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MCL coexpression mm9:738: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0001948;glycoprotein binding;0.00876448170675885;230904!GO:0030433;ER-associated protein catabolic process;0.00876448170675885;230904!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00876448170675885;230904!GO:0006516;glycoprotein catabolic process;0.0109544014866217;230904!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0113916410415616;230904!
|ontology_enrichment_celltype=CL:0002453!7.05e-07!8
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!1.22e-11!92;UBERON:0010371!1.97e-08!73;UBERON:0004121!2.55e-08!95;UBERON:0000924!2.55e-08!95;UBERON:0006601!2.55e-08!95;UBERON:0001049!4.95e-08!52;UBERON:0005068!4.95e-08!52;UBERON:0006241!4.95e-08!52;UBERON:0007135!4.95e-08!52;UBERON:0002346!1.13e-07!64;UBERON:0003075!1.13e-07!64;UBERON:0007284!1.13e-07!64;UBERON:0001017!1.14e-07!73;UBERON:0001016!1.89e-07!75;UBERON:0000073!3.10e-07!54
}}

Latest revision as of 15:48, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr17:23837109..23837139,-p@chr17:23837109..23837139
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Mm9::chr1:43787438..43787478,+p3@1500015O10Rik
Mm9::chr1:43787485..43787499,+p5@1500015O10Rik
Mm9::chr1:43787511..43787563,+p2@1500015O10Rik
Mm9::chr1:43787633..43787644,+p4@1500015O10Rik
Mm9::chr1:43787656..43787720,+p1@1500015O10Rik
Mm9::chr3:8863270..8863302,-p@chr3:8863270..8863302
-
Mm9::chr3:89031307..89031310,-p1@Mir92b
Mm9::chr4:147534722..147534739,+p1@Fbxo2
Mm9::chr4:147538326..147538348,+p@chr4:147538326..147538348
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0001948glycoprotein binding0.00876448170675885
GO:0030433ER-associated protein catabolic process0.00876448170675885
GO:0006515misfolded or incompletely synthesized protein catabolic process0.00876448170675885
GO:0006516glycoprotein catabolic process0.0109544014866217
GO:0043161proteasomal ubiquitin-dependent protein catabolic process0.0113916410415616



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
oligodendrocyte precursor cell7.05e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.51522
MA0004.10.360508
MA0006.11.13936
MA0007.10.346734
MA0009.10.780842
MA0014.12.6738
MA0017.10.233089
MA0019.10.603066
MA0024.10.737933
MA0025.11.01089
MA0027.12.42079
MA0028.10.219287
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.10.496338
MA0040.10.79313
MA0041.11.44369
MA0042.10.279998
MA0043.10.875991
MA0046.10.816137
MA0048.10.066679
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.10.344
MA0056.10
MA0057.10.059732
MA0058.10.273976
MA0059.13.01981
MA0060.10.446031
MA0061.10.16896
MA0063.10
MA0066.10.485868
MA0067.11.12095
MA0068.10.0621035
MA0069.10.801381
MA0070.10.791856
MA0071.10.395679
MA0072.10.783532
MA0073.10.593688
MA0074.10.451832
MA0076.10.249619
MA0077.10.762273
MA0078.10.536502
MA0081.10.824359
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.10.0379749
MA0089.10
MA0090.10.877277
MA0091.10.372635
MA0092.11.57894
MA0093.10.226349
MA0095.10
MA0098.10
MA0100.10.440912
MA0101.10.292867
MA0103.10.242398
MA0105.10.0911942
MA0106.10.543967
MA0107.10.237082
MA0108.21.51404
MA0109.10
MA0111.10.342068
MA0113.10.516916
MA0114.12.19906
MA0115.10.878749
MA0116.11.13868
MA0117.10.846964
MA0119.15.00795
MA0122.10.866511
MA0124.11.06819
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.10.470672
MA0139.10.385513
MA0140.10.440804
MA0141.10.259554
MA0142.10.674191
MA0143.10.53259
MA0144.10.506239
MA0145.10.371997
MA0146.12.4814
MA0147.11.6106
MA0148.10.979954
MA0149.10.2978
MA0062.20.314778
MA0035.20.44524
MA0039.20.11913
MA0138.20.590987
MA0002.20.781868
MA0137.20.257017
MA0104.21.9417
MA0047.20.495607
MA0112.23.72656
MA0065.23.73291
MA0150.10.346631
MA0151.10
MA0152.10.495709
MA0153.10.92832
MA0154.10.0653255
MA0155.10.186607
MA0156.10.248865
MA0157.10.642984
MA0158.10
MA0159.10.187774
MA0160.10.378276
MA0161.10
MA0162.10.27679
MA0163.12.5777
MA0164.12.06463
MA0080.20.237846
MA0018.22.09533
MA0099.20.584892
MA0079.20.0983396
MA0102.21.49914
MA0258.13.60812
MA0259.11.56071
MA0442.10
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