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MCL coexpression mm9:697: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!1.55e-14!92;UBERON:0000073!6.50e-11!54;UBERON:0001049!7.88e-10!52;UBERON:0005068!7.88e-10!52;UBERON:0006241!7.88e-10!52;UBERON:0007135!7.88e-10!52;UBERON:0000468!9.26e-10!333;UBERON:0004111!1.84e-09!122;UBERON:0000025!2.22e-09!114;UBERON:0002346!1.20e-08!64;UBERON:0003075!1.20e-08!64;UBERON:0007284!1.20e-08!64;UBERON:0000955!4.87e-08!47;UBERON:0006238!4.87e-08!47;UBERON:0010371!5.97e-08!73;UBERON:0002616!1.32e-07!46;UBERON:0007100!5.62e-07!18;UBERON:0000948!5.62e-07!18;UBERON:0005498!5.62e-07!18;UBERON:0004140!5.62e-07!18;UBERON:0009881!5.62e-07!18;UBERON:0004141!5.62e-07!18;UBERON:0003084!5.62e-07!18;UBERON:0007005!5.62e-07!18;UBERON:0004139!5.62e-07!18;UBERON:0004291!5.62e-07!18;UBERON:0004121!7.57e-07!95;UBERON:0000924!7.57e-07!95;UBERON:0006601!7.57e-07!95;UBERON:0000479!8.61e-07!349;UBERON:0001017!8.83e-07!73
}}

Latest revision as of 15:44, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:102697739..102697772,+p1@Higd1b
Mm9::chr11:77275827..77275923,+p3@Coro6
Mm9::chr17:43938862..43938873,+p9@Rcan2
Mm9::chr17:43938876..43938960,+p2@Rcan2
Mm9::chr2:55288799..55288810,+p6@Kcnj3
Mm9::chr4:128814103..128814120,+p4@Fndc5
Mm9::chr4:128814121..128814147,+p1@Fndc5
Mm9::chr4:128814164..128814185,+p3@Fndc5
Mm9::chr4:128814192..128814217,+p2@Fndc5
Mm9::chr9:121701596..121701608,-p2@Hhatl


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest1.55e-1492
regional part of nervous system6.50e-1154
neural tube7.88e-1052
neural rod7.88e-1052
future spinal cord7.88e-1052
neural keel7.88e-1052
multi-cellular organism9.26e-10333
anatomical conduit1.84e-09122
tube2.22e-09114
neurectoderm1.20e-0864
neural plate1.20e-0864
presumptive neural plate1.20e-0864
brain4.87e-0847
future brain4.87e-0847
ecto-epithelium5.97e-0873
regional part of brain1.32e-0746
primary circulatory organ5.62e-0718
heart5.62e-0718
primitive heart tube5.62e-0718
primary heart field5.62e-0718
anterior lateral plate mesoderm5.62e-0718
heart tube5.62e-0718
heart primordium5.62e-0718
cardiac mesoderm5.62e-0718
cardiogenic plate5.62e-0718
heart rudiment5.62e-0718
ectoderm-derived structure7.57e-0795
ectoderm7.57e-0795
presumptive ectoderm7.57e-0795
tissue8.61e-07349
central nervous system8.83e-0773


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.15.46361
MA0004.10.360508
MA0006.10.210471
MA0007.10.346734
MA0009.10.780842
MA0014.11.80909
MA0017.10.233089
MA0019.10.603066
MA0024.10.737933
MA0025.11.01089
MA0027.12.42079
MA0028.10.219287
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.10.496338
MA0040.10.79313
MA0041.10.291712
MA0042.10.279998
MA0043.10.875991
MA0046.10.816137
MA0048.10.509074
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.10.576005
MA0056.10
MA0057.10.059732
MA0058.10.273976
MA0059.10.28489
MA0060.10.145297
MA0061.10.973999
MA0063.10
MA0066.10.485868
MA0067.11.12095
MA0068.10.0621035
MA0069.10.801381
MA0070.10.791856
MA0071.10.395679
MA0072.10.783532
MA0073.13.58292
MA0074.10.451832
MA0076.10.249619
MA0077.10.762273
MA0078.10.536502
MA0081.10.305576
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.10.0379749
MA0089.10
MA0090.10.329158
MA0091.10.372635
MA0092.10.329444
MA0093.10.226349
MA0095.10
MA0098.10
MA0100.10.440912
MA0101.10.292867
MA0103.10.67982
MA0105.16.69063
MA0106.10.543967
MA0107.10.237082
MA0108.20.625209
MA0109.10
MA0111.10.90605
MA0113.10.516916
MA0114.10.167085
MA0115.10.878749
MA0116.11.13868
MA0117.10.846964
MA0119.10.293392
MA0122.10.866511
MA0124.11.06819
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.10.470672
MA0139.11.26076
MA0140.10.440804
MA0141.10.259554
MA0142.10.674191
MA0143.10.53259
MA0144.12.21785
MA0145.10.163161
MA0146.10.642452
MA0147.10.179496
MA0148.10.375491
MA0149.10.2978
MA0062.20.0948004
MA0035.20.44524
MA0039.23.09333
MA0138.26.13672
MA0002.20.781868
MA0137.22.03109
MA0104.20.418613
MA0047.20.495607
MA0112.21.03068
MA0065.20.0424448
MA0150.10.346631
MA0151.10
MA0152.10.495709
MA0153.10.92832
MA0154.11.81087
MA0155.10.0498353
MA0156.10.248865
MA0157.10.642984
MA0158.10
MA0159.11.05
MA0160.10.378276
MA0161.10
MA0162.16.2272
MA0163.10.439212
MA0164.10.471016
MA0080.20.237846
MA0018.20.480226
MA0099.20.584892
MA0079.22.84905
MA0102.21.49914
MA0258.10.473611
MA0259.10.50935
MA0442.10
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