FFCP PHASE1:Hg19::chr2:149895005..149895022,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:149895005..149895022,+
|short_description=p6@LYPD6B
|description=CAGE_peak_6_at_LYPD6B_5end
|association_with_transcript=24bp_to_ENST00000409642,NM_177964,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=130576 | |EntrezGene=130576 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27018 | |HGNC=27018 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NI32 | |UniProt=Q8NI32 | ||
|association_with_transcript=24bp_to_ENST00000409642,NM_177964,uc002twv.1,uc002tww.1_5end | |||
|cluster_id=chr2:149895005..149895022,+ | |||
|coexpression_cluster_id=C2660 | |||
|description=CAGE_peak_6_at_LYPD6B_5end | |||
|id=chr2:149895005..149895022,+ | |||
|ontology_enrichment_celltype=CL:0002620!4.16e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0000197;1.28e-19;6!CL:0000098;1.28e-19;6!CL:0002167;1.28e-19;6!CL:0000075;6.14e-12;27!CL:0002586;2.25e-10;3!CL:0000346;3.75e-10;3!CL:1000428;3.75e-10;3!CL:0000710;8.94e-09;20!CL:0000222;1.09e-08;1!CL:0002174;4.56e-08;1!CL:0000342;4.56e-08;1!CL:0002565;4.56e-08;1!CL:0000501;4.56e-08;1!CL:0000149;5.44e-08;4!CL:0000306;1.16e-07;4!CL:0002222;1.16e-07;4!CL:0002224;1.16e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000197,1.28e-19,6;CL:0000098,1.28e-19,6;CL:0002167,1.28e-19,6;CL:0000075,6.20e-12,27;CL:0002586,2.36e-10,3;CL:0000346,3.75e-10,3;CL:1000428,3.75e-10,3;CL:0000710,8.30e-09,20;CL:0000342,2.89e-08,1;CL:0002565,2.89e-08,1;CL:0002174,5.43e-08,1;CL:0000501,5.43e-08,1;CL:0000149,5.64e-08,4;CL:0000306,1.37e-07,4;CL:0002222,1.37e-07,4;CL:0002224,1.37e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2513;1.41e-08;1!DOID:630;4.56e-08;1!DOID:0050177;4.56e-08;1!DOID:0050427;4.56e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,1.41e-08,1;DOID:630,3.57e-08,1;DOID:0050177,3.57e-08,1;DOID:0050427,3.57e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007625!2.10e-12!11;UBERON:0003056!4.72e-10!61;UBERON:0000475!1.82e-08!365;UBERON:0002619!3.41e-08!22;UBERON:0000970!4.81e-08!20;UBERON:0002097!6.67e-08!40;UBERON:0003075!1.29e-07!86;UBERON:0007284!1.29e-07!86;UBERON:0002104!1.70e-07!21;UBERON:0000019!2.45e-07!19;UBERON:0000047!2.45e-07!19;UBERON:0004088!2.45e-07!19;UBERON:0003072!2.45e-07!19;UBERON:0003071!2.45e-07!19;UBERON:0004128!2.45e-07!19;UBERON:0002346!6.69e-07!90;UBERON:0000956!8.27e-07!25;UBERON:0000203!8.27e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;7.33e-22;11!UBERON:0010371;7.35e-13;31!UBERON:0000019;1.83e-12;19!UBERON:0000047;1.83e-12;19!UBERON:0004088;1.83e-12;19!UBERON:0010230;1.83e-12;19!UBERON:0000970;8.13e-12;20!UBERON:0002104;3.14e-11;21!UBERON:0001456;3.14e-11;21!UBERON:0001781;2.25e-10;3!UBERON:0001782;2.25e-10;3!UBERON:0000020;3.29e-10;23!UBERON:0000412;3.75e-10;3!UBERON:0001992;3.75e-10;3!UBERON:0001032;9.19e-10;24!UBERON:0004456;9.19e-10;24!UBERON:0002506;4.56e-08;1!UBERON:0001769;4.56e-08;1!UBERON:0001801;6.99e-08;14!UBERON:0010077;1.16e-07;4!UBERON:0005389;1.16e-07;4!UBERON:0000488;1.16e-07;4!UBERON:0000484;1.16e-07;4!UBERON:0000965;1.16e-07;4!UBERON:0001803;1.16e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,6.10e-22,11;UBERON:0005085,4.84e-13,31;UBERON:0000019,7.38e-12,20;UBERON:0000047,7.38e-12,20;UBERON:0010312,7.38e-12,20;UBERON:0004088,7.38e-12,20;UBERON:0010230,7.38e-12,20;UBERON:0003072,7.38e-12,20;UBERON:0004128,7.38e-12,20;UBERON:0003071,7.38e-12,20;UBERON:0000970,2.86e-11,21;UBERON:0002104,2.86e-11,21;UBERON:0001456,9.81e-11,22;UBERON:0001782,2.36e-10,3;UBERON:0005424,2.36e-10,3;UBERON:0000412,3.75e-10,3;UBERON:0001992,3.75e-10,3;UBERON:0000020,8.48e-10,24;UBERON:0001032,8.48e-10,24;UBERON:0004456,8.48e-10,24;UBERON:0002506,2.89e-08,1;UBERON:0001769,2.89e-08,1;UBERON:0001781,5.64e-08,4;UBERON:0001801,6.26e-08,14;UBERON:0000488,7.97e-08,4;UBERON:0010077,1.37e-07,4;UBERON:0005389,1.37e-07,4;UBERON:0000484,1.37e-07,4;UBERON:0002546,1.37e-07,4;UBERON:0000965,1.37e-07,4;UBERON:0001803,1.37e-07,4;UBERON:0003073,1.37e-07,4;UBERON:0005426,1.37e-07,4 | |||
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| ||
|short_description=p6@LYPD6B | |||
}} | }} |
Latest revision as of 10:37, 17 September 2015
Short description: | p6@LYPD6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LYPD6B_5end |
Coexpression cluster: | C2660_Olfactory_mesodermal_mesenchymal_Retinal_glioblastoma_Fibroblast_basal |
Association with transcript: | 24bp_to_ENST00000409642, NM_177964, uc002twv.1, uc002tww.1_5end |
EntrezGene: | LYPD6B |
HGNC: | 27018 |
UniProt: | Q8NI32 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
receptor cell | 1.28e-19 | 6 |
sensory epithelial cell | 1.28e-19 | 6 |
olfactory epithelial cell | 1.28e-19 | 6 |
columnar/cuboidal epithelial cell | 6.20e-12 | 27 |
retinal pigment epithelial cell | 2.36e-10 | 3 |
hair follicle dermal papilla cell | 3.75e-10 | 3 |
stem cell of epidermis | 3.75e-10 | 3 |
neurecto-epithelial cell | 8.30e-09 | 20 |
pigment cell (sensu Vertebrata) | 2.89e-08 | 1 |
iris pigment epithelial cell | 2.89e-08 | 1 |
follicular cell of ovary | 5.43e-08 | 1 |
granulosa cell | 5.43e-08 | 1 |
visual pigment cell | 5.64e-08 | 4 |
crystallin accumulating cell | 1.37e-07 | 4 |
vertebrate lens cell | 1.37e-07 | 4 |
lens epithelial cell | 1.37e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 6.10e-22 | 11 |
ectodermal placode | 4.84e-13 | 31 |
camera-type eye | 7.38e-12 | 20 |
simple eye | 7.38e-12 | 20 |
immature eye | 7.38e-12 | 20 |
ocular region | 7.38e-12 | 20 |
eyeball of camera-type eye | 7.38e-12 | 20 |
optic cup | 7.38e-12 | 20 |
optic vesicle | 7.38e-12 | 20 |
eye primordium | 7.38e-12 | 20 |
eye | 2.86e-11 | 21 |
visual system | 2.86e-11 | 21 |
face | 9.81e-11 | 22 |
pigmented layer of retina | 2.36e-10 | 3 |
presumptive retinal pigmented epithelium | 2.36e-10 | 3 |
dermal papilla | 3.75e-10 | 3 |
papillary layer of dermis | 3.75e-10 | 3 |
sense organ | 8.48e-10 | 24 |
sensory system | 8.48e-10 | 24 |
entire sense organ system | 8.48e-10 | 24 |
iris epithelium | 2.89e-08 | 1 |
iris | 2.89e-08 | 1 |
layer of retina | 5.64e-08 | 4 |
anterior segment of eyeball | 6.26e-08 | 14 |
atypical epithelium | 7.97e-08 | 4 |
cuboidal epithelium | 1.37e-07 | 4 |
transparent eye structure | 1.37e-07 | 4 |
simple cuboidal epithelium | 1.37e-07 | 4 |
cranial placode | 1.37e-07 | 4 |
lens of camera-type eye | 1.37e-07 | 4 |
epithelium of lens | 1.37e-07 | 4 |
lens placode | 1.37e-07 | 4 |
lens vesicle | 1.37e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 1.41e-08 | 1 |
genetic disease | 3.57e-08 | 1 |
monogenic disease | 3.57e-08 | 1 |
xeroderma pigmentosum | 3.57e-08 | 1 |