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MCL coexpression mm9:332: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0617533076901792,0.167021383342531,0.0766055250094606,0.073061928412231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276611790108454,0.309824270834808,0.468909851449648,0.196539915357397,0.470638849457228,0.666451790407333,0.0973729612719386,0.833016988212115,0,0,0.801973205485945,0.474128839711451,0.206472101128951,0,0,0,0,0,0,0,0.0606187686764715,0,0,0,0,0.0144168692409649,0.0652962901395099,0.393776471515912,0.0509235292940968,0,0,0.0531247310291112,0,0.0719048733411253,0.492231332238742,0.285605112479294,0.319727220382515,0.13169972602828,0.252945652791723,0,0.329323927260509,0.210560384347393,0.219476383714911,0.752574361680623,0.578182597808376,0.499554750446522,0.0856015340459513,0,0,0,0,0,0,0.0922800703916586,0.144115843815369,0.301301414003315,0.399462222867001,0.256433944073506,0.208923064725814,0.26073884111471,0.363143072626666,0.0338533374824575,0,0,0,0,0,0,0,0.377304345500048,0.62787416145087,0.286883218702149,0.323633086800946,0.30051051677979,0.233837768479878,0,0.0662136857075299,0.17686373673239,0.16449974652019,0.0773548534010084,0,0,0,0,0.359350501914237,0,0.20708313509219,0.289345181058519,0.173463294671616,0.0244569372888948,0,0,0,0,0.0670132089181356,0.0779341159210384,0.0880872011895838,0,0,0,0,0.0118434804215083,0,0.386977062110387,0.0327457969304647,0,0,0,0,0,0,0.258834725042115,0.506056451303142,0.61978871943292,0.453710989783707,0.424172168473478,0.407157040793026,0.117016442799081,0.086880916817156,0.0642538110976656,0,0.0228602229488684,0,0,0,0,0,0,0.0481354699899057,0,0,0,0,0.0847275925579778,0.0930603692915911,0.160047342874364,0.108252561213616,0,0.0505972332835515,0,0,0,0.184263935055167,0.327050288784088,0.0188769178198,0,0.467195278735132,0.344253557893349,0.513651804920037,0.135697529497166,0.349723951144176,0.334265559718133,0.520709425566521,0.59598260686367,0.119268019631849,0,0,1.13852407364943,0.0719044921483595,0.0289421903639158,0.0843392403965415,0.443012877083619,0.585900563393588,0.773361423100607,0.08125963181997,0.0915514965999916,0.153407546465022,0,0,0.300601166923216,0.212988123073707,0.0929818051526577,0.0946478847090747,0,0.0738741926906438,0,0.0407433005351683,0.115574904793872,0.0749511157581746,0,0,0,0,0,0,0,0.304619189055585,0.308207356638408,0.459663032892914,0.320522820047392,0.317748395375377,0.174908581800133,0,0,0,0,0.00367911947736864,0,0.0308472664630311,0,0.200741047565148,0.178058392646392,0.126635353755124,0.0214324163835695,0,0,0,0.0801664161057822,0.221891379088135,0.14294057921333,0.132916844396872,0.0787037500278776,0,0.0386727748599191,2.76666533748533e-05,0,0,0,0,0,0,0,0,0,0,0.024439344132073,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0415403319168457,0.334561517845694,0.287164319387424,0.730008355050047,0.130782681819857,0,0.522670843462101,0.622450057974784,0.580399247619462,0.691539701294513,0.532205868894497,0.581012429749172,0.591385947497104,0.598883657407355,0.540235566753721,0.586335447484524,0.576815020385741,0.555413716176276,0.586888959882262,0.525297817312034,0.75020926935113,0.781165685131869,0.660537532925174,0.4922955638601,0.430392569320331,0.566254830862093,0.708850877331936,0.784936387284134,0.553916769658957,0.636553092194798,0.50436171212853,0.648131275987531,0.608962800683297,0.467709979704834,0.371131851656515,0.300865434577911,0.401028147108463,0.26939249630118,0.502202396541968,0.274703995207021,0.284192632446493
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
}}

Latest revision as of 15:07, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:80765666..80765686,-p1@ENSMUST00000163009
Mm9::chr12:110787039..110787058,+p19@Meg3
Mm9::chr2:174114977..174114999,+p@chr2:174114977..174114999
+
Mm9::chr2:174115002..174115017,+p@chr2:174115002..174115017
+
Mm9::chr2:174115025..174115036,+p@chr2:174115025..174115036
+
Mm9::chr2:174115045..174115083,+p@chr2:174115045..174115083
+
Mm9::chr2:174115120..174115139,+p@chr2:174115120..174115139
+
Mm9::chr2:174115144..174115178,+p@chr2:174115144..174115178
+
Mm9::chr2:174115179..174115188,+p@chr2:174115179..174115188
+
Mm9::chr2:174115285..174115357,+p@chr2:174115285..174115357
+
Mm9::chr2:174115377..174115400,+p@chr2:174115377..174115400
+
Mm9::chr2:174115416..174115522,+p@chr2:174115416..174115522
+
Mm9::chr2:174127763..174127768,+p@chr2:174127763..174127768
+
Mm9::chr2:174129610..174129613,+p@chr2:174129610..174129613
+
Mm9::chr2:174129835..174129849,+p@chr2:174129835..174129849
+
Mm9::chr2:174129862..174129873,+p@chr2:174129862..174129873
+
Mm9::chr2:174130055..174130062,+p@chr2:174130055..174130062
+
Mm9::chr2:174130063..174130072,+p@chr2:174130063..174130072
+
Mm9::chr2:174130076..174130077,+p@chr2:174130076..174130077
+
Mm9::chr2:174130102..174130107,+p@chr2:174130102..174130107
+
Mm9::chr2:174130228..174130231,+p@chr2:174130228..174130231
+
Mm9::chr2:174130256..174130259,+p@chr2:174130256..174130259
+
Mm9::chr2:174133814..174133836,+p@chr2:174133814..174133836
+
Mm9::chr2:174133946..174134023,+p@chr2:174133946..174134023
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000310914
MA0004.10.126659
MA0006.10.0460466
MA0007.10.756875
MA0009.10.452863
MA0014.11.04877e-05
MA0017.10.0561984
MA0019.10.30302
MA0024.10.415603
MA0025.10.660968
MA0027.12.04174
MA0028.10.0499059
MA0029.10.397373
MA0030.11.03991
MA0031.10.373333
MA0038.10.220281
MA0040.10.463641
MA0041.10.290933
MA0042.19.06389
MA0043.10.53743
MA0046.10.483941
MA0048.10.00405237
MA0050.10.149886
MA0051.10.226644
MA0052.10.47061
MA0055.10.00480794
MA0056.10
MA0057.10.0191121
MA0058.10.0765185
MA0059.10.0823381
MA0060.10.0217699
MA0061.10.0296722
MA0063.10
MA0066.10.212546
MA0067.10.764133
MA0068.10.0205783
MA0069.10.470904
MA0070.10.462521
MA0071.10.149369
MA0072.10.455219
MA0073.116.6643
MA0074.10.187944
MA0076.10.064121
MA0077.10.436665
MA0078.10.698911
MA0081.10.093791
MA0083.10.536725
MA0084.11.07765
MA0087.10.4987
MA0088.10.0733979
MA0089.10
MA0090.10.107485
MA0091.10.418347
MA0092.10.349135
MA0093.10.0530878
MA0095.10
MA0098.10
MA0100.11.01978
MA0101.10.08669
MA0103.10.218786
MA0105.10.00808239
MA0106.10.256379
MA0107.10.0580742
MA0108.20.320962
MA0109.10
MA0111.10.115252
MA0113.10.2357
MA0114.10.0290062
MA0115.10.539917
MA0116.10.174756
MA0117.10.511373
MA0119.10.0869793
MA0122.10.528896
MA0124.11.7
MA0125.10.646095
MA0130.10
MA0131.10.299487
MA0132.10
MA0133.10
MA0135.10.569948
MA0136.10.201456
MA0139.10.0699025
MA0140.12.29737
MA0141.10.0690765
MA0142.10.361451
MA0143.10.247626
MA0144.10.123063
MA0145.10.906142
MA0146.10.287037
MA0147.10.0335355
MA0148.10.136186
MA0149.10.0894222
MA0062.20.00879313
MA0035.20.18328
MA0039.27.41218e-06
MA0138.20.293335
MA0002.20.91042
MA0137.20.0677978
MA0104.20.0185242
MA0047.20.219739
MA0112.20.0857672
MA0065.20.00145912
MA0150.10.376372
MA0151.10
MA0152.11.83433
MA0153.10.584906
MA0154.10.973726
MA0155.10.0454229
MA0156.10.0637507
MA0157.10.335532
MA0158.10
MA0159.10.036714
MA0160.10.137981
MA0161.10
MA0162.10.00047031
MA0163.10.00179914
MA0164.10.201705
MA0080.20.212388
MA0018.20.208409
MA0099.20.288477
MA0079.26.479e-11
MA0102.21.12863
MA0258.10.0253198
MA0259.10.545142
MA0442.10
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