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MCL coexpression mm9:79: Difference between revisions

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{{MCL_coexpression_mm9
{
|coexpression_dpi_cluster_scores_mean=-

Latest revision as of 14:39, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127520357..127520365,+p1@Atp5b
Mm9::chr10:127774795..127774815,+p2@Cs
Mm9::chr10:22063232..22063247,+p@chr10:22063232..22063247
+
Mm9::chr10:42198205..42198249,-p1@Lace1
Mm9::chr10:43621588..43621651,+p1@Rtn4ip1
Mm9::chr10:43621661..43621673,+p2@Rtn4ip1
Mm9::chr10:77632471..77632537,-p1@D10Jhu81e
p1@LOC100046684
Mm9::chr10:79605154..79605168,+p3@Atp5d
Mm9::chr10:79712186..79712213,+p1@Ndufs7
Mm9::chr10:90586700..90586789,-p1@LOC100046151
p1@Slc25a3
Mm9::chr10:94964555..94964587,-p1@Mrpl42
Mm9::chr10:94964591..94964600,-p2@Mrpl42
Mm9::chr11:105927369..105927414,+p1@Taco1
Mm9::chr11:115281246..115281267,-p1@Atp5h
Mm9::chr11:120319352..120319396,-p1@1810049H13Rik
Mm9::chr11:3371499..3371525,-p1@ENSMUST00000120551
Mm9::chr11:3409227..3409230,-p@chr11:3409227..3409230
-
Mm9::chr11:52174571..52174628,+p1@Vdac1
Mm9::chr11:6191610..6191658,+p1@Ogdh
Mm9::chr11:6191967..6192000,+p7@Ogdh
Mm9::chr11:6192056..6192070,+p10@Ogdh
Mm9::chr11:6192087..6192114,+p9@Ogdh
Mm9::chr11:63892946..63892982,-p1@Cox10
Mm9::chr11:70460391..70460469,-p2@Slc25a11
Mm9::chr11:95936910..95936950,-p1@Atp5g1
Mm9::chr12:10397856..10397877,+p@chr12:10397856..10397877
+
Mm9::chr12:32036233..32036286,-p1@Dld
Mm9::chr12:85626286..85626364,+p1@Ptgr2
Mm9::chr12:85702979..85703006,+p1@Coq6
Mm9::chr12:86528796..86528812,-p@chr12:86528796..86528812
-
Mm9::chr12:87702062..87702081,+p4@Esrrb
Mm9::chr13:101514044..101514084,-p2@Mrps36
Mm9::chr13:108204822..108204844,-p2@Apoo
Mm9::chr13:115178265..115178297,-p1@Ndufs4
Mm9::chr13:24923278..24923387,-p1@Acot13
Mm9::chr13:30637123..30637215,-p1@Uqcrfs1
Mm9::chr13:67006258..67006306,-p1@Uqcrb
Mm9::chr13:73465890..73465915,-p1@Gm6415
p1@LOC631040
p1@Ndufs6
Mm9::chr13:74487654..74487695,-p1@Sdha
Mm9::chr13:86186377..86186405,-p1@Cox7c
p1@LOC100048613
Mm9::chr14:122580927..122580947,+p1@Clybl
Mm9::chr14:32898939..32898986,+p2@Oxnad1
Mm9::chr14:54980714..54980819,+p@chr14:54980714..54980819
+
Mm9::chr14:73952587..73952618,+p1@Sucla2
Mm9::chr15:35867941..35867958,-p2@Cox6c
p2@Gm6265
Mm9::chr15:58765329..58765391,+p1@Ndufb9
Mm9::chr15:76173934..76173988,+p1@Cyc1
Mm9::chr15:76174002..76174013,+p2@Cyc1
Mm9::chr15:81702900..81702944,+p1@Aco2
Mm9::chr15:97976056..97976098,-p1@Asb8
Mm9::chr16:37654494..37654536,-p1@Gm3244
p1@Gm3873
p1@Ndufb4
Mm9::chr16:38347072..38347136,+p1@Cox17
Mm9::chr16:42955703..42955721,+p1@BC002163
Mm9::chr16:84835093..84835119,-p1@Atp5j
Mm9::chr16:84835121..84835130,-p5@Atp5j
Mm9::chr17:13108868..13108910,-p2@Mrpl18
Mm9::chr17:13200790..13200820,+p2@Sod2
Mm9::chr17:13200821..13200854,+p1@Sod2
Mm9::chr17:13209602..13209606,+p@chr17:13209602..13209606
+
Mm9::chr17:17585824..17585848,+p3@Lix1
Mm9::chr17:24861319..24861400,-p1@Ndufb10
Mm9::chr17:24987027..24987063,-p2@Fahd1
Mm9::chr17:66450806..66450874,-p1@Ndufv2
Mm9::chr18:61560017..61560103,-p1@Ppargc1b
Mm9::chr18:61560117..61560124,-p3@Ppargc1b
Mm9::chr18:67608737..67608859,-p1@Afg3l2
Mm9::chr18:68459848..68459882,-p1@4933403F05Rik
Mm9::chr18:68459894..68459913,-p3@4933403F05Rik
Mm9::chr18:78012723..78012745,+p1@Atp5a1
Mm9::chr18:78017273..78017311,-p@chr18:78017273..78017311
-
Mm9::chr19:3912711..3912722,-p2@Ndufs8
Mm9::chr19:3912733..3912779,-p1@Ndufs8
Mm9::chr19:4012656..4012736,-p1@Ndufv1
Mm9::chr19:44629888..44629927,-p1@Ndufb8
Mm9::chr19:47165100..47165145,-p1@Gm14539
p1@LOC100504912
p1@Usmg5
Mm9::chr1:16655270..16655345,+p1@Tmem70
Mm9::chr1:173080723..173080740,-p1@Sdhc
Mm9::chr1:173177227..173177252,-p1@Ndufs2
Mm9::chr1:177555711..177555744,-p1@Fh1
Mm9::chr1:191651092..191651107,+p@chr1:191651092..191651107
+
Mm9::chr1:36748375..36748399,+p1@Cox5b
p1@LOC100046079
Mm9::chr1:58643435..58643469,+p1@Ndufb3
Mm9::chr1:63223227..63223281,-p1@Ndufs1
Mm9::chr1:94370313..94370376,-p1@Ndufa10
Mm9::chr1:94370378..94370385,-p2@Ndufa10
Mm9::chr1:95628538..95628549,-p@chr1:95628538..95628549
-
Mm9::chr2:10002032..10002073,-p1@Atp5c1
Mm9::chr2:102913606..102913649,-p1@Pdhx
Mm9::chr2:119488492..119488571,-p1@Ndufaf1
Mm9::chr2:127095944..127096007,+p1@Stard7
Mm9::chr2:130110158..130110187,-p1@Idh3b
Mm9::chr2:155207544..155207620,+p1@Trp53inp2
Mm9::chr2:155207922..155208010,+p2@Trp53inp2
Mm9::chr2:155208020..155208035,+p3@Trp53inp2
Mm9::chr2:155755774..155755802,-p1@Uqcc
Mm9::chr2:30027063..30027074,+p2@Endog
Mm9::chr2:30027077..30027084,+p6@Endog
Mm9::chr2:32251774..32251800,+p1@Ptges2
Mm9::chr2:35904797..35904877,-p1@Ndufa8
Mm9::chr2:90744806..90744884,-p1@Gm12251
p1@Ndufs3
Mm9::chr3:105762130..105762155,-p2@Atp5f1
Mm9::chr3:105762170..105762198,-p1@Atp5f1
Mm9::chr3:14802603..14802637,-p@chr3:14802603..14802637
-
Mm9::chr3:32428479..32428482,+p5@Mfn1
Mm9::chr3:32428560..32428565,+p6@Mfn1
Mm9::chr3:32635967..32636004,+p1@Ndufb5
Mm9::chr3:51212847..51212906,-p1@Ndufc1
Mm9::chr3:67234023..67234106,+p1@Gfm1
Mm9::chr4:115747605..115747622,-p2@Uqcrh
Mm9::chr4:116380917..116380961,-p1@Mmachc
Mm9::chr4:138686648..138686776,-p3@Minos1
Mm9::chr4:140517287..140517317,+p1@Sdhb
Mm9::chr4:147278789..147278819,-p1@Mfn2
Mm9::chr5:115729682..115729725,+p1@Coq5
Mm9::chr5:89104215..89104252,-p8@Grsf1
Mm9::chr6:11857419..11857484,-p1@Ndufa4
Mm9::chr6:125046762..125046791,+p5@Chd4
Mm9::chr6:126799127..126799159,-p1@Ndufa9
Mm9::chr6:142456430..142456482,-p1@Gm5514
p1@Ldhb
Mm9::chr6:146991277..146991319,+p1@Mrps35
Mm9::chr6:24477546..24477585,-p1@Ndufa5
Mm9::chr6:33010172..33010252,-p1@Chchd3
Mm9::chr6:52590264..52590275,-p3@Hibadh
Mm9::chr6:71781319..71781404,+p1@Immt
Mm9::chr6:83299445..83299490,+p1@Bola3
Mm9::chr7:104548635..104548646,+p2@LOC635087
p2@LOC675851
p2@Ndufc2
Mm9::chr7:125676812..125676847,-p1@Coq7
Mm9::chr7:127778714..127778765,+p1@Uqcrc2
Mm9::chr7:129245341..129245373,-p1@Gm4459
p1@Ndufab1
Mm9::chr7:147288225..147288256,-p2@1810014F10Rik
Mm9::chr7:30969179..30969200,+p2@Cox7a1
Mm9::chr7:3568959..3568991,+p1@Ndufa3
Mm9::chr7:71537606..71537617,+p3@Mcee
Mm9::chr7:97605677..97605723,-p1@Tmem126a
Mm9::chr7:98120937..98120952,+p@chr7:98120937..98120952
+
Mm9::chr8:109572060..109572072,-p1@ENSMUST00000055316
Mm9::chr8:123192212..123192218,+p2@Cox4i1
Mm9::chr8:23704207..23704248,-p1@Vdac3
Mm9::chr8:4275886..4275915,-p1@Timm44
Mm9::chr8:97362288..97362325,+p1@Coq9
Mm9::chr9:108838698..108838728,+p1@Uqcrc1
Mm9::chr9:21889835..21889887,-p1@Ecsit
Mm9::chr9:50411897..50411929,-p1@Sdhd
Mm9::chr9:50467569..50467582,-p2@Dlat
Mm9::chr9:50467598..50467669,-p1@Dlat
Mm9::chr9:54434257..54434319,+p1@Idh3a
Mm9::chr9:71333307..71333377,-p@chr9:71333307..71333377
-
Mm9::chr9:79607274..79607299,-p@chr9:79607274..79607299
-
Mm9::chrM:6037..6048,+p@chrM:6037..6048
+
Mm9::chrX:101577980..101577990,-p1@ENSMUST00000120999
Mm9::chrX:130811508..130811519,-p2@Trmt2b
Mm9::chrX:156576307..156576367,-p2@Pdha1
Mm9::chrX:20158460..20158497,-p1@ENSMUST00000096481
p1@ENSMUST00000117527
Mm9::chrX:34731099..34731143,-p1@Ndufa1
Mm9::chrX:91612451..91612473,+p1@Apoo-ps
p1@Apoo
Mm9::chrX:91612486..91612504,+p3@Apoo


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005739mitochondrion0
GO:0044444cytoplasmic part2.61788835452024e-67
GO:0044429mitochondrial part3.36030328987363e-57
GO:0005740mitochondrial envelope1.51463207020772e-55
GO:0031966mitochondrial membrane1.24437390119475e-53
GO:0005743mitochondrial inner membrane1.14228254629768e-51
GO:0019866organelle inner membrane5.64220649420731e-51
GO:0031975envelope8.47281734030686e-49
GO:0031967organelle envelope8.47281734030686e-49
GO:0006091generation of precursor metabolites and energy9.00073184167751e-41
GO:0031090organelle membrane3.54289745902054e-39
GO:0016491oxidoreductase activity4.48383168030395e-36
GO:0050136NADH dehydrogenase (quinone) activity1.33018494133354e-34
GO:0003954NADH dehydrogenase activity1.33018494133354e-34
GO:0008137NADH dehydrogenase (ubiquinone) activity1.33018494133354e-34
GO:0016655oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor6.92436621525659e-34
GO:0009055electron carrier activity1.8040596978225e-33
GO:0005737cytoplasm1.04706685514595e-32
GO:0016651oxidoreductase activity, acting on NADH or NADPH1.2371401540308e-30
GO:0044446intracellular organelle part9.6476279148819e-27
GO:0044422organelle part1.27923079143621e-26
GO:0043231intracellular membrane-bound organelle4.74769011391209e-26
GO:0043227membrane-bound organelle4.95544134932459e-26
GO:0006732coenzyme metabolic process4.58380190264035e-25
GO:0051186cofactor metabolic process6.34990305732226e-25
GO:0006118electron transport8.08653468632898e-25
GO:0006119oxidative phosphorylation3.2479969422486e-21
GO:0043229intracellular organelle1.15504917019063e-20
GO:0043226organelle1.19366204906274e-20
GO:0015078hydrogen ion transmembrane transporter activity2.0082859565728e-20
GO:0015077monovalent inorganic cation transmembrane transporter activity5.1556478651581e-20
GO:0044455mitochondrial membrane part1.93474716896835e-18
GO:0022890inorganic cation transmembrane transporter activity1.24627339230588e-17
GO:0005746mitochondrial respiratory chain3.25890807583544e-17
GO:0009060aerobic respiration1.55962993805231e-15
GO:0044424intracellular part2.38549590178456e-15
GO:0045333cellular respiration8.19293961093819e-15
GO:0006084acetyl-CoA metabolic process3.41819505559932e-14
GO:0005622intracellular3.57763374937361e-14
GO:0006099tricarboxylic acid cycle6.61987775190562e-14
GO:0051188cofactor biosynthetic process9.26755838821735e-14
GO:0046356acetyl-CoA catabolic process9.80581199112265e-14
GO:0045259proton-transporting ATP synthase complex4.09349456343497e-13
GO:0009108coenzyme biosynthetic process4.40473583649687e-13
GO:0009109coenzyme catabolic process4.40473583649687e-13
GO:0051187cofactor catabolic process1.19027187157452e-12
GO:0051536iron-sulfur cluster binding2.18021011694409e-11
GO:0051540metal cluster binding2.18021011694409e-11
GO:0015980energy derivation by oxidation of organic compounds3.68164785618554e-11
GO:0015985energy coupled proton transport, down electrochemical gradient5.86178898535249e-11
GO:0015986ATP synthesis coupled proton transport5.86178898535249e-11
GO:00515394 iron, 4 sulfur cluster binding7.4201616980596e-11
GO:0046933hydrogen ion transporting ATP synthase activity, rotational mechanism2.0376963011117e-10
GO:0006753nucleoside phosphate metabolic process2.0376963011117e-10
GO:0006754ATP biosynthetic process2.0376963011117e-10
GO:0046961hydrogen ion transporting ATPase activity, rotational mechanism2.49711207773685e-10
GO:0016469proton-transporting two-sector ATPase complex2.49711207773685e-10
GO:0022892substrate-specific transporter activity4.14875226537838e-10
GO:0050662coenzyme binding4.59080945228018e-10
GO:0046034ATP metabolic process4.66077437635941e-10
GO:0042775organelle ATP synthesis coupled electron transport1.19692435409226e-09
GO:0009201ribonucleoside triphosphate biosynthetic process1.19692435409226e-09
GO:0009145purine nucleoside triphosphate biosynthetic process1.19692435409226e-09
GO:0009206purine ribonucleoside triphosphate biosynthetic process1.19692435409226e-09
GO:0019829cation-transporting ATPase activity1.70355131649782e-09
GO:0009142nucleoside triphosphate biosynthetic process2.00407109858255e-09
GO:0009205purine ribonucleoside triphosphate metabolic process2.34856042847132e-09
GO:0042773ATP synthesis coupled electron transport2.66249077794621e-09
GO:0009199ribonucleoside triphosphate metabolic process2.7024361615929e-09
GO:0009144purine nucleoside triphosphate metabolic process3.14496281097123e-09
GO:0015992proton transport4.27645484162325e-09
GO:0008324cation transmembrane transporter activity4.74664861440634e-09
GO:0006752group transfer coenzyme metabolic process4.86029544383732e-09
GO:0009141nucleoside triphosphate metabolic process6.48604892276589e-09
GO:0009152purine ribonucleotide biosynthetic process7.41031857017018e-09
GO:0006818hydrogen transport8.44403427106906e-09
GO:0044262cellular carbohydrate metabolic process9.56925540335351e-09
GO:0015075ion transmembrane transporter activity1.01314616001425e-08
GO:0009260ribonucleotide biosynthetic process1.23095640143998e-08
GO:0022891substrate-specific transmembrane transporter activity1.56763479701084e-08
GO:0016681oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor1.56763479701084e-08
GO:0008121ubiquinol-cytochrome-c reductase activity1.56763479701084e-08
GO:0016679oxidoreductase activity, acting on diphenols and related substances as donors1.56763479701084e-08
GO:0009150purine ribonucleotide metabolic process1.71625132863007e-08
GO:0048037cofactor binding1.72242471302583e-08
GO:0006164purine nucleotide biosynthetic process1.90286432767878e-08
GO:0009259ribonucleotide metabolic process3.43832857159729e-08
GO:0006163purine nucleotide metabolic process5.32822628871068e-08
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)8.99957511242308e-08
GO:0042625ATPase activity, coupled to transmembrane movement of ions1.07670288735607e-07
GO:0022857transmembrane transporter activity1.68291375742624e-07
GO:0005747mitochondrial respiratory chain complex I1.95882614834715e-07
GO:0030964NADH dehydrogenase complex (quinone)1.95882614834715e-07
GO:0033178proton-transporting two-sector ATPase complex, catalytic domain1.95882614834715e-07
GO:0045271respiratory chain complex I1.95882614834715e-07
GO:0015399primary active transmembrane transporter activity2.46697264632497e-07
GO:0015405P-P-bond-hydrolysis-driven transmembrane transporter activity2.46697264632497e-07
GO:0006743ubiquinone metabolic process3.74321912743011e-07
GO:0006744ubiquinone biosynthetic process3.74321912743011e-07
GO:0005975carbohydrate metabolic process4.04799461188254e-07
GO:0005506iron ion binding5.25275970302313e-07
GO:0045426quinone cofactor biosynthetic process6.51154406877363e-07
GO:0016310phosphorylation7.98568870964877e-07
GO:0042626ATPase activity, coupled to transmembrane movement of substances1.45213344380282e-06
GO:0043492ATPase activity, coupled to movement of substances1.45213344380282e-06
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1.53791767819594e-06
GO:0042375quinone cofactor metabolic process1.59686044703171e-06
GO:0006120mitochondrial electron transport, NADH to ubiquinone1.59686044703171e-06
GO:0009165nucleotide biosynthetic process2.20528242980027e-06
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)2.32055018131361e-06
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain2.32055018131361e-06
GO:0044248cellular catabolic process2.32193909608768e-06
GO:0009117nucleotide metabolic process4.08702209337866e-06
GO:00515372 iron, 2 sulfur cluster binding4.49318428143087e-06
GO:0006733oxidoreduction coenzyme metabolic process4.49318428143087e-06
GO:0009056catabolic process6.73125895278602e-06
GO:0055086nucleobase, nucleoside and nucleotide metabolic process7.03749742685314e-06
GO:0006793phosphorus metabolic process7.19440717244674e-06
GO:0006796phosphate metabolic process7.19440717244674e-06
GO:0005741mitochondrial outer membrane1.63095566346544e-05
GO:0016676oxidoreductase activity, acting on heme group of donors, oxygen as acceptor2.41629733971726e-05
GO:0015002heme-copper terminal oxidase activity2.41629733971726e-05
GO:0004129cytochrome-c oxidase activity2.41629733971726e-05
GO:0016675oxidoreductase activity, acting on heme group of donors2.41629733971726e-05
GO:0051287NAD binding2.89391795470472e-05
GO:0031968organelle outer membrane2.89391795470472e-05
GO:0017111nucleoside-triphosphatase activity3.33603475559725e-05
GO:0016462pyrophosphatase activity5.48407457321766e-05
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides5.79895383633392e-05
GO:0016817hydrolase activity, acting on acid anhydrides5.87701226547194e-05
GO:0044249cellular biosynthetic process7.38470048586894e-05
GO:0045254pyruvate dehydrogenase complex0.000134227245845942
GO:0008177succinate dehydrogenase (ubiquinone) activity0.000134227245845942
GO:0016635oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor0.000134227245845942
GO:0005967mitochondrial pyruvate dehydrogenase complex0.000134227245845942
GO:0042623ATPase activity, coupled0.000164501685140424
GO:0022804active transmembrane transporter activity0.000288734399258458
GO:0016887ATPase activity0.000454386067530546
GO:0019867outer membrane0.000520487583341562
GO:0009058biosynthetic process0.000708777423828714
GO:0008053mitochondrial fusion0.000734227192761206
GO:0006122mitochondrial electron transport, ubiquinol to cytochrome c0.000734227192761206
GO:0004449isocitrate dehydrogenase (NAD+) activity0.000734227192761206
GO:0015672monovalent inorganic cation transport0.000795448745612154
GO:0046365monosaccharide catabolic process0.000840360523092207
GO:0019320hexose catabolic process0.000840360523092207
GO:0006007glucose catabolic process0.000840360523092207
GO:0032991macromolecular complex0.000840360523092207
GO:0044464cell part0.000875512664337413
GO:0005623cell0.000875512664337413
GO:0046164alcohol catabolic process0.00101451093134127
GO:0031406carboxylic acid binding0.00112722723437979
GO:0031405lipoic acid binding0.00112722723437979
GO:0008308voltage-gated ion-selective channel activity0.00112722723437979
GO:0048284organelle fusion0.00165347470537244
GO:0043234protein complex0.00180037310293277
GO:0044275cellular carbohydrate catabolic process0.00181445020309983
GO:0007005mitochondrion organization and biogenesis0.00190979049878572
GO:0051234establishment of localization0.0020632571923969
GO:0016624oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor0.00222405080626224
GO:0004448isocitrate dehydrogenase activity0.00222405080626224
GO:0016020membrane0.00242490849746545
GO:0016052carbohydrate catabolic process0.00243547339463746
GO:0006810transport0.00356432971516869
GO:0006812cation transport0.0036745247696321
GO:0046914transition metal ion binding0.00404364743516769
GO:0002209behavioral defense response0.00452536174272432
GO:0001662behavioral fear response0.00452536174272432
GO:0044237cellular metabolic process0.00534965611527592
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors0.00546593497181818
GO:0006811ion transport0.00546811612593621
GO:0006096glycolysis0.00660071227009076
GO:0006006glucose metabolic process0.00692626309555515
GO:0006100tricarboxylic acid cycle intermediate metabolic process0.00986137050232173
GO:0042596fear response0.00986137050232173
GO:0005759mitochondrial matrix0.0101560586088035
GO:0031980mitochondrial lumen0.0101560586088035
GO:0050660FAD binding0.0136843247458712
GO:0051179localization0.0154464140813244
GO:0030523dihydrolipoamide S-acyltransferase activity0.0154464140813244
GO:00084423-hydroxyisobutyrate dehydrogenase activity0.0154464140813244
GO:0006106fumarate metabolic process0.0154464140813244
GO:0004742dihydrolipoyllysine-residue acetyltransferase activity0.0154464140813244
GO:0004333fumarate hydratase activity0.0154464140813244
GO:0006784heme a biosynthetic process0.0154464140813244
GO:0017004cytochrome complex assembly0.0154464140813244
GO:0009346citrate lyase complex0.0154464140813244
GO:0004493methylmalonyl-CoA epimerase activity0.0154464140813244
GO:0006573valine metabolic process0.0154464140813244
GO:0004148dihydrolipoyl dehydrogenase activity0.0154464140813244
GO:0042806fucose binding0.0154464140813244
GO:0045275respiratory chain complex III0.0154464140813244
GO:0050164oxoglutarate dehydrogenase (NADP+) activity0.0154464140813244
GO:0008815citrate (pro-3S)-lyase activity0.0154464140813244
GO:0008383manganese superoxide dismutase activity0.0154464140813244
GO:0048873homeostasis of number of cells within a tissue0.0154464140813244
GO:0046160heme a metabolic process0.0154464140813244
GO:0000266mitochondrial fission0.0154464140813244
GO:0018347protein amino acid farnesylation0.0154464140813244
GO:0000104succinate dehydrogenase activity0.0154464140813244
GO:0008495protoheme IX farnesyltransferase activity0.0154464140813244
GO:0019318hexose metabolic process0.0167775297002076
GO:0005996monosaccharide metabolic process0.0185613900784989
GO:0007270nerve-nerve synaptic transmission0.0212722827198513
GO:0046872metal ion binding0.0226213863525267
GO:0033555multicellular organismal response to stress0.0226213863525267
GO:0001707mesoderm formation0.0226213863525267
GO:0048332mesoderm morphogenesis0.0243078635364129
GO:0001704formation of primary germ layer0.0260402712013992
GO:0016853isomerase activity0.0273596722164131
GO:0006101citrate metabolic process0.0279109354371468
GO:0018343protein farnesylation0.0279109354371468
GO:0016531copper chaperone activity0.0279109354371468
GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity0.0279109354371468
GO:0016530metallochaperone activity0.0279109354371468
GO:0045239tricarboxylic acid cycle enzyme complex0.0279109354371468
GO:00515383 iron, 4 sulfur cluster binding0.0279109354371468
GO:0003994aconitate hydratase activity0.0279109354371468
GO:0016418S-acetyltransferase activity0.0279109354371468
GO:0004691cAMP-dependent protein kinase activity0.0279109354371468
GO:0043167ion binding0.0300364259608004
GO:0000166nucleotide binding0.0393937766415395
GO:0005615extracellular space0.0393937766415395
GO:0004739pyruvate dehydrogenase (acetyl-transferring) activity0.0393937766415395
GO:0004616phosphogluconate dehydrogenase (decarboxylating) activity0.0393937766415395
GO:0016833oxo-acid-lyase activity0.0393937766415395
GO:0006086acetyl-CoA biosynthetic process from pyruvate0.0393937766415395
GO:0030976thiamin pyrophosphate binding0.0393937766415395
GO:0004774succinate-CoA ligase activity0.0393937766415395
GO:0004738pyruvate dehydrogenase activity0.0393937766415395
GO:0005753mitochondrial proton-transporting ATP synthase complex0.0393937766415395
GO:0050220prostaglandin-E synthase activity0.0393937766415395
GO:0016903oxidoreductase activity, acting on the aldehyde or oxo group of donors0.0445312826789741
GO:0004222metalloendopeptidase activity0.0489760291934656



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
epithelial tube3.86e-0947
primary circulatory organ3.76e-0818
heart3.76e-0818
primitive heart tube3.76e-0818
primary heart field3.76e-0818
anterior lateral plate mesoderm3.76e-0818
heart tube3.76e-0818
heart primordium3.76e-0818
cardiac mesoderm3.76e-0818
cardiogenic plate3.76e-0818
heart rudiment3.76e-0818
compound organ1.24e-0743


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.74817
MA0004.10.393689
MA0006.12.79477
MA0007.10.146864
MA0009.10.270451
MA0014.12.59597
MA0017.10.658941
MA0019.10.184683
MA0024.11.38047
MA0025.10.32302
MA0027.11.23966
MA0028.112.097
MA0029.10.0733785
MA0030.10.0767938
MA0031.10.159053
MA0038.10.593774
MA0040.10.120162
MA0041.12.26484
MA0042.11.08964
MA0043.12.09975
MA0046.10.136843
MA0048.11.91946
MA0050.10.0919594
MA0051.10.275816
MA0052.10.125768
MA0055.10.00178924
MA0056.10
MA0057.10.0567671
MA0058.10.390595
MA0059.10.446751
MA0060.14.77918
MA0061.10.49544
MA0063.10
MA0066.11.61595
MA0067.10.45914
MA0068.17.47348e-05
MA0069.10.549649
MA0070.10.028762
MA0071.10.729483
MA0072.10.113557
MA0073.10
MA0074.10.0926002
MA0076.111.0072
MA0077.10.0996741
MA0078.10.349911
MA0081.10.0794361
MA0083.10.0493244
MA0084.10.363358
MA0087.10.623188
MA0088.11.48116
MA0089.10
MA0090.10.185962
MA0091.10.0123256
MA0092.10.0652707
MA0093.10.473571
MA0095.10
MA0098.10
MA0100.10.15387
MA0101.11.71289
MA0103.10.114046
MA0105.10.221259
MA0106.10.793713
MA0107.10.692346
MA0108.20.101042
MA0109.10
MA0111.10.13797
MA0113.10.67721
MA0114.11.03221
MA0115.10.188179
MA0116.10.371038
MA0117.11.02196
MA0119.10.258776
MA0122.10.399359
MA0124.10.123862
MA0125.10.631929
MA0130.10
MA0131.12.59706
MA0132.10
MA0133.10
MA0135.10.0606007
MA0136.10.69545
MA0139.11.77269
MA0140.10.081497
MA0141.17.84548
MA0142.10.0531216
MA0143.10.0427016
MA0144.10.395669
MA0145.11.05896
MA0146.11.81269
MA0147.10.876748
MA0148.10.0692092
MA0149.17.77943e-06
MA0062.213.0192
MA0035.20.0858575
MA0039.22.2454
MA0138.20.732865
MA0002.20.0235168
MA0137.20.868615
MA0104.20.990922
MA0047.20.14544
MA0112.24.6692
MA0065.20.475823
MA0150.10.231307
MA0151.10
MA0152.10.0277449
MA0153.10.234737
MA0154.10.0187298
MA0155.10.434485
MA0156.12.13895
MA0157.10.242752
MA0158.10
MA0159.10.674433
MA0160.12.19953
MA0161.10
MA0162.10.598359
MA0163.10.0322726
MA0164.10.334057
MA0080.20.427609
MA0018.23.5405
MA0099.20.0231407
MA0079.20.00294045
MA0102.21.04144
MA0258.11.58779
MA0259.12.38202
MA0442.10
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