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MacroAPE 1083:4-GCAAATCGGA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;45.318;40.404;391.482;68.796!2;56.238;387.114;49.686;52.962!3;392.028;55.146;43.68;55.146!4;398.034;44.772;59.514;43.68!5;370.188;49.14;59.5...")
 
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G5;0.0140259!10534-107G3;0.624323!10429-106D6;0.496874!10464-106H5;0.71542!10827-111C8;0.947789!10789-110H6;0.837732!10828-111C9;0.553498!10788-110H5;0.731139!10792-110H9;0.781385!10765-110E9;0.151463!10829-111D1;0.371473!10830-111D2;0.883511!10831-111D3;0.261663!10832-111D4;0.549101!10833-111D5;0.964974!10764-110E8;0.953762!10770-110F5;0.784701!10399-106A3;0.571154!10400-106A4;0.778683!10405-106A9;0.668777!10834-111D6;0.744703!10835-111D7;0.736148!10836-111D8;0.747386!10837-111D9;0.416655!10699-109G6;0.801222!10802-111A1;0.998448!10796-110I4;0.873473!10010-101C1;0.27822!10810-111A9;0.355235!10421-106C7;0.246568!10708-109H6;0.521688!12235-129G3;0.221577!12236-129G4;0.685975!12237-129G5;0.829363!10167-103B5;0.411716!10151-102I7;0.758775!10428-106D5;0.708181!10795-110I3;0.0738846!10805-111A4;0.427124!10052-101G7;0.34312!10189-103D9;0.60543!10589-108D4;0.966183!10425-106D2;0.15997!10427-106D4;0.0174288!10702-109G9;0.523031!10432-106D9;0.837088!10496-107C1;0.0604295!10718-109I7;0.0647377!10011-101C2;0.995064!10053-101G8;0.855311!10686-109F2;0.00171716!10084-102B3;0.00202447!10012-101C3;0.662709!10085-102B4;0.754759!10482-107A5;0.725899!10419-106C5;0.164321!10080-102A8;0.057269!10760-110E4;0.893735!10709-109H7;0.321673!10710-109H8;0.259144!10703-109H1;0.358951!10719-109I8;0.000683299!10642-109A3;0.01062!10177-103C6;0.00133698!10164-103B2;0.912554!10173-103C2;0.838472!10166-103B4;0.674321!10083-102B2;0.785741!10188-103D8;0.60691!10552-107I3;0.828021!10553-107I4;0.506891!10013-101C4;0.0825972!10536-107G5;0.689643!10618-108G6;0.238725!10423-106C9;0.0979123!10785-110H2;0.298516!12238-129G6;0.402313!12239-129G7;0.712676!12240-129G8;0.674005!10416-106C2;0.290252!10801-110I9;0.616167!10766-110F1;0.882873!10824-111C5;0.565121!10825-111C6;0.691583!10826-111C7;0.732128!10454-106G4;0.702898!10409-106B4;0.897444!10638-108I8;0.964956!10636-108I6;0.281646!10513-107D9;0.0141816!10420-106C6;0.00478461!10082-102B1;0.0658204!10014-101C5;0.986297!10070-101I7;0.92385!10452-106G2;0.873746!10453-106G3;0.143048!10449-106F8;0.0830006!10042-101F6;0.0938833!10069-101I6;0.614626!10193-103E4;0.422881!10631-108I1;0.711132!10438-106E6;0.718582!10488-107B2;0.0800535!10196-103E7;0.719019!10071-101I8;0.504586!10071-101I8;0.619144!10041-101F5;0.7608!10451-106G1;0.753739!10450-106F9;0.038305!10604-108F1;0.0119777!10605-108F2;0.0936395!10606-108F3;0.636381!10603-108E9;0.20109!10497-107C2;0.19624!10448-106F7;0.28961!10643-109A4;0.717124!10426-106D3;0.140497!10431-106D8;0.445037!10197-103E8;0.0213397!10443-106F2;0.525949!10815-111B5;0.0908598!10816-111B6;0.585278!10817-111B7;0.401896!10015-101C6;0.644429!10410-106B5;0.741032!10054-101G9;0.864332!10758-110E2;0.96103!10711-109H9;0.531944!10040-101F4;0.113172!10470-106I2;0.829466!10415-106C1;0.11904!10198-103E9;0.191687!10614-108G2;0.938283!10612-108F9;0.190556!10549-107H9;0.442483!10615-108G3;0.00762857!10487-107B1;0.0529532!10433-106E1;0.637819!10688-109F4;0.795877!10444-106F3;0.463467!10444-106F3;0.0289364!10485-107A8;0.00859304!10413-106B8;0.00183412!10175-103C4;0.543594!10161-103A8;0.774429!12131-128D7;0.573132!10624-108H3;0.708664!10712-109I1;0.0357616!10205-103F7;0.986258!10206-103F8;0.632985!10207-103F9;0.332048!10050-101G5;0.303152!10051-101G6;0.940918!10016-101C7;0.145583!10046-101G1;0.40055!10778-110G4;0.789259!10633-108I3;0.578166!10818-111B8;0.000915429!10819-111B9;0.179232!10820-111C1;0.204693!10484-107A7;0.125096!10808-111A7;0.186645!10169-103B7;0.69427!10153-102I9;0.603016!13425-144D5;0.675501!13433-144E4;0.0597712!13437-144E8;0.0993232!11904-125F5;0.172855!11905-125F6;0.480745!10039-101F3;0.389473!10791-110H8;0.796617!10017-101C8;0.912023!10045-101F9;0.474096!10509-107D5;0.591404!10839-111E2;0.628657!10692-109F8;0.911133!10079-102A7;0.0384996!10078-102A6;0.446761!10721-110A1;0.123521!10569-108B2;0.56084!10570-108B3;0.740245!10571-108B4;0.931384!10647-109A8;0.471194!10752-110D5;0.00936063!10782-110G8;0.935122!10726-110A6;0.895985!10018-101C9;0.170238!10086-102B5;0.276206!10182-103D2;0.82851!10165-103B3;0.747752!10499-107C4;0.693123!10408-106B3;0.367888!10019-101D1;0.225474!10068-101I5;0.648811!10075-102A3;0.719136!10077-102A5;0.214221!10727-110A7;0.0293369!10775-110G1;0.908008!10412-106B7;0.533586!12231-129F8;0.220665!12232-129F9;0.631406!12233-129G1;0.510815!12234-129G2;0.455419!10414-106B9;0.602273!10170-103B8;0.0120231!10183-103D3;0.719891!10150-102I6;0.707124!10174-103C3;0.728418!10155-103A2;0.720801!10038-101F2;0.762561!10838-111E1;0.813789!10759-110E3;0.0846891!10514-107E1;0.129413!10465-106H6;0.706009!10691-109F7;0.967148!10843-111E6;0.663513!10844-111E7;0.028585!11747-123G1;0.0246478!11748-123G2;0.550705!11749-123G3;0.732976!11750-123G4;0.842813!11751-123G5;0.35965!11840-124H4;0.23118!11752-123G6;0.258387!11753-123G7;0.691752!11754-123G8;0.53852!11755-123G9;0.419551!11756-123H1;0.130711!11833-124G6;0.47351!11760-123H5;0.750352!11836-124G9;0.694816!11758-123H3;0.99836!11835-124G8;0.641736!11762-123H7;0.570958!11838-124H2;0.195826!11757-123H2;0.660903!11759-123H4;0.343047!11761-123H6;0.615152!11842-124H6;0.875758!11837-124H1;0.809809!10568-108B1;0.430307!13230-141I8;0.0343307!13231-141I9;0.765557!10696-109G3;0.840076!10493-107B7;0.260101!10494-107B8;0.46319!10850-111F4;0.153839!10851-111F5;0.797338!10852-111F6;0.0580031!10853-111F7;0.105054!10854-111F8;0.455562!10855-111F9;0.0488744!10856-111G1;0.515968!10847-111F1;0.485076!10846-111E9;0.00446392!10848-111F2;0.337773!10845-111E8;0.108191!10857-111G2;0.149728!10858-111G3;0.329375!10156-103A3;0.0595877!11901-125F2;0.666574!11902-125F3;0.926421!11903-125F4;0.692811!10689-109F5;0.635063!10648-109A9;0.129513!10784-110H1;0.0310642!10744-110C6;0.703543!10772-110F7;0.94425!10474-106I6;0.443545!10600-108E6;0.513557!10684-109E9;0.00120058!12226-129F3;0.353634!12227-129F4;0.66504!10508-107D4;0.686249!10539-107G8;0.0266942!10607-108F4;0.00283786!10555-107I6;0.174817!10774-110F9;0.0283701!10637-108I7;0.40396!10663-109C6;0.237682!10728-110A8;0.334459!10729-110A9;0.297803!10430-106D7;0.878741!10730-110B1;0.381006!10813-111B3;0.170076!10812-111B2;0.222043!10037-101F1;0.436286!10172-103C1;0.89139!10163-103B1;0.831682!10076-102A4;0.713633!10073-102A1;0.676328!10036-101E9;0.770143!10195-103E6;0.746833!10277-104E7;0.728582!10434-106E2;0.363425!10550-107I1;0.364834!10545-107H5;0.238594!10544-107H4;0.799814!10704-109H2;0.6943!10510-107D6;0.225406!10558-107I9;0.0120951!10020-101D2;0.439468!10732-110B3;0.577257!10049-101G4;0.0963163!10698-109G5;0.364639!10437-106E5;0.533909!10417-106C3;0.575025!10035-101E8;0.443102!10171-103B9;0.771727!10157-103A4;0.707928!10034-101E7;0.713596!10072-101I9;0.785912!10199-103F1;0.742857!10200-103F2;0.417035!10697-109G4;0.288439!10723-110A3;0.25889!10179-103C8;0.403417!10160-103A7;0.902427!10180-103C9;0.876548!10162-103A9;0.704823!10021-101D3;0.904243!10840-111E3;0.783345!10706-109H4;0.440151!10033-101E6;0.318247!10032-101E5;0.774894!10490-107B4;0.720702!10439-106E7;0.143784!10022-101D4;0.0125664!10176-103C5;0.906998!10469-106I1;0.923066!10067-101I4;0.0778557!10411-106B6;0.665056!10471-106I3;0.0884169!10030-101E3;0.783371!10475-106I7;0.838568!10787-110H4;0.0582758!10477-106I9;0.883783!10695-109G2;0.161445!11771-123I7;0.887972!11772-123I8;0.629086!11773-123I9;0.390538!10093-102C3;0.656154!10442-106F1;0.517757!10442-106F1;0.534296!10201-103F3;0.372543!10639-108I9;0.570471!11843-124H7;0.0851307!11841-124H5;0.800834!10693-109F9;0.119109!10436-106E4;0.303808!10483-107A6;0.416356!10282-104F3;0.538714!10023-101D5;0.00259464!10066-101I3;0.0299021!10065-101I2;0.31742!10800-110I8;0.951606!10610-108F7;0.053012!10841-111E4;0.0426055!10541-107H1;0.137839!10842-111E5;0.0354721!10562-108A4;0.0202472!10024-101D6;0.035583!10064-101I1;0.826352!10609-108F6;0.877714!10048-101G3;0.129859!10781-110G7;0.371254!10181-103D1;0.115246!10159-103A6;0.849806!10056-101H2;0.686521!10737-110B8;0.886521!10025-101D7;0.635184!10044-101F8;0.651038!10424-106D1;0.803485!10463-106H4;0.479066!10616-108G4;0.337865!10486-107A9;0.886875!10062-101H8;0.540337!10202-103F4;0.978199!10158-103A5;0.396673!10441-106E9;0.447706!10031-101E4;0.00222184!10063-101H9;0.752816!10063-101H9;0.852918!11763-123H8;0.635137!11765-123I1;0.890643!11768-123I4;0.609831!10807-111A6;0.877719!10790-110H7;0.0103846!10798-110I6;0.0319002!10786-110H3;0.0513728!10591-108D6;0.131357!10593-108D8;0.214027!10590-108D5;0.189031!10026-101D8;0.169532!10096-102C6;0.906773!10168-103B6;0.375125!10154-103A1;0.678953!10209-103G2;0.742855!10061-101H7;0.478169!10027-101D9;0.81822!10043-101F7;0.998948!10783-110G9;0.373283!10028-101E1;0.339978!10060-101H6;0.14795!10203-103F5;0.566427!10059-101H5;0.277704!10047-101G2;0.325621!10029-101E2;0.912379!10058-101H4;0.832446!10418-106C4;0.925162!10492-107B6;0.0271102!10694-109G1;0.101298!10797-110I5;0.00511864!10057-101H3;0.4548!10100-102D1;0.968475!10055-101H1;0.630101!10204-103F6;0.750063!10191-103E2;0.785345!10563-108A5;0.553014
|name=4-GCAAATCGGA,CNhs11045,BestGuess:NFY{A,B,C}.p2.SwissRegulon.nucfreq(0.684584926991251),T:546.0(31.02%),B:8708.7(18.96%),P:1e-33
|name=4-GCAAATCGGA,CNhs11045,BestGuess:NFY{A,B,C}.p2.SwissRegulon.nucfreq(0.684584926991251),T:546.0(31.02%),B:8708.7(18.96%),P:1e-33
|tomtom_result=NFYA#MA0060.1;4;0.00393714;1.87408;1;10;GCAAATCGGA;CTCAGCCAATCAGCGC;+!nub#MA0453.1;3;0.00452342;2.15315;1;9;GCAAATCGGA;TATGCAAATTAG;+!HAP3#MA0314.1;5;0.00819711;3.90182;1;10;GCAAATCGGA;TCTGAACCAATCAGA;-!br_Z2#MA0011.1;-2;0.0105449;5.01936;1;8;GCAAATCGGA;AAATAGTA;-!Gfi#MA0038.1;-1;0.0109529;5.2136;1;9;GCAAATCGGA;CAAATCACTG;+!HAP5#MA0316.1;0;0.0140419;6.68397;1;10;GCAAATCGGA;ACCAATCAGATCCCA;-!YPR013C#MA0434.1;1;0.0157539;7.49887;1;8;GCAAATCGGA;TGTAGATCA;+!ARR10#MA0121.1;0;0.0206921;9.84943;1;8;GCAAATCGGA;GCGGATCT;-
}}
}}

Latest revision as of 14:43, 7 September 2012

Full Name: 4-GCAAATCGGA,CNhs11045,BestGuess:NFY{A,B,C}.p2.SwissRegulon.nucfreq(0.684584926991251),T:546.0(31.02%),B:8708.7(18.96%),P:1e-33

Motif matrix
POACGT
145.31840.404391.48268.796
256.238387.11449.68652.962
3392.02855.14643.6855.146
4398.03444.77259.51443.68
5370.18849.1459.51467.158
654.05456.23850.232385.476
758.968382.252.41652.416
852.41672.072375.64845.864
960.60663.882368.5552.962
10371.82656.23855.14662.79

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFYA#MA0060.140.003937141.87408110GCAAATCGGACTCAGCCAATCAGCGC+
nub#MA0453.130.004523422.1531519GCAAATCGGATATGCAAATTAG+
HAP3#MA0314.150.008197113.90182110GCAAATCGGATCTGAACCAATCAGA-
br_Z2#MA0011.1-20.01054495.0193618GCAAATCGGAAAATAGTA-
Gfi#MA0038.1-10.01095295.213619GCAAATCGGACAAATCACTG+
HAP5#MA0316.100.01404196.68397110GCAAATCGGAACCAATCAGATCCCA-
YPR013C#MA0434.110.01575397.4988718GCAAATCGGATGTAGATCA+
ARR10#MA0121.100.02069219.8494318GCAAATCGGAGCGGATCT-
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