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MacroAPE 1083:5-TCTGCGTCAC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;135.327;36.544;21.698;377.431!2;85.079;374.005;105.064;6.852!3;222.69;5.139;6.852;336.319!4;58.242;54.816;387.138;70.804!5;146.176;394.561;1...")
 
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27!12183-129A5;0.265433!12184-129A6;0.0888407!10809-111A8;0.344834!10597-108E3;0.452562!10717-109I6;0.555466!10455-106G5;0.910045!10534-107G3;0.502334!10429-106D6;0.714187!10464-106H5;0.992091!10827-111C8;0.687394!10789-110H6;0.266796!10828-111C9;0.309415!10788-110H5;0.333619!10792-110H9;0.243332!10765-110E9;0.227647!10829-111D1;0.444994!10830-111D2;0.85937!10831-111D3;0.172421!10832-111D4;0.248109!10833-111D5;0.683991!10764-110E8;0.462756!10770-110F5;0.252937!10399-106A3;0.714699!10400-106A4;0.587599!10405-106A9;0.678927!10834-111D6;0.85652!10835-111D7;0.549491!10836-111D8;0.974025!10837-111D9;0.558557!10699-109G6;0.515607!10802-111A1;0.483307!10796-110I4;0.417941!10010-101C1;0.864606!10810-111A9;0.607266!10421-106C7;0.344884!10708-109H6;0.491633!12235-129G3;0.811086!12236-129G4;0.0754072!12237-129G5;0.344209!10167-103B5;0.017801!10151-102I7;0.35394!10428-106D5;0.637289!10795-110I3;0.00784518!10805-111A4;0.883216!10052-101G7;0.870115!10189-103D9;0.74257!10589-108D4;0.211728!10425-106D2;0.189811!10427-106D4;0.494006!10702-109G9;0.849866!10432-106D9;0.809906!10496-107C1;0.877012!10718-109I7;0.298902!10011-101C2;0.70633!10053-101G8;0.726791!10686-109F2;0.00836001!10084-102B3;0.540845!10012-101C3;0.731198!10085-102B4;0.500756!10482-107A5;0.963507!10419-106C5;0.67663!10080-102A8;0.89394!10760-110E4;0.269779!10709-109H7;0.839602!10710-109H8;0.787635!10703-109H1;0.78765!10719-109I8;0.97277!10642-109A3;0.88139!10177-103C6;0.360753!10164-103B2;0.521925!10173-103C2;0.595079!10166-103B4;0.560462!10083-102B2;0.667916!10188-103D8;0.582798!10552-107I3;0.432091!10553-107I4;0.912533!10013-101C4;0.139759!10536-107G5;0.59407!10618-108G6;0.0220323!10423-106C9;0.49035!10785-110H2;0.71231!12238-129G6;0.680519!12239-129G7;0.644149!12240-129G8;0.116642!10416-106C2;0.864352!10801-110I9;0.85939!10766-110F1;0.694059!10824-111C5;0.598472!10825-111C6;0.376582!10826-111C7;0.380814!10454-106G4;0.38049!10409-106B4;0.305061!10638-108I8;0.493642!10636-108I6;0.372734!10513-107D9;0.407831!10420-106C6;0.259011!10082-102B1;0.354208!10014-101C5;0.0287842!10070-101I7;0.120982!10452-106G2;0.206033!10453-106G3;0.328878!10449-106F8;0.818621!10042-101F6;0.941321!10069-101I6;0.801693!10193-103E4;0.482662!10631-108I1;0.639482!10438-106E6;0.878517!10488-107B2;0.667043!10196-103E7;0.84888!10071-101I8;0.288977!10071-101I8;0.237122!10041-101F5;0.928933!10451-106G1;0.626067!10450-106F9;0.475204!10604-108F1;0.0589982!10605-108F2;0.615896!10606-108F3;0.780819!10603-108E9;0.714427!10497-107C2;0.91359!10448-106F7;0.277277!10643-109A4;0.364863!10426-106D3;0.670605!10431-106D8;0.146955!10197-103E8;0.591545!10443-106F2;0.287576!10815-111B5;0.164353!10816-111B6;0.911824!10817-111B7;0.85001!10015-101C6;0.821731!10410-106B5;0.82978!10054-101G9;0.955532!10758-110E2;0.767668!10711-109H9;0.540461!10040-101F4;0.982317!10470-106I2;0.544401!10415-106C1;0.818019!10198-103E9;0.277517!10614-108G2;0.570516!10612-108F9;0.538074!10549-107H9;0.710554!10615-108G3;0.354179!10487-107B1;0.252966!10433-106E1;0.476696!10688-109F4;0.70135!10444-106F3;0.0453864!10444-106F3;0.282869!10485-107A8;0.416201!10413-106B8;0.104651!10175-103C4;0.172799!10161-103A8;0.612017!12131-128D7;0.970194!10624-108H3;0.812629!10712-109I1;0.271926!10205-103F7;0.319072!10206-103F8;0.938573!10207-103F9;0.407477!10050-101G5;0.417812!10051-101G6;0.310342!10016-101C7;0.477409!10046-101G1;0.370552!10778-110G4;0.20571!10633-108I3;0.144497!10818-111B8;0.165221!10819-111B9;0.0797549!10820-111C1;0.0930709!10484-107A7;0.0612608!10808-111A7;0.197362!10169-103B7;0.880863!10153-102I9;0.556389!13425-144D5;0.820609!13433-144E4;0.471382!13437-144E8;0.605291!11904-125F5;0.683656!11905-125F6;0.000307892!10039-101F3;4.11457e-05!10791-110H8;0.583903!10017-101C8;0.174558!10045-101F9;0.00120017!10509-107D5;0.010505!10839-111E2;0.813201!10692-109F8;0.217966!10079-102A7;0.609576!10078-102A6;0.394146!10721-110A1;0.36465!10569-108B2;0.418893!10570-108B3;0.913902!10571-108B4;0.620132!10647-109A8;0.51594!10752-110D5;0.254135!10782-110G8;0.54236!10726-110A6;0.201876!10018-101C9;0.151362!10086-102B5;0.0012319!10182-103D2;0.00856455!10165-103B3;0.455222!10499-107C4;0.646989!10408-106B3;0.527773!10019-101D1;0.571692!10068-101I5;0.615266!10075-102A3;0.351517!10077-102A5;0.554959!10727-110A7;0.326625!10775-110G1;0.707483!10412-106B7;0.285864!12231-129F8;0.194037!12232-129F9;0.453941!12233-129G1;0.54934!12234-129G2;0.553968!10414-106B9;0.279342!10170-103B8;0.809456!10183-103D3;0.239221!10150-102I6;0.356024!10174-103C3;0.554878!10155-103A2;0.980403!10038-101F2;0.879147!10838-111E1;0.928427!10759-110E3;0.245809!10514-107E1;0.75089!10465-106H6;0.706087!10691-109F7;0.560187!10843-111E6;0.499931!10844-111E7;0.673383!11747-123G1;0.3807!11748-123G2;0.931025!11749-123G3;0.85268!11750-123G4;0.863552!11751-123G5;0.660911!11840-124H4;0.168151!11752-123G6;0.454992!11753-123G7;0.513579!11754-123G8;0.871137!11755-123G9;0.644648!11756-123H1;0.646238!11833-124G6;0.348607!11760-123H5;0.948724!11836-124G9;0.254905!11758-123H3;0.92814!11835-124G8;0.652819!11762-123H7;0.472026!11838-124H2;0.5735!11757-123H2;0.131665!11759-123H4;0.694358!11761-123H6;0.276989!11842-124H6;0.924899!11837-124H1;0.558147!10568-108B1;0.25645!13230-141I8;0.979432!13231-141I9;0.409208!10696-109G3;0.311364!10493-107B7;0.874906!10494-107B8;0.838756!10850-111F4;0.108887!10851-111F5;0.398684!10852-111F6;0.180749!10853-111F7;0.166236!10854-111F8;0.302059!10855-111F9;0.343409!10856-111G1;0.86946!10847-111F1;0.232745!10846-111E9;0.0162833!10848-111F2;0.398!10845-111E8;0.569722!10857-111G2;0.328567!10858-111G3;0.779066!10156-103A3;0.455474!11901-125F2;0.602476!11902-125F3;0.0627896!11903-125F4;0.0257074!10689-109F5;0.211108!10648-109A9;0.0968081!10784-110H1;0.424544!10744-110C6;0.383518!10772-110F7;0.156031!10474-106I6;0.5198!10600-108E6;0.533966!10684-109E9;0.731712!12226-129F3;0.98765!12227-129F4;0.0258014!10508-107D4;0.487591!10539-107G8;0.333225!10607-108F4;0.345775!10555-107I6;0.294935!10774-110F9;0.796595!10637-108I7;0.369121!10663-109C6;0.805319!10728-110A8;0.83016!10729-110A9;0.715033!10430-106D7;0.171673!10730-110B1;0.737628!10813-111B3;0.519119!10812-111B2;0.743243!10037-101F1;0.55265!10172-103C1;0.602875!10163-103B1;0.318342!10076-102A4;0.637824!10073-102A1;0.456398!10036-101E9;0.973151!10195-103E6;0.409222!10277-104E7;0.560679!10434-106E2;0.839667!10550-107I1;0.749553!10545-107H5;0.777555!10544-107H4;0.351353!10704-109H2;0.381699!10510-107D6;0.08789!10558-107I9;0.582011!10020-101D2;0.526109!10732-110B3;0.338137!10049-101G4;0.806756!10698-109G5;0.544678!10437-106E5;0.604625!10417-106C3;0.30021!10035-101E8;0.636916!10171-103B9;0.470064!10157-103A4;0.365212!10034-101E7;0.506602!10072-101I9;0.514296!10199-103F1;0.917959!10200-103F2;0.319343!10697-109G4;0.942127!10723-110A3;0.540093!10179-103C8;0.28108!10160-103A7;0.720853!10180-103C9;0.807831!10162-103A9;0.196797!10021-101D3;0.687511!10840-111E3;0.171214!10706-109H4;0.972567!10033-101E6;0.0863566!10032-101E5;0.610091!10490-107B4;0.482878!10439-106E7;0.908208!10022-101D4;0.230781!10176-103C5;0.297654!10469-106I1;0.330394!10067-101I4;0.84918!10411-106B6;0.0983937!10471-106I3;0.230244!10030-101E3;0.427971!10475-106I7;0.294922!10787-110H4;0.298232!10477-106I9;0.207685!10695-109G2;0.00999828!11771-123I7;0.742681!11772-123I8;0.0696806!11773-123I9;0.0152946!10093-102C3;0.0586376!10442-106F1;0.0790508!10442-106F1;0.316714!10201-103F3;0.671274!10639-108I9;0.51892!11843-124H7;0.621243!11841-124H5;0.860625!10693-109F9;0.644013!10436-106E4;0.864774!10483-107A6;0.591892!10282-104F3;0.825449!10023-101D5;0.967095!10066-101I3;0.8844!10065-101I2;0.257082!10800-110I8;0.65133!10610-108F7;0.693091!10841-111E4;0.456654!10541-107H1;0.697925!10842-111E5;0.71841!10562-108A4;0.977591!10024-101D6;0.259572!10064-101I1;0.203843!10609-108F6;0.0393976!10048-101G3;0.719597!10781-110G7;0.543475!10181-103D1;0.574127!10159-103A6;0.983879!10056-101H2;0.900707!10737-110B8;0.76282!10025-101D7;0.300181!10044-101F8;0.0552646!10424-106D1;0.0421575!10463-106H4;0.67246!10616-108G4;0.398966!10486-107A9;0.160427!10062-101H8;0.487151!10202-103F4;0.345052!10158-103A5;0.124964!10441-106E9;0.848726!10031-101E4;0.0461293!10063-101H9;0.568674!10063-101H9;0.994386!11763-123H8;0.327271!11765-123I1;0.387837!11768-123I4;0.611941!10807-111A6;0.397804!10790-110H7;0.10696!10798-110I6;0.18102!10786-110H3;0.00978884!10591-108D6;0.65959!10593-108D8;0.865758!10590-108D5;0.446607!10026-101D8;0.716708!10096-102C6;0.200014!10168-103B6;0.410421!10154-103A1;0.707275!10209-103G2;0.936187!10061-101H7;0.997393!10027-101D9;0.413897!10043-101F7;0.700746!10783-110G9;0.68305!10028-101E1;0.0324325!10060-101H6;0.407994!10203-103F5;0.521435!10059-101H5;0.619746!10047-101G2;0.973633!10029-101E2;0.911675!10058-101H4;0.527739!10418-106C4;0.568839!10492-107B6;0.698803!10694-109G1;0.690781!10797-110I5;0.724647!10057-101H3;0.998154!10100-102D1;0.261686!10055-101H1;0.287215!10204-103F6;0.124611!10191-103E2;0.590432!10563-108A5;0.660738
|name=5-TCTGCGTCAC,CNhs13223,BestGuess:CREB1.p2.SwissRegulon.nucfreq(0.738713041987632),T:571.0(22.94%),B:5615.5(12.67%),P:1e-44
|name=5-TCTGCGTCAC,CNhs13223,BestGuess:CREB1.p2.SwissRegulon.nucfreq(0.738713041987632),T:571.0(22.94%),B:5615.5(12.67%),P:1e-44
|tomtom_result=FHL1#MA0295.1;0;0.000654241;0.311419;0.29033;8;TCTGCGTCAC;TTTGCGTC;-!ARG81#MA0272.1;-2;0.000753072;0.358462;0.29033;8;TCTGCGTCAC;AGAGTCAC;-!ARG80#MA0271.1;-3;0.000919274;0.437575;0.29033;6;TCTGCGTCAC;GCGTCT;-!NFE2L2#MA0150.1;1;0.00251481;1.19705;0.562266;10;TCTGCGTCAC;TGCTGAGTCAT;-!Fos#MA0099.1;-2;0.0032893;1.56571;0.562266;8;TCTGCGTCAC;TGACTCAC;-!AP1#MA0099.2;-2;0.00361202;1.71932;0.562266;7;TCTGCGTCAC;TGAGTCA;-!Sox2#MA0143.1;0;0.00450763;2.14563;0.562266;10;TCTGCGTCAC;TTTGCATAACAAAGG;-!CST6#MA0286.1;-1;0.00503861;2.39838;0.562266;9;TCTGCGTCAC;TTACGTCAT;-!TGA1A#MA0129.1;-2;0.00586905;2.79367;0.562266;7;TCTGCGTCAC;TACGTCA;+!CRZ1#MA0285.1;-1;0.00593436;2.82476;0.562266;9;TCTGCGTCAC;CTAAGCCAC;+!CREB1#MA0018.1;-2;0.00859725;4.09229;0.600908;8;TCTGCGTCAC;GACGTCACCAGG;-!Pax2#MA0067.1;-3;0.00945825;4.50213;0.600908;7;TCTGCGTCAC;GCGTGACT;-!PPARG#MA0066.1;0;0.0102182;4.86385;0.600908;10;TCTGCGTCAC;AGTAGGTCACCGTGACCTAC;-!Mafb#MA0117.1;-3;0.0105328;5.01363;0.600908;7;TCTGCGTCAC;GCGTCAGC;-!Pou5f1#MA0142.1;1;0.0107818;5.13211;0.600908;10;TCTGCGTCAC;ATTTGCATAACAAAG;-!ESR1#MA0112.2;3;0.012523;5.96097;0.64679;10;TCTGCGTCAC;AGGTCAGGGTGACCTGGGCC;-!CUP9#MA0288.1;0;0.0129703;6.17386;0.64679;9;TCTGCGTCAC;AATGTGTCA;-!RORA_1#MA0071.1;1;0.0152519;7.25992;0.722541;9;TCTGCGTCAC;ATCAAGGTCA;+!ESR2#MA0258.1;-1;0.0170277;8.10517;0.733332;9;TCTGCGTCAC;CAAGGTCACGGTGACCTG;+!GCN4#MA0303.1;5;0.0191757;9.12765;0.745134;10;TCTGCGTCAC;CAAGGGATGAGTCATACTTCA;+!RXR::RAR_DR5#MA0159.1;5;0.0194166;9.24229;0.745134;10;TCTGCGTCAC;TGACCTCTCCGTGACCT;-!Tal1::Gata1#MA0140.1;4;0.0205815;9.7968;0.745134;10;TCTGCGTCAC;CTTATCTGTCCCCACCAG;-!bZIP910#MA0096.1;-3;0.0206511;9.82991;0.745134;7;TCTGCGTCAC;ACGTCAT;-
}}
}}

Latest revision as of 11:59, 7 September 2012

Full Name: 5-TCTGCGTCAC,CNhs13223,BestGuess:CREB1.p2.SwissRegulon.nucfreq(0.738713041987632),T:571.0(22.94%),B:5615.5(12.67%),P:1e-44

Motif matrix
POACGT
1135.32736.54421.698377.431
285.079374.005105.0646.852
3222.695.1396.852336.319
458.24254.816387.13870.804
5146.176394.56117.1313.133
648.5352.855513.95.71
749.67734.2650.248436.815
892.502344.88443.39690.218
9455.0873.42645.10967.378
1041.683405.98139.39983.937

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FHL1#MA0295.100.0006542410.3114190.290338TCTGCGTCACTTTGCGTC-
ARG81#MA0272.1-20.0007530720.3584620.290338TCTGCGTCACAGAGTCAC-
ARG80#MA0271.1-30.0009192740.4375750.290336TCTGCGTCACGCGTCT-
NFE2L2#MA0150.110.002514811.197050.56226610TCTGCGTCACTGCTGAGTCAT-
Fos#MA0099.1-20.00328931.565710.5622668TCTGCGTCACTGACTCAC-
AP1#MA0099.2-20.003612021.719320.5622667TCTGCGTCACTGAGTCA-
Sox2#MA0143.100.004507632.145630.56226610TCTGCGTCACTTTGCATAACAAAGG-
CST6#MA0286.1-10.005038612.398380.5622669TCTGCGTCACTTACGTCAT-
TGA1A#MA0129.1-20.005869052.793670.5622667TCTGCGTCACTACGTCA+
CRZ1#MA0285.1-10.005934362.824760.5622669TCTGCGTCACCTAAGCCAC+
CREB1#MA0018.1-20.008597254.092290.6009088TCTGCGTCACGACGTCACCAGG-
Pax2#MA0067.1-30.009458254.502130.6009087TCTGCGTCACGCGTGACT-
PPARG#MA0066.100.01021824.863850.60090810TCTGCGTCACAGTAGGTCACCGTGACCTAC-
Mafb#MA0117.1-30.01053285.013630.6009087TCTGCGTCACGCGTCAGC-
Pou5f1#MA0142.110.01078185.132110.60090810TCTGCGTCACATTTGCATAACAAAG-
ESR1#MA0112.230.0125235.960970.6467910TCTGCGTCACAGGTCAGGGTGACCTGGGCC-
CUP9#MA0288.100.01297036.173860.646799TCTGCGTCACAATGTGTCA-
RORA_1#MA0071.110.01525197.259920.7225419TCTGCGTCACATCAAGGTCA+
ESR2#MA0258.1-10.01702778.105170.7333329TCTGCGTCACCAAGGTCACGGTGACCTG+
GCN4#MA0303.150.01917579.127650.74513410TCTGCGTCACCAAGGGATGAGTCATACTTCA+
RXR::RAR_DR5#MA0159.150.01941669.242290.74513410TCTGCGTCACTGACCTCTCCGTGACCT-
Tal1::Gata1#MA0140.140.02058159.79680.74513410TCTGCGTCACCTTATCTGTCCCCACCAG-
bZIP910#MA0096.1-30.02065119.829910.7451347TCTGCGTCACACGTCAT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:5-TCTGCGTCAC&oldid=2133533"