9;0.481192!11763-123H8;0.112047!11765-123I1;0.0724435!11768-123I4;0.0366321!10807-111A6;0.0540498!10790-110H7;0.189938!10798-110I6;0.195948!10786-110H3;0.75515!10591-108D6;0.171817!10593-108D8;0.0637016!10590-108D5;0.118069!10026-101D8;0.0276651!10096-102C6;0.30403!10168-103B6;0.00421155!10154-103A1;0.0658914!10209-103G2;0.0897045!10061-101H7;0.343128!10027-101D9;0.610123!10043-101F7;0.0883358!10783-110G9;0.282953!10028-101E1;0.0327367!10060-101H6;0.638683!10203-103F5;0.69667!10059-101H5;0.144278!10047-101G2;0.093455!10029-101E2;0.893355!10058-101H4;0.379517!10418-106C4;0.248651!10492-107B6;0.269422!10694-109G1;0.0585668!10797-110I5;0.595943!10057-101H3;0.194055!10100-102D1;0.107583!10055-101H1;0.0671361!10204-103F6;0.109469!10191-103E2;0.154405!10563-108A5;0.411078
|name=5-WCCGWTAR,CNhs13822,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.730612382014839),T:1129.0(57.84%),B:20926.8(45.12%),P:1e-28
|name=5-WCCGWTAR,CNhs13822,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.730612382014839),T:1129.0(57.84%),B:20926.8(45.12%),P:1e-28
|tomtom_result=GAT1#MA0300.1;-1;0.00266509;1.26858;1;7;TCCGTTAA;CCGATAAG;+!myb.Ph3#MA0054.1;2;0.00462844;2.20314;1;7;TCCGTTAA;AAACGGTTA;-!DAL80#MA0289.1;-2;0.00799771;3.80691;1;6;TCCGTTAA;CGATAAG;+!STP3#MA0396.1;0;0.0122345;5.8236;1;8;TCCGTTAA;TGCGCTAGC;-!ttx-3::ceh-10#MA0263.1;6;0.0134842;6.41846;1;8;TCCGTTAA;ATTGGCTTCGTTAA;+!GATA2#MA0036.1;-2;0.0153565;7.30968;1;5;TCCGTTAA;GGATA;+!Gamyb#MA0034.1;1;0.0163414;7.77852;1;8;TCCGTTAA;GGCGGTTGTC;-!SMP1#MA0383.1;2;0.017235;8.20386;1;8;TCCGTTAA;TTACCTATAATTAAATTAGCA;+!RME1#MA0370.1;1;0.0174186;8.29125;1;8;TCCGTTAA;TTCCTTTGGA;-!ovo#MA0126.1;0;0.0179762;8.55668;1;8;TCCGTTAA;ACTGTTACT;-!prd#MA0239.1;0;0.0179762;8.55668;1;8;TCCGTTAA;ACTGTTACT;-
}}
}}

Latest revision as of 14:34, 7 September 2012

Full Name: 5-WCCGWTAR,CNhs13822,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.730612382014839),T:1129.0(57.84%),B:20926.8(45.12%),P:1e-28

Motif matrix
POACGT
1414.3431.129248.38464.019
2141.125604.015177.253206.607
368.869860.298198.7041.129
493.7073.387974.32757.579
5401.924167.092126.448433.536
613.5481.1291.1291113.194
7732.721126.448162.576107.255
8494.502151.286349.99134.351

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GAT1#MA0300.1-10.002665091.2685817TCCGTTAACCGATAAG+
myb.Ph3#MA0054.120.004628442.2031417TCCGTTAAAAACGGTTA-
DAL80#MA0289.1-20.007997713.8069116TCCGTTAACGATAAG+
STP3#MA0396.100.01223455.823618TCCGTTAATGCGCTAGC-
ttx-3::ceh-10#MA0263.160.01348426.4184618TCCGTTAAATTGGCTTCGTTAA+
GATA2#MA0036.1-20.01535657.3096815TCCGTTAAGGATA+
Gamyb#MA0034.110.01634147.7785218TCCGTTAAGGCGGTTGTC-
SMP1#MA0383.120.0172358.2038618TCCGTTAATTACCTATAATTAAATTAGCA+
RME1#MA0370.110.01741868.2912518TCCGTTAATTCCTTTGGA-
ovo#MA0126.100.01797628.5566818TCCGTTAAACTGTTACT-
prd#MA0239.100.01797628.5566818TCCGTTAAACTGTTACT-
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