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MacroAPE 1083:MTE(core): Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=null |macroape_1083_sample_pvalues=11376-118A8;0.000957289!11327-117E4;0.949179!11473-119C6;0.908682!11474-119C7;0.547366!11475-119C8;0.985438!11476-119...")
 
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|PWM=null
|PWM=null
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8!12184-129A6;0.118497!10809-111A8;0.0537223!10597-108E3;0.604139!10717-109I6;0.234438!10455-106G5;0.501404!10534-107G3;0.0245621!10429-106D6;0.433792!10464-106H5;0.213884!10827-111C8;0.482957!10789-110H6;0.00874852!10828-111C9;0.00232322!10788-110H5;0.00275738!10792-110H9;0.0769286!10765-110E9;9.03647e-05!10829-111D1;0.0294701!10830-111D2;0.104796!10831-111D3;0.154039!10832-111D4;0.00374657!10833-111D5;0.0217626!10764-110E8;0.00926542!10770-110F5;0.387067!10399-106A3;0.0458844!10400-106A4;0.0104617!10405-106A9;0.0509067!10834-111D6;0.046301!10835-111D7;0.0508097!10836-111D8;0.0126016!10837-111D9;0.202551!10699-109G6;0.0189462!10802-111A1;0.0173949!10796-110I4;0.146287!10010-101C1;0.68124!10810-111A9;0.341236!10421-106C7;0.793776!10708-109H6;0.00445424!12235-129G3;0.245881!12236-129G4;0.517665!12237-129G5;0.887028!10167-103B5;0.541455!10151-102I7;0.1603!10428-106D5;0.0622209!10795-110I3;0.216782!10805-111A4;0.00728539!10052-101G7;0.22377!10189-103D9;0.0557999!10589-108D4;0.427261!10425-106D2;0.502275!10427-106D4;0.106405!10702-109G9;0.0474188!10432-106D9;0.78614!10496-107C1;0.097575!10718-109I7;0.541613!10011-101C2;0.0266557!10053-101G8;0.198627!10686-109F2;0.0601336!10084-102B3;0.00726331!10012-101C3;0.0664603!10085-102B4;0.123906!10482-107A5;0.0410563!10419-106C5;0.77917!10080-102A8;0.882728!10760-110E4;0.145592!10709-109H7;0.814033!10710-109H8;0.136395!10703-109H1;0.247172!10719-109I8;0.319799!10642-109A3;0.688043!10177-103C6;0.0812461!10164-103B2;0.0574051!10173-103C2;0.0672135!10166-103B4;0.303464!10083-102B2;0.0967323!10188-103D8;0.123066!10552-107I3;0.115334!10553-107I4;0.0188115!10013-101C4;0.698579!10536-107G5;0.245191!10618-108G6;0.5372!10423-106C9;0.978568!10785-110H2;0.668229!12238-129G6;0.400202!12239-129G7;0.728424!12240-129G8;0.989164!10416-106C2;0.608047!10801-110I9;0.0846628!10766-110F1;0.00653933!10824-111C5;0.0389365!10825-111C6;0.00472434!10826-111C7;0.00507222!10454-106G4;0.00594335!10409-106B4;0.00857382!10638-108I8;0.0242799!10636-108I6;0.866617!10513-107D9;0.478709!10420-106C6;0.471814!10082-102B1;0.827621!10014-101C5;0.047031!10070-101I7;0.315046!10452-106G2;0.229291!10453-106G3;0.250638!10449-106F8;0.133254!10042-101F6;0.166502!10069-101I6;0.0203696!10193-103E4;0.392692!10631-108I1;0.135195!10438-106E6;0.0865625!10488-107B2;0.779039!10196-103E7;0.454711!10071-101I8;0.149161!10071-101I8;0.139582!10041-101F5;0.0740545!10451-106G1;0.0471221!10450-106F9;0.367603!10604-108F1;0.987164!10605-108F2;0.0544676!10606-108F3;0.370604!10603-108E9;0.0462475!10497-107C2;0.127357!10448-106F7;0.792087!10643-109A4;0.497456!10426-106D3;0.798342!10431-106D8;0.828183!10197-103E8;0.986906!10443-106F2;0.681313!10815-111B5;0.825717!10816-111B6;0.000517033!10817-111B7;0.00218695!10015-101C6;0.00116496!10410-106B5;0.33918!10054-101G9;0.877669!10758-110E2;0.0561979!10711-109H9;0.109164!10040-101F4;0.829452!10470-106I2;0.11772!10415-106C1;0.765333!10198-103E9;0.662655!10614-108G2;0.261339!10612-108F9;0.964234!10549-107H9;0.505425!10615-108G3;0.887528!10487-107B1;0.601413!10433-106E1;0.132569!10688-109F4;0.754617!10444-106F3;0.65136!10444-106F3;0.233287!10485-107A8;0.23874!10413-106B8;0.530672!10175-103C4;0.343008!10161-103A8;0.0628547!12131-128D7;0.0226841!10624-108H3;0.777558!10712-109I1;0.0305132!10205-103F7;0.0107056!10206-103F8;0.29429!10207-103F9;0.0985169!10050-101G5;0.0659801!10051-101G6;0.499054!10016-101C7;0.959762!10046-101G1;0.429797!10778-110G4;0.109051!10633-108I3;0.57819!10818-111B8;0.203027!10819-111B9;0.195!10820-111C1;0.172505!10484-107A7;0.245213!10808-111A7;0.391451!10169-103B7;0.0184057!10153-102I9;0.197532!13425-144D5;0.0399478!13433-144E4;0.097749!13437-144E8;0.0677935!11904-125F5;0.0985677!11905-125F6;0.203097!10039-101F3;0.868282!10791-110H8;0.0997995!10017-101C8;0.957618!10045-101F9;0.598752!10509-107D5;0.0514128!10839-111E2;0.533915!10692-109F8;0.0045093!10079-102A7;0.322405!10078-102A6;0.949465!10721-110A1;0.940074!10569-108B2;0.484872!10570-108B3;0.507495!10571-108B4;0.538953!10647-109A8;0.471501!10752-110D5;0.203373!10782-110G8;0.0429234!10726-110A6;0.134121!10018-101C9;0.403942!10086-102B5;0.121928!10182-103D2;0.878866!10165-103B3;0.121325!10499-107C4;0.069582!10408-106B3;0.40388!10019-101D1;0.0221731!10068-101I5;0.309836!10075-102A3;0.124005!10077-102A5;0.30854!10727-110A7;0.864454!10775-110G1;0.0125668!10412-106B7;0.0353737!12231-129F8;0.90016!12232-129F9;0.53919!12233-129G1;0.546442!12234-129G2;0.972909!10414-106B9;0.623894!10170-103B8;0.509092!10183-103D3;0.269837!10150-102I6;0.18901!10174-103C3;0.107314!10155-103A2;0.0974408!10038-101F2;0.0489613!10838-111E1;0.0493726!10759-110E3;0.359259!10514-107E1;0.019377!10465-106H6;0.176232!10691-109F7;0.510299!10843-111E6;0.90898!10844-111E7;0.493476!11747-123G1;0.150194!11748-123G2;0.227934!11749-123G3;0.429435!11750-123G4;0.209563!11751-123G5;0.897249!11840-124H4;0.911845!11752-123G6;0.108249!11753-123G7;0.136233!11754-123G8;0.615657!11755-123G9;0.275191!11756-123H1;0.488699!11833-124G6;0.603632!11760-123H5;0.155754!11836-124G9;0.849117!11758-123H3;0.384709!11835-124G8;0.694398!11762-123H7;0.860933!11838-124H2;0.890811!11757-123H2;0.822744!11759-123H4;0.956917!11761-123H6;0.748831!11842-124H6;0.852607!11837-124H1;0.839677!10568-108B1;0.799874!13230-141I8;0.622229!13231-141I9;0.732436!10696-109G3;0.577428!10493-107B7;0.0206096!10494-107B8;0.169012!10850-111F4;0.477169!10851-111F5;0.549137!10852-111F6;0.18048!10853-111F7;0.915808!10854-111F8;0.348924!10855-111F9;0.364949!10856-111G1;0.388649!10847-111F1;0.368408!10846-111E9;0.146516!10848-111F2;0.473075!10845-111E8;0.935899!10857-111G2;0.156847!10858-111G3;0.496931!10156-103A3;0.791366!11901-125F2;0.101281!11902-125F3;0.0252809!11903-125F4;0.0595563!10689-109F5;0.0834217!10648-109A9;0.578169!10784-110H1;0.591484!10744-110C6;0.327826!10772-110F7;0.000689898!10474-106I6;0.203501!10600-108E6;0.00356377!10684-109E9;0.437391!12226-129F3;0.550203!12227-129F4;0.802054!10508-107D4;0.321366!10539-107G8;0.620173!10607-108F4;0.809728!10555-107I6;0.57436!10774-110F9;0.615013!10637-108I7;0.75709!10663-109C6;0.786159!10728-110A8;0.446745!10729-110A9;0.514353!10430-106D7;0.262381!10730-110B1;0.962639!10813-111B3;0.896816!10812-111B2;0.465468!10037-101F1;0.44845!10172-103C1;0.0909303!10163-103B1;0.288659!10076-102A4;0.078823!10073-102A1;0.129422!10036-101E9;0.077925!10195-103E6;0.100997!10277-104E7;0.102127!10434-106E2;0.0173343!10550-107I1;0.831562!10545-107H5;0.923259!10544-107H4;0.319312!10704-109H2;0.939022!10510-107D6;0.290207!10558-107I9;0.155387!10020-101D2;0.162314!10732-110B3;0.528617!10049-101G4;0.520892!10698-109G5;0.900106!10437-106E5;0.749398!10417-106C3;0.616557!10035-101E8;0.978959!10171-103B9;0.135139!10157-103A4;0.18156!10034-101E7;0.106861!10072-101I9;0.111035!10199-103F1;0.0931816!10200-103F2;0.374097!10697-109G4;0.513466!10723-110A3;0.711615!10179-103C8;0.202962!10160-103A7;0.618824!10180-103C9;0.530122!10162-103A9;0.737222!10021-101D3;0.435054!10840-111E3;0.940669!10706-109H4;0.0540146!10033-101E6;0.0651611!10032-101E5;0.122722!10490-107B4;0.121704!10439-106E7;0.739633!10022-101D4;0.177978!10176-103C5;0.0924305!10469-106I1;0.11554!10067-101I4;0.331201!10411-106B6;0.00271081!10471-106I3;0.261958!10030-101E3;0.892676!10475-106I7;0.0382358!10787-110H4;0.422851!10477-106I9;0.185761!10695-109G2;0.398587!11771-123I7;0.234709!11772-123I8;0.384541!11773-123I9;0.0358635!10093-102C3;0.00628161!10442-106F1;0.151226!10442-106F1;0.355529!10201-103F3;0.547286!10639-108I9;0.992415!11843-124H7;0.0628494!11841-124H5;0.511314!10693-109F9;0.296774!10436-106E4;0.212137!10483-107A6;0.890284!10282-104F3;0.539708!10023-101D5;0.427998!10066-101I3;0.332731!10065-101I2;0.299584!10800-110I8;0.31351!10610-108F7;0.268391!10841-111E4;0.0742635!10541-107H1;0.950205!10842-111E5;0.680785!10562-108A4;0.440529!10024-101D6;0.197498!10064-101I1;0.57171!10609-108F6;0.430354!10048-101G3;0.983326!10781-110G7;0.0834632!10181-103D1;0.549993!10159-103A6;0.0357127!10056-101H2;0.027925!10737-110B8;0.0280302!10025-101D7;0.101243!10044-101F8;0.989593!10424-106D1;0.43116!10463-106H4;0.013784!10616-108G4;0.798986!10486-107A9;0.666375!10062-101H8;0.228497!10202-103F4;0.00598482!10158-103A5;0.264824!10441-106E9;0.0166944!10031-101E4;0.151581!10063-101H9;0.0806724!10063-101H9;0.0530546!11763-123H8;0.435556!11765-123I1;0.859549!11768-123I4;0.79896!10807-111A6;0.918415!10790-110H7;0.060445!10798-110I6;0.0927294!10786-110H3;0.623468!10591-108D6;0.169456!10593-108D8;0.476926!10590-108D5;0.264476!10026-101D8;0.290443!10096-102C6;0.685623!10168-103B6;0.741284!10154-103A1;0.0794663!10209-103G2;0.0372694!10061-101H7;0.87415!10027-101D9;0.0955497!10043-101F7;0.143312!10783-110G9;0.658733!10028-101E1;0.00304138!10060-101H6;0.0340265!10203-103F5;0.0695967!10059-101H5;0.958012!10047-101G2;0.934171!10029-101E2;0.922704!10058-101H4;0.486831!10418-106C4;0.203635!10492-107B6;0.171646!10694-109G1;0.600534!10797-110I5;0.0354194!10057-101H3;0.636752!10100-102D1;0.407431!10055-101H1;0.0621676!10204-103F6;0.00425359!10191-103E2;0.0211143!10563-108A5;0.749194
|name=MTE{core}
|name=MTE{core
|tomtom_result=STP2#MA0395.1;1;0.000408596;0.194492;0.383451;19;CTTCGAGCGGAGCGGACGC;TCGTCGTGCGGCGCCGATCA;-!DOT6#MA0351.1;1;0.000805774;0.383548;0.383451;19;CTTCGAGCGGAGCGGACGC;TTCTGCACCTCATCGCATCCT;+!ARO80#MA0273.1;2;0.00194733;0.926927;0.617795;19;CTTCGAGCGGAGCGGACGC;ACATACTTGCCGAGAATTATC;-!NFYA#MA0060.1;-2;0.0027148;1.29224;0.645958;16;CTTCGAGCGGAGCGGACGC;CTCAGCCAATCAGCGC;+!Pax5#MA0014.1;5;0.00410249;1.95279;0.780917;15;CTTCGAGCGGAGCGGACGC;GGAGCACTGAAGCGTAACCG;+!TOD6#MA0350.1;1;0.00597871;2.84586;0.924159;19;CTTCGAGCGGAGCGGACGC;AGGCACAGCTCATCGCGTTTT;+!HAP3#MA0314.1;-1;0.00679701;3.23538;0.924159;15;CTTCGAGCGGAGCGGACGC;TCTGAACCAATCAGA;-!XBP1#MA0414.1;0;0.00984835;4.68781;0.999747;7;CTTCGAGCGGAGCGGACGC;CCTCGAG;-!OPI1#MA0349.1;-3;0.011232;5.34641;0.999747;7;CTTCGAGCGGAGCGGACGC;CGAACCG;+!TFAP2A#MA0003.1;-6;0.0141564;6.73843;0.999747;9;CTTCGAGCGGAGCGGACGC;GCCCGGGGG;+!abi4#MA0123.1;-4;0.0143068;6.81002;0.999747;10;CTTCGAGCGGAGCGGACGC;GGGGGCACCG;-!GAL4#MA0299.1;-4;0.0156636;7.45586;0.999747;15;CTTCGAGCGGAGCGGACGC;GAGTACTGTTCCCCG;-!RSC3#MA0374.1;-3;0.0197374;9.39501;0.999747;7;CTTCGAGCGGAGCGGACGC;CGCGCGG;+
}}
}}

Latest revision as of 14:38, 7 September 2012

Full Name: MTE{core

Motif matrix
null

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
STP2#MA0395.110.0004085960.1944920.38345119CTTCGAGCGGAGCGGACGCTCGTCGTGCGGCGCCGATCA-
DOT6#MA0351.110.0008057740.3835480.38345119CTTCGAGCGGAGCGGACGCTTCTGCACCTCATCGCATCCT+
ARO80#MA0273.120.001947330.9269270.61779519CTTCGAGCGGAGCGGACGCACATACTTGCCGAGAATTATC-
NFYA#MA0060.1-20.00271481.292240.64595816CTTCGAGCGGAGCGGACGCCTCAGCCAATCAGCGC+
Pax5#MA0014.150.004102491.952790.78091715CTTCGAGCGGAGCGGACGCGGAGCACTGAAGCGTAACCG+
TOD6#MA0350.110.005978712.845860.92415919CTTCGAGCGGAGCGGACGCAGGCACAGCTCATCGCGTTTT+
HAP3#MA0314.1-10.006797013.235380.92415915CTTCGAGCGGAGCGGACGCTCTGAACCAATCAGA-
XBP1#MA0414.100.009848354.687810.9997477CTTCGAGCGGAGCGGACGCCCTCGAG-
OPI1#MA0349.1-30.0112325.346410.9997477CTTCGAGCGGAGCGGACGCCGAACCG+
TFAP2A#MA0003.1-60.01415646.738430.9997479CTTCGAGCGGAGCGGACGCGCCCGGGGG+
abi4#MA0123.1-40.01430686.810020.99974710CTTCGAGCGGAGCGGACGCGGGGGCACCG-
GAL4#MA0299.1-40.01566367.455860.99974715CTTCGAGCGGAGCGGACGCGAGTACTGTTCCCCG-
RSC3#MA0374.1-30.01973749.395010.9997477CTTCGAGCGGAGCGGACGCCGCGCGG+
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