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MCL coexpression mm9:426: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
}}

Latest revision as of 15:17, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr12:29308147..29308161,-p1@Colec11
Mm9::chr12:29308178..29308194,-p2@Colec11
Mm9::chr12:29308215..29308236,-p4@Colec11
Mm9::chr12:29308237..29308259,-p3@Colec11
Mm9::chr12:29308266..29308279,-p5@Colec11
Mm9::chr14:34754207..34754238,+p1@Gdf2
Mm9::chr15:54242202..54242219,+p2@Colec10
Mm9::chr15:54242222..54242233,+p3@Colec10
Mm9::chr15:54242310..54242352,+p1@Colec10
Mm9::chr16:45434966..45434967,+p@chr16:45434966..45434967
+
Mm9::chr2:25316589..25316600,-p5@BC029214
Mm9::chr3:102768047..102768060,-p1@Nr1h5
Mm9::chr3:82850611..82850638,+p@chr3:82850611..82850638
+
Mm9::chr4:46551738..46551739,+p@chr4:46551738..46551739
+
Mm9::chr5:137853851..137853855,-p@chr5:137853851..137853855
-
Mm9::chr5:90905612..90905631,-p@chr5:90905612..90905631
-
Mm9::chr8:120225720..120225750,+p2@Hsd17b2
Mm9::chr9:20684162..20684182,-p1@Angptl6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver6.20e-2522
epithelial sac6.20e-2522
digestive gland6.20e-2522
epithelium of foregut-midgut junction6.20e-2522
anatomical boundary6.20e-2522
hepatobiliary system6.20e-2522
foregut-midgut junction6.20e-2522
hepatic diverticulum6.20e-2522
liver primordium6.20e-2522
septum transversum6.20e-2522
liver bud6.20e-2522
digestive tract diverticulum1.69e-2323
sac1.69e-2323
exocrine gland5.60e-2125
exocrine system5.60e-2125
trunk mesenchyme4.43e-1545
abdomen element4.67e-1349
abdominal segment element4.67e-1349
abdominal segment of trunk4.67e-1349
abdomen4.67e-1349
subdivision of trunk1.30e-0966
mesenchyme1.60e-0961
entire embryonic mesenchyme1.60e-0961
epithelial tube1.44e-0847
endocrine gland2.26e-0860
foregut1.19e-0780
trunk region element3.67e-0779
gland3.96e-0765


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000367447
MA0004.10.191582
MA0006.10.0854592
MA0007.10.181021
MA0009.10.5557
MA0014.10.00134458
MA0017.10.673859
MA0019.11.02123
MA0024.10.516087
MA0025.10.773017
MA0027.12.16618
MA0028.10.0910441
MA0029.10.496599
MA0030.10.502474
MA0031.12.06383
MA0038.10.301835
MA0040.11.39189
MA0041.10.140298
MA0042.12.58826
MA0043.10.644695
MA0046.10.58854
MA0048.10.332197
MA0050.11.17524
MA0051.10.309072
MA0052.10.574473
MA0055.10.75569
MA0056.10
MA0057.10.146647
MA0058.10.127732
MA0059.10.13543
MA0060.10.0476793
MA0061.10.476726
MA0063.10
MA0066.10.293002
MA0067.10.879099
MA0068.10.0116947
MA0069.10.574784
MA0070.10.565924
MA0071.10.625332
MA0072.11.37306
MA0073.10.129157
MA0074.10.264633
MA0076.10.110983
MA0077.10.538513
MA0078.11.60264
MA0081.10.150322
MA0083.10.643958
MA0084.11.1979
MA0087.10.604077
MA0088.12.20031
MA0089.10
MA0090.10.969034
MA0091.11.10231
MA0092.10.167962
MA0093.10.316906
MA0095.10
MA0098.10
MA0100.10.255651
MA0101.10.435524
MA0103.10.106139
MA0105.10.453893
MA0106.10.907208
MA0107.10.335745
MA0108.20.413973
MA0109.10
MA0111.10.177475
MA0113.10.319332
MA0114.10.0595575
MA0115.10.647296
MA0116.10.08535
MA0117.10.617392
MA0119.10.141504
MA0122.10.635764
MA0124.10.828115
MA0125.10.757653
MA0130.10
MA0131.10.390422
MA0132.10
MA0133.10
MA0135.10.67864
MA0136.10.280269
MA0139.10.0357525
MA0140.10.710317
MA0141.10.11774
MA0142.10.457961
MA0143.10.332773
MA0144.10.0609575
MA0145.10.0329339
MA0146.10.0100022
MA0147.10.236435
MA0148.11.74375
MA0149.18.99128
MA0062.20.0237736
MA0035.24.68397
MA0039.20.0352926
MA0138.20.383644
MA0002.20.611367
MA0137.20.116005
MA0104.20.0420926
MA0047.23.12495
MA0112.20.0329313
MA0065.20.033152
MA0150.10.180943
MA0151.10
MA0152.10.814717
MA0153.10.694211
MA0154.10.0127415
MA0155.10.0080339
MA0156.10.110475
MA0157.10.429861
MA0158.10
MA0159.10.0715631
MA0160.10.592791
MA0161.10
MA0162.10.000456116
MA0163.10.000347337
MA0164.10.280556
MA0080.20.337091
MA0018.20.288261
MA0099.20.37828
MA0079.22.79101e-05
MA0102.21.24942
MA0258.10.197969
MA0259.10.221921
MA0442.10
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