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MCL coexpression mm9:257: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
}}

Latest revision as of 14:58, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:107599358..107599370,+p7@Ppp1r12a
Mm9::chr10:127838887..127838909,-p@chr10:127838887..127838909
-
Mm9::chr10:60895963..60895997,-p@chr10:60895963..60895997
-
Mm9::chr10:69631904..69631917,+p@chr10:69631904..69631917
+
Mm9::chr10:80072081..80072096,+p@chr10:80072081..80072096
+
Mm9::chr11:59026013..59026037,-p@chr11:59026013..59026037
-
Mm9::chr11:60368447..60368462,+p@chr11:60368447..60368462
+
Mm9::chr11:60536153..60536180,-p@chr11:60536153..60536180
-
Mm9::chr11:94075871..94075905,+p@chr11:94075871..94075905
+
Mm9::chr12:52903612..52903639,-p@chr12:52903612..52903639
-
Mm9::chr13:49017568..49017587,-p@chr13:49017568..49017587
-
Mm9::chr13:54202171..54202191,+p@chr13:54202171..54202191
+
Mm9::chr14:21501964..21501989,+p@chr14:21501964..21501989
+
Mm9::chr14:47930214..47930239,+p@chr14:47930214..47930239
+
Mm9::chr14:70718660..70718676,-p@chr14:70718660..70718676
-
Mm9::chr16:32052409..32052436,-p@chr16:32052409..32052436
-
Mm9::chr16:77037641..77037659,+p@chr16:77037641..77037659
+
Mm9::chr16:87719360..87719409,+p@chr16:87719360..87719409
+
Mm9::chr17:35380150..35380172,+p@chr17:35380150..35380172
+
Mm9::chr19:36953750..36953769,+p@chr19:36953750..36953769
+
Mm9::chr19:5646850..5646860,+p@chr19:5646850..5646860
+
Mm9::chr2:164327002..164327016,+p@chr2:164327002..164327016
+
Mm9::chr3:122972610..122972623,+p@chr3:122972610..122972623
+
Mm9::chr3:122996676..122996724,+p@chr3:122996676..122996724
+
Mm9::chr5:100802525..100802546,-p4@Sec31a
Mm9::chr5:138187583..138187602,+p6@Tsc22d4
Mm9::chr5:144266979..144267006,-p@chr5:144266979..144267006
-
Mm9::chr6:124912443..124912456,-p@chr6:124912443..124912456
-
Mm9::chr6:88465402..88465420,-p@chr6:88465402..88465420
-
Mm9::chr7:26533442..26533477,-p@chr7:26533442..26533477
-
Mm9::chr7:53306028..53306031,+p@chr7:53306028..53306031
+
Mm9::chr8:73926681..73926699,+p@chr8:73926681..73926699
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
immaterial anatomical entity7.56e-1079
organism subdivision3.12e-09150
trunk3.95e-0990
trunk region element1.43e-0879
anatomical cavity2.28e-0839
multi-cellular organism6.03e-08333
abdomen element6.69e-0849
abdominal segment element6.69e-0849
abdominal segment of trunk6.69e-0849
abdomen6.69e-0849
body cavity precursor6.81e-0838
body cavity1.10e-0737
body cavity or lining1.10e-0737
anatomical system6.07e-07308
anatomical group6.07e-07308
trunk mesenchyme8.14e-0745
endoderm-derived structure9.89e-07118
endoderm9.89e-07118
presumptive endoderm9.89e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000742834
MA0004.10.26216
MA0006.10.0915448
MA0007.10.894156
MA0009.10.356735
MA0014.10.00213988
MA0017.10.272987
MA0019.11.18129
MA0024.10.322453
MA0025.10.553002
MA0027.11.91746
MA0028.10.099689
MA0029.10.824884
MA0030.10.31081
MA0031.10.284004
MA0038.10.458648
MA0040.10.366712
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MA0442.10