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MCL coexpression mm9:198: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_mean=0.0111318041201952,0.00749852371287477,0.00339297429774325,0,0,0.0288172675722675,0.0269577586709762,0.0194191801381887,0.00682555283682219,0.0114500074325365,0.00559581236952433,0.00133931983549556,0.0105960789174965,0.0075803636148895,0.00722079432348171,0.00667301271109313,0,0.0026503205564147,0.00232517383951598,0,0.00358089713688794,0.00536018535525115,0.0109405887667604,0.0126897035834276,0.0131172393438146,0.00691933471805569,0.0151020795577446,0.0152680108382397,0.00157407308994576,0,0.0105727551725912,0.00741744987240181,0.00946066540727996,0,0.0123019130317642,0.0102510522672445,0.0135498525365206,0,0,0,0,0,0,0.0031048193962442,0.00567871406880055,0.00435382578691956,0,0,0,0,0,0,0.00140337504612392,0.00493500551028317,0.00465177079542821,0.00517519542315408,0.0104774052834846,0.0112878283825343,0.00166705818863524,0,0,0.00264021144253431,0,0,0,0,0,0,0.00377916544754721,0,0.00490393879515564,0,0.00180560214755267,0.00104547478923611,0.000828110772714352,0,0.0236616497812081,0.00892289138807166,0.00993062642083133,0,0.000792058824126302,0,0,0,0.0012865272435454,0,0.00361296427992091,0.00309295563161119,0.0019364109975818,0.00320620739192972,0.0229867945387772,0.00561691468085362,0,0,0,0,0.0148740478723013,0.0040776918510535,0,0,0.0120005932573274,0,0,0,0.00502811822685499,0.003709009906774,0.00740365881216588,0.0121613272777385,0.00897662728589998,0.002504546642125,0.00289490264834281,0,0.00779125294942481,0.0025404440814075,0.00100587509846209,0.00107103701770656,0.00901694481517389,0,0.0057337837168189,0.0108426860619926,0.00330978726053981,0.0107306230860421,0.0571200650298209,0,0,0.00927757973534487,0,0,0.00108231203164856,0.0129331229711853,0.011946921697413,0.00107093864167797,0.0029001293048681,0.00206023417225104,0.0299495306425315,0.0277705310980679,0.0326345514106255,0.0118283744144525,0,0.0200331713899541,0.00110676522977315,0.00374460602554614,0.0190045000416285,0.121176982661812,0.0195216344137993,0.0165009765553939,0.0122816163429055,0.0413878041699551,0.00825293876091235,0.0076037057662732,0.0235370163176928,0.0324518587356484,0.0975909193816144,0.341196273807734,0.464955796166225,0.00303184294053335,0,0.0037567796931289,0,0,0.00190625545869311,0.00299603534119077,0.00870032769550086,0.00625277177748483,0.00259609675069738,0.0113498611067201,0.00430053684990213,0.00689499156990983,0.00595435505756565,0.0121171898185724,0.00141055572843573,0,0.00179582607485193,0.00113941876539612,0.00690745220795271,0,0.00516618198613087,0.00212295532068012,0.00671298020354668,0.00188946102976445,0.00832229015601118,0.0030660682327596,0.00181678209531237,0.023436183787689,0,0.00413835535672062,0.00202861800989222,0.0209405857903201,0.00459056691011151,0,0.00777277247315562,0.00467636016677445,0,0,0,0.0215263789209677,0.00160389676193073,0.00486753603536575,0.000554789423182987,0.00124571624853199,0,0.00526388782719756,0,0.00139610851912782,0.00162362741502163,0,0,0.00195487031378529,0.00410475966691633,0.00457555804144867,0.00135951387020141,0.00439003192748667,0.00806202212729973,0.00286247343372338,0.0122860734694871,0.00777483726616562,0.00579300771185692,0,0.0103545768986207,0.00314005461422412,0.00938237001229251,0.00406314084770234,0.00830462274356319,0.0180263143496101,0.021642820889443,0.0126582739370231,0.0194873241281932,0.0162974563857516,0.00768620082673865,0.0197542687184643,0.0163794002493174,0.00952195411996606,0,0.00392959929262954,0.00723750840886537,0.00838572094133781,0.00269433652896385,0.00272623850670602,0.00256574007195042,0.0140731000462869,0,0,0,0.00193875769357481,0.00333431964321592,0.00225526169195033,0.00615074195735417,0.0023197606154145,0.00527068023771948,0,0.00692365872315703,0.00148269741561856,0.0116128176627138,0.0123500261621339,0,0.00691716955456199,0.00666871740978794,0.0015632829578278,0,0,0.00415951974757988,0,0.0027587283076125,0.00248475040899685,0,0,0.00265098440379437,0.00278287344670912,0.00318250250236487,0.00175706750826128,0.00570085083372937,0.00445507759611179,0.00395239150888075,0.0072145258830945,0.0176592487896823,0.00729138586154877,0.0051089372193487,0.76370874412592,0.886383416582599,0.789769096532751,0.775481250074894,0.712939130285942,0.00231433263268085,0.0076952284052754,0.00408704047348573,0.00169763752229868,0.00307456822749447,0.0015614815782953,0.00218668558803513,0.00868175404006364,0.00264772534263004,0.00223285468056575,0.00117122023493866,0.120759242056953,0.0086574131050994,0.0033492059462889,0.0155787119430501,0.0470090449862833,0.0796925986639503,0.173773962098218,0.171880225284135,0.14320282696228,0.00517738823788032,0.00874474638725463,0,0.00965644825437127,0.00517295692403767,0.00415787300516127,0.00504203215553258,0.0101302622605762,0.00909710612337926,0.01506936317977,0.0036089160924161,0,0.00823219793089533,0.0423095513999793,0.0279418078509641,0.053313393044519,0.0604820737072778,0.0587121136978621,0.0587109053227438,0.0723320874474433,0.0681160461574699,0.0578724579243378,0.045295833863521,0.0609239936393191,0.0663040424343193,0.062814939613405,0.073567736281501,0.110935582679999,0.00181387945326295,0,0,0.00775021670301478,0.00155625725826243,0.0130921116203033,0.0716102601113588,0,0.00683913324964842,0,0.00819582806851413,0.00286971682306955,0,0,0,0,0,0.00377506650368698,0.00170654174517027,0.00607605983020171,0.00713105051033811,0.0726490215227099,0.0199833765387441,0.0901953640637555,0.101533073434023,0.102825156361223,0.102874320464107,0.108044305672569,0.106555762585339,0.123889061569517,0.112520826798622,0.107914857787046,0.103310477757708,0.0890090333411677,0.0944246003269832,0.0942721867950803,0.102230983970478,0.0918711826301051,0.107798842944206,0.111445319739156,0.100715687118796,0.115406359694872,0.104638007300678,0.0958934895223555,0.0996309994915387,0.104580148596159,0.117763424035786,0.0784563625572094,0.101399915292701,0.100089518258837,0.0851467528487965,0.1073523466028,0.289555794637134,0.208380754390602,0.3254829468532,0.419726024029389,0.21502079386361,0.256380255490369,0.0497467691166539
|gostat_on_MCL_coexpression=
}}

Latest revision as of 14:52, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:36246495..36246516,-p@chr11:36246495..36246516
-
Mm9::chr11:36246521..36246530,-p@chr11:36246521..36246530
-
Mm9::chr11:36246541..36246552,-p@chr11:36246541..36246552
-
Mm9::chr11:63277423..63277434,-p@chr11:63277423..63277434
-
Mm9::chr11:63277457..63277476,-p@chr11:63277457..63277476
-
Mm9::chr11:69153489..69153491,+p2@ENSMUST00000129321
Mm9::chr11:95086849..95086855,-p3@ENSMUST00000150818
Mm9::chr12:105486102..105486107,+p1@Serpina3h
Mm9::chr12:71255111..71255144,+p1@Abhd12b
Mm9::chr13:109001454..109001477,+p@chr13:109001454..109001477
+
Mm9::chr13:8973772..8973777,-p@chr13:8973772..8973777
-
Mm9::chr15:101770858..101770865,-p2@Krt79
Mm9::chr15:35197285..35197320,+p@chr15:35197285..35197320
+
Mm9::chr15:62379515..62379523,-p@chr15:62379515..62379523
-
Mm9::chr16:56831943..56831948,-p14@Tmem45a
Mm9::chr16:56831951..56831974,-p3@Tmem45a
Mm9::chr16:56831979..56831988,-p13@Tmem45a
Mm9::chr1:108757571..108757582,+p3@Serpinb5
Mm9::chr1:129125186..129125194,+p@chr1:129125186..129125194
+
Mm9::chr1:129125237..129125247,+p@chr1:129125237..129125247
+
Mm9::chr1:133938531..133938534,-p6@Mfsd4
Mm9::chr3:138005756..138005775,+p@chr3:138005756..138005775
+
Mm9::chr3:91885565..91885581,-p@chr3:91885565..91885581
-
Mm9::chr3:93001192..93001206,+p1@Flg2
Mm9::chr4:111678850..111678878,+p1@Skint1
Mm9::chr4:111678886..111678902,+p2@Skint1
Mm9::chr4:111707315..111707319,+p@chr4:111707315..111707319
+
Mm9::chr4:111745245..111745261,+p1@Skint4
Mm9::chr4:111904951..111904991,+p1@Skint3
Mm9::chr4:112106584..112106598,-p1@Skint9
Mm9::chr4:112106610..112106619,-p2@Skint9
Mm9::chr4:112917916..112917919,-p@chr4:112917916..112917919
-
Mm9::chr4:112959560..112959609,-p1@Skint6
Mm9::chr4:138313406..138313411,-p2@Pla2g2f
Mm9::chr4:3943671..3943686,-p5@Sdr16c5
Mm9::chr5:121297373..121297400,+p1@Oas1f
Mm9::chr5:121297420..121297432,+p@chr5:121297420..121297432
+
Mm9::chr6:144579044..144579056,-p@chr6:144579044..144579056
-
Mm9::chr6:144727873..144727894,-p@chr6:144727873..144727894
-
Mm9::chr7:51097336..51097345,+p5@Klk5
Mm9::chr7:89137468..89137479,-p3@Bnc1
Mm9::chr8:125930993..125931014,+p1@Mc1r
Mm9::chr8:63958211..63958219,+p@chr8:63958211..63958219
+
Mm9::chr8:84291691..84291705,+p10@Inpp4b
Mm9::chr9:115817590..115817615,+p1@Gadl1
Mm9::chr9:42979511..42979514,-p@chr9:42979511..42979514
-
Mm9::chr9:43013917..43013968,-p1@Pou2f3
Mm9::chrX:109811984..109811995,-p@chrX:109811984..109811995
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
zone of skin1.43e-165
skin epidermis1.43e-165
skin of body1.43e-165
integument1.43e-165
surface1.43e-165
outer epithelium1.43e-165
integumental system1.43e-165
enveloping layer of ectoderm1.43e-165


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000306213
MA0004.10.02872
MA0006.10.0774616
MA0007.10.107576
MA0009.10.664993
MA0014.12.6255e-06
MA0017.10.0347377
MA0019.10.126267
MA0024.10.207177
MA0025.10.410131
MA0027.11.74268
MA0028.10.00514829
MA0029.10.564081
MA0030.13.21116
MA0031.10.520986
MA0038.10.259662
MA0040.10.684797
MA0041.10.176227
MA0042.10.319943
MA0043.12.27195
MA0046.10.260741
MA0048.10.632539
MA0050.10.62981
MA0051.10.269915
MA0052.10.250075
MA0055.11.29661
MA0056.10
MA0057.10.014235
MA0058.10.0114837
MA0059.10.0131504
MA0060.10.00736667
MA0061.10.199106
MA0063.10
MA0066.10.0704666
MA0067.10.502189
MA0068.10.57366
MA0069.11.2912
MA0070.10.682736
MA0071.10.151061
MA0072.10.237886
MA0073.10.000777462
MA0074.10.208723
MA0076.10.00826052
MA0077.10.22338
MA0078.10.639483
MA0081.10.196535
MA0083.10.303878
MA0084.10.795166
MA0087.10.272661
MA0088.10.125399
MA0089.10
MA0090.11.89682
MA0091.10.0318905
MA0092.10.443678
MA0093.10.00578827
MA0095.10
MA0098.10
MA0100.10.43601
MA0101.10.177883
MA0103.10.413299
MA0105.10.0459501
MA0106.10.656281
MA0107.10.396146
MA0108.20.42869
MA0109.10
MA0111.10.477267
MA0113.10.0837682
MA0114.10.0408122
MA0115.10.306529
MA0116.10.313298
MA0117.10.773181
MA0119.10.587969
MA0122.10.297394
MA0124.10.457493
MA0125.10.397116
MA0130.10
MA0131.10.123911
MA0132.10
MA0133.10
MA0135.10.331697
MA0136.10.0643697
MA0139.10.0432041
MA0140.10.0532016
MA0141.10.0094941
MA0142.10.166953
MA0143.10.0909024
MA0144.10.0425742
MA0145.10.028287
MA0146.10.0114879
MA0147.10.0151274
MA0148.10.311778
MA0149.10.0153055
MA0062.20.000174507
MA0035.20.444702
MA0039.20.00358377
MA0138.20.764638
MA0002.20.181338
MA0137.20.0465806
MA0104.20.0213595
MA0047.20.258791
MA0112.20.0546713
MA0065.20.0962474
MA0150.10.489586
MA0151.10
MA0152.10.934308
MA0153.10.344375
MA0154.11.23736
MA0155.10.0426231
MA0156.10.249414
MA0157.10.889068
MA0158.10
MA0159.10.0567806
MA0160.10.134836
MA0161.10
MA0162.10.425845
MA0163.10.00795768
MA0164.11.79958
MA0080.20.0369391
MA0018.20.0681705
MA0099.20.372755
MA0079.29.14759e-07
MA0102.20.844055
MA0258.10.0839275
MA0259.10.104721
MA0442.10
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