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MacroAPE 1083:14-RSCGSWVTCT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;316.096;27.456;340.736;19.712!2;13.376;305.536;342.848;42.24!3;25.344;591.36;47.168;40.128!4;38.72;40.128;605.44;19.712!5;21.12;304.832;332....")
 
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106D6;0.349626!10464-106H5;0.0807557!10827-111C8;0.237735!10789-110H6;0.780713!10828-111C9;0.276886!10788-110H5;0.807345!10792-110H9;0.603174!10765-110E9;0.345865!10829-111D1;0.754804!10830-111D2;0.685057!10831-111D3;0.916857!10832-111D4;0.783178!10833-111D5;0.791915!10764-110E8;0.806102!10770-110F5;0.871281!10399-106A3;0.46022!10400-106A4;0.948279!10405-106A9;0.825067!10834-111D6;0.911849!10835-111D7;0.612773!10836-111D8;0.435833!10837-111D9;0.305716!10699-109G6;0.840752!10802-111A1;0.479536!10796-110I4;0.997845!10010-101C1;0.713787!10810-111A9;0.425491!10421-106C7;0.031717!10708-109H6;0.955106!12235-129G3;0.629959!12236-129G4;0.731787!12237-129G5;0.630364!10167-103B5;0.879293!10151-102I7;0.336648!10428-106D5;0.358351!10795-110I3;0.0913802!10805-111A4;0.690728!10052-101G7;0.00210915!10189-103D9;0.7227!10589-108D4;0.627867!10425-106D2;0.743073!10427-106D4;0.0106882!10702-109G9;0.376498!10432-106D9;0.44502!10496-107C1;0.931566!10718-109I7;0.142895!10011-101C2;0.747148!10053-101G8;0.826747!10686-109F2;0.942031!10084-102B3;0.637954!10012-101C3;0.707302!10085-102B4;0.501461!10482-107A5;0.2032!10419-106C5;0.380201!10080-102A8;0.12372!10760-110E4;0.701572!10709-109H7;0.634002!10710-109H8;0.300975!10703-109H1;0.109991!10719-109I8;0.0233533!10642-109A3;0.0867156!10177-103C6;1.56688e-06!10164-103B2;0.510286!10173-103C2;0.390477!10166-103B4;0.12919!10083-102B2;0.169205!10188-103D8;0.352051!10552-107I3;0.620416!10553-107I4;0.946936!10013-101C4;0.567655!10536-107G5;0.726362!10618-108G6;0.25614!10423-106C9;0.137213!10785-110H2;0.208339!12238-129G6;0.129379!12239-129G7;0.285442!12240-129G8;0.502833!10416-106C2;0.0168678!10801-110I9;0.733473!10766-110F1;0.711305!10824-111C5;0.955701!10825-111C6;0.342961!10826-111C7;0.268586!10454-106G4;0.219098!10409-106B4;0.37489!10638-108I8;0.535234!10636-108I6;0.797478!10513-107D9;0.964977!10420-106C6;0.0998987!10082-102B1;0.00663446!10014-101C5;0.434065!10070-101I7;0.533958!10452-106G2;0.520237!10453-106G3;0.0203108!10449-106F8;0.0878646!10042-101F6;0.0759595!10069-101I6;0.658152!10193-103E4;0.485954!10631-108I1;0.646728!10438-106E6;0.870592!10488-107B2;0.241259!10196-103E7;0.638404!10071-101I8;0.681885!10071-101I8;0.511662!10041-101F5;0.182487!10451-106G1;0.668628!10450-106F9;0.150676!10604-108F1;0.0552793!10605-108F2;0.182231!10606-108F3;0.170601!10603-108E9;0.0547255!10497-107C2;0.0748907!10448-106F7;0.25032!10643-109A4;0.643959!10426-106D3;0.930685!10431-106D8;0.28144!10197-103E8;0.566829!10443-106F2;0.148801!10815-111B5;0.81423!10816-111B6;0.672705!10817-111B7;0.480433!10015-101C6;0.741867!10410-106B5;0.267615!10054-101G9;0.0030214!10758-110E2;0.599364!10711-109H9;0.343118!10040-101F4;0.995557!10470-106I2;0.351453!10415-106C1;0.560883!10198-103E9;0.241827!10614-108G2;0.35211!10612-108F9;0.273781!10549-107H9;0.481259!10615-108G3;0.00223783!10487-107B1;0.00624639!10433-106E1;0.949239!10688-109F4;0.0132809!10444-106F3;0.831603!10444-106F3;0.213364!10485-107A8;0.149327!10413-106B8;0.233514!10175-103C4;0.0196667!10161-103A8;0.681215!12131-128D7;0.478734!10624-108H3;0.369159!10712-109I1;0.520209!10205-103F7;0.851639!10206-103F8;0.823535!10207-103F9;0.893125!10050-101G5;0.446658!10051-101G6;0.15254!10016-101C7;0.387324!10046-101G1;0.759569!10778-110G4;0.703576!10633-108I3;0.8061!10818-111B8;0.0542209!10819-111B9;0.311138!10820-111C1;0.380061!10484-107A7;0.308721!10808-111A7;0.0834069!10169-103B7;0.83006!10153-102I9;0.426094!13425-144D5;0.418236!13433-144E4;0.171968!13437-144E8;0.0324316!11904-125F5;0.0652019!11905-125F6;0.469273!10039-101F3;0.67445!10791-110H8;0.398576!10017-101C8;0.883414!10045-101F9;0.486493!10509-107D5;0.945486!10839-111E2;0.00036464!10692-109F8;0.796167!10079-102A7;0.720722!10078-102A6;0.206282!10721-110A1;0.193619!10569-108B2;0.146961!10570-108B3;0.0253209!10571-108B4;0.0150307!10647-109A8;0.0527728!10752-110D5;0.151567!10782-110G8;0.584324!10726-110A6;0.281882!10018-101C9;0.338911!10086-102B5;0.143831!10182-103D2;0.0310979!10165-103B3;0.546357!10499-107C4;0.543562!10408-106B3;0.118719!10019-101D1;0.393964!10068-101I5;0.336868!10075-102A3;0.770185!10077-102A5;0.101569!10727-110A7;0.0707059!10775-110G1;0.532684!10412-106B7;0.457689!12231-129F8;0.0825508!12232-129F9;0.30562!12233-129G1;0.613598!12234-129G2;0.429381!10414-106B9;0.384223!10170-103B8;0.129721!10183-103D3;0.261914!10150-102I6;0.430522!10174-103C3;0.407731!10155-103A2;0.924201!10038-101F2;0.754223!10838-111E1;0.824878!10759-110E3;0.00138842!10514-107E1;0.238806!10465-106H6;0.464551!10691-109F7;0.600556!10843-111E6;0.440588!10844-111E7;0.0264345!11747-123G1;0.0496837!11748-123G2;0.246566!11749-123G3;0.412987!11750-123G4;0.0629752!11751-123G5;0.14899!11840-124H4;0.177679!11752-123G6;0.243035!11753-123G7;0.169905!11754-123G8;0.262862!11755-123G9;0.332191!11756-123H1;0.371968!11833-124G6;0.442507!11760-123H5;0.189647!11836-124G9;0.378004!11758-123H3;0.0918919!11835-124G8;0.14626!11762-123H7;0.209303!11838-124H2;0.170832!11757-123H2;0.120352!11759-123H4;0.140587!11761-123H6;0.270221!11842-124H6;0.0836067!11837-124H1;0.051671!10568-108B1;0.202516!13230-141I8;0.236773!13231-141I9;0.272325!10696-109G3;0.311476!10493-107B7;0.191466!10494-107B8;0.508209!10850-111F4;0.0101163!10851-111F5;0.769749!10852-111F6;0.971455!10853-111F7;0.504068!10854-111F8;0.995056!10855-111F9;0.93857!10856-111G1;0.779846!10847-111F1;0.0503237!10846-111E9;0.919218!10848-111F2;0.895932!10845-111E8;0.467258!10857-111G2;0.956051!10858-111G3;0.967828!10156-103A3;0.148356!11901-125F2;0.367616!11902-125F3;0.158216!11903-125F4;0.107346!10689-109F5;0.458589!10648-109A9;0.506352!10784-110H1;0.157711!10744-110C6;0.721574!10772-110F7;0.559093!10474-106I6;0.807284!10600-108E6;0.979589!10684-109E9;0.0364232!12226-129F3;0.957558!12227-129F4;0.126436!10508-107D4;0.259607!10539-107G8;5.63214e-05!10607-108F4;0.00423466!10555-107I6;0.0381456!10774-110F9;0.000969066!10637-108I7;0.304792!10663-109C6;0.000343502!10728-110A8;0.076617!10729-110A9;0.0272773!10430-106D7;0.797692!10730-110B1;0.0641534!10813-111B3;0.0611083!10812-111B2;0.356576!10037-101F1;0.160444!10172-103C1;0.452756!10163-103B1;0.238204!10076-102A4;0.381429!10073-102A1;0.491101!10036-101E9;0.12759!10195-103E6;0.393058!10277-104E7;0.462248!10434-106E2;0.359563!10550-107I1;0.283978!10545-107H5;0.292833!10544-107H4;0.613652!10704-109H2;0.379419!10510-107D6;0.968041!10558-107I9;0.0192444!10020-101D2;0.00789469!10732-110B3;0.660564!10049-101G4;0.518232!10698-109G5;0.183105!10437-106E5;0.159238!10417-106C3;0.242901!10035-101E8;0.683668!10171-103B9;0.373636!10157-103A4;0.423588!10034-101E7;0.36982!10072-101I9;0.372951!10199-103F1;0.171768!10200-103F2;0.0935945!10697-109G4;0.22691!10723-110A3;0.0217508!10179-103C8;0.812189!10160-103A7;0.18265!10180-103C9;0.0719083!10162-103A9;0.264845!10021-101D3;0.198224!10840-111E3;0.495038!10706-109H4;0.645943!10033-101E6;0.279306!10032-101E5;0.505103!10490-107B4;0.406265!10439-106E7;0.450616!10022-101D4;0.856407!10176-103C5;0.669756!10469-106I1;0.267493!10067-101I4;0.581464!10411-106B6;0.919981!10471-106I3;0.244393!10030-101E3;0.575665!10475-106I7;0.880043!10787-110H4;0.0042907!10477-106I9;0.090517!10695-109G2;0.0265613!11771-123I7;0.166384!11772-123I8;0.3287!11773-123I9;0.747691!10093-102C3;0.368495!10442-106F1;0.0157673!10442-106F1;0.930471!10201-103F3;0.903579!10639-108I9;0.795416!11843-124H7;0.832438!11841-124H5;0.17534!10693-109F9;0.225966!10436-106E4;0.274018!10483-107A6;0.906535!10282-104F3;0.717709!10023-101D5;0.758294!10066-101I3;0.884631!10065-101I2;0.20977!10800-110I8;0.267803!10610-108F7;0.0265395!10841-111E4;0.0235123!10541-107H1;0.0327291!10842-111E5;0.0511591!10562-108A4;0.000638927!10024-101D6;0.324166!10064-101I1;0.482631!10609-108F6;0.43593!10048-101G3;0.609535!10781-110G7;0.829284!10181-103D1;0.106844!10159-103A6;0.797187!10056-101H2;0.671625!10737-110B8;0.927887!10025-101D7;0.909625!10044-101F8;0.15678!10424-106D1;0.705055!10463-106H4;0.449396!10616-108G4;0.120039!10486-107A9;0.436563!10062-101H8;0.978349!10202-103F4;0.891997!10158-103A5;0.0518099!10441-106E9;0.611749!10031-101E4;0.037896!10063-101H9;0.480178!10063-101H9;0.118258!11763-123H8;0.324785!11765-123I1;0.392912!11768-123I4;0.291207!10807-111A6;0.171931!10790-110H7;0.00213866!10798-110I6;0.00534776!10786-110H3;0.0121898!10591-108D6;0.00657419!10593-108D8;0.0442494!10590-108D5;0.00635652!10026-101D8;0.0591773!10096-102C6;0.261508!10168-103B6;0.692287!10154-103A1;0.566352!10209-103G2;0.522912!10061-101H7;0.0849496!10027-101D9;0.289106!10043-101F7;0.341704!10783-110G9;0.308702!10028-101E1;0.16249!10060-101H6;0.741029!10203-103F5;0.852954!10059-101H5;0.0699159!10047-101G2;0.138166!10029-101E2;0.0605632!10058-101H4;0.15469!10418-106C4;0.282686!10492-107B6;0.190647!10694-109G1;0.200796!10797-110I5;0.531874!10057-101H3;0.352019!10100-102D1;0.302207!10055-101H1;0.938151!10204-103F6;0.776633!10191-103E2;0.621263!10563-108A5;0.222979
|name=14-RSCGSWVTCT,CNhs11047,BestGuess:TYY1_f2_HM09(0.585001225521592),T:704.0(25.58%),B:7676.3(17.31%),P:1e-27
|name=14-RSCGSWVTCT,CNhs11047,BestGuess:TYY1_f2_HM09(0.585001225521592),T:704.0(25.58%),B:7676.3(17.31%),P:1e-27
|tomtom_result=CTCF#MA0139.1;1;0.00430628;2.04979;1;10;GGCGGAGTCT;TAGCGCCCCCTGGTGGCCA;-!DAL82#MA0291.1;-1;0.00723155;3.44222;1;9;GGCGGAGTCT;GCGCACATT;-!HAP5#MA0316.1;-2;0.00798367;3.80023;1;8;GGCGGAGTCT;TGGGATCTGATTGGT;+!LEU3#MA0324.1;-1;0.0125415;5.96975;1;9;GGCGGAGTCT;CCGGTAACGG;-!HAP4#MA0315.1;-2;0.0131889;6.27791;1;8;GGCGGAGTCT;TCGCCTCTGATTGGT;-!ARO80#MA0273.1;-1;0.0138346;6.58526;1;9;GGCGGAGTCT;GATAATTCTCGGCAAGTATGT;+!ARG80#MA0271.1;-4;0.0140584;6.69179;1;6;GGCGGAGTCT;GCGTCT;-!abi4#MA0123.1;1;0.0197549;9.40334;1;9;GGCGGAGTCT;CGGTGCCCCC;+!Trl#MA0205.1;-1;0.0197549;9.40334;1;9;GGCGGAGTCT;TTGCTCTCTC;+
}}
}}

Latest revision as of 14:42, 7 September 2012

Full Name: 14-RSCGSWVTCT,CNhs11047,BestGuess:TYY1_f2_HM09(0.585001225521592),T:704.0(25.58%),B:7676.3(17.31%),P:1e-27

Motif matrix
POACGT
1316.09627.456340.73619.712
213.376305.536342.84842.24
325.344591.3647.16840.128
438.7240.128605.4419.712
521.12304.832332.28846.464
6278.784139.392103.488182.336
7168.96190.08247.80897.856
835.236.60848.576583.616
934.496574.46443.64851.392
1023.23229.56819.008632.192

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CTCF#MA0139.110.004306282.04979110GGCGGAGTCTTAGCGCCCCCTGGTGGCCA-
DAL82#MA0291.1-10.007231553.4422219GGCGGAGTCTGCGCACATT-
HAP5#MA0316.1-20.007983673.8002318GGCGGAGTCTTGGGATCTGATTGGT+
LEU3#MA0324.1-10.01254155.9697519GGCGGAGTCTCCGGTAACGG-
HAP4#MA0315.1-20.01318896.2779118GGCGGAGTCTTCGCCTCTGATTGGT-
ARO80#MA0273.1-10.01383466.5852619GGCGGAGTCTGATAATTCTCGGCAAGTATGT+
ARG80#MA0271.1-40.01405846.6917916GGCGGAGTCTGCGTCT-
abi4#MA0123.110.01975499.4033419GGCGGAGTCTCGGTGCCCCC+
Trl#MA0205.1-10.01975499.4033419GGCGGAGTCTTTGCTCTCTC+
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