FFCP PHASE1:Mm9::chr1:174128350..174128367,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=176 | |MCL_coexpression_id=176 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:174128350..174128367,+ | |||
|description=CAGE_peak_at_chr1:174128350..174128367,+ | |description=CAGE_peak_at_chr1:174128350..174128367,+ | ||
|id=chr1:174128350..174128367,+ | |id=chr1:174128350..174128367,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.08e-16!50;CL:0000221!1.11e-15!44;CL:0000133!1.11e-15!44;CL:0002319!2.50e-15!43;CL:0000117!1.06e-13!23;CL:0000337!1.06e-13!23;CL:0000393!8.10e-10!39;CL:0000211!8.10e-10!39;CL:0002321!1.09e-09!70;CL:0000220!1.09e-09!70;CL:0000333!2.48e-09!10;CL:0000095!2.48e-09!10;CL:0000243!2.48e-09!10;CL:0000123!2.48e-09!10;CL:0000125!2.48e-09!10;CL:0000030!2.48e-09!10;CL:0000339!2.48e-09!10;CL:0000540!2.06e-08!33;CL:0000047!2.06e-08!33;CL:0000031!2.06e-08!33;CL:0000404!2.06e-08!33;CL:0002453!1.58e-07!8 | |ontology_enrichment_celltype=CL:0000055!3.08e-16!50;CL:0000221!1.11e-15!44;CL:0000133!1.11e-15!44;CL:0002319!2.50e-15!43;CL:0000117!1.06e-13!23;CL:0000337!1.06e-13!23;CL:0000393!8.10e-10!39;CL:0000211!8.10e-10!39;CL:0002321!1.09e-09!70;CL:0000220!1.09e-09!70;CL:0000333!2.48e-09!10;CL:0000095!2.48e-09!10;CL:0000243!2.48e-09!10;CL:0000123!2.48e-09!10;CL:0000125!2.48e-09!10;CL:0000030!2.48e-09!10;CL:0000339!2.48e-09!10;CL:0000540!2.06e-08!33;CL:0000047!2.06e-08!33;CL:0000031!2.06e-08!33;CL:0000404!2.06e-08!33;CL:0002453!1.58e-07!8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000333,1.60e-40,10;CL:0000095,1.60e-40,10;CL:0000243,1.60e-40,10;CL:0000123,1.60e-40,10;CL:0000125,1.60e-40,10;CL:0000030,1.60e-40,10;CL:0000339,1.60e-40,10;CL:0002453,2.76e-39,8;CL:0000128,4.56e-27,6;CL:0000126,4.56e-27,6;CL:0000127,4.56e-27,6;CL:0002319,1.52e-23,43;CL:0000221,5.56e-23,44;CL:0000133,5.56e-23,44;CL:0000878,4.53e-14,2;CL:0000129,4.53e-14,2;CL:0002321,5.90e-14,70;CL:0002605,7.05e-14,2;CL:0002604,7.05e-14,2;CL:0002614,5.62e-09,3;CL:0000219,1.00e-08,54;CL:0002194,1.78e-07,4;CL:0000766,1.78e-07,4;CL:0000234,1.78e-07,4;CL:0000576,1.78e-07,4;CL:0000235,1.78e-07,4;CL:0000864,1.78e-07,4;CL:0002009,1.78e-07,4;CL:0000040,1.78e-07,4;CL:0000559,1.78e-07,4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.65e-15!75;UBERON:0001016!1.65e-15!75;UBERON:0001017!4.71e-14!73;UBERON:0005743!4.71e-14!73;UBERON:0004121!8.65e-12!102;UBERON:0000924!8.65e-12!102;UBERON:0006601!8.65e-12!102;UBERON:0001049!1.49e-11!52;UBERON:0005068!1.49e-11!52;UBERON:0006241!1.49e-11!52;UBERON:0007135!1.49e-11!52;UBERON:0002346!3.39e-10!71;UBERON:0003075!3.39e-10!71;UBERON:0007284!3.39e-10!71;UBERON:0002616!4.06e-10!49;UBERON:0000955!1.01e-09!50;UBERON:0006238!1.01e-09!50;UBERON:0000033!1.33e-09!63;UBERON:0002020!6.71e-08!34;UBERON:0003056!2.10e-07!49;UBERON:0004111!3.61e-07!122;UBERON:0000025!4.02e-07!114;UBERON:0003080!8.15e-07!40 | |ontology_enrichment_uberon=UBERON:0000073!1.65e-15!75;UBERON:0001016!1.65e-15!75;UBERON:0001017!4.71e-14!73;UBERON:0005743!4.71e-14!73;UBERON:0004121!8.65e-12!102;UBERON:0000924!8.65e-12!102;UBERON:0006601!8.65e-12!102;UBERON:0001049!1.49e-11!52;UBERON:0005068!1.49e-11!52;UBERON:0006241!1.49e-11!52;UBERON:0007135!1.49e-11!52;UBERON:0002346!3.39e-10!71;UBERON:0003075!3.39e-10!71;UBERON:0007284!3.39e-10!71;UBERON:0002616!4.06e-10!49;UBERON:0000955!1.01e-09!50;UBERON:0006238!1.01e-09!50;UBERON:0000033!1.33e-09!63;UBERON:0002020!6.71e-08!34;UBERON:0003056!2.10e-07!49;UBERON:0004111!3.61e-07!122;UBERON:0000025!4.02e-07!114;UBERON:0003080!8.15e-07!40 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.22e-13,75;UBERON:0001017,3.06e-11,73;UBERON:0004121,6.62e-10,95;UBERON:0000924,6.62e-10,95;UBERON:0006601,6.62e-10,95;UBERON:0002038,5.62e-09,3;UBERON:0009663,5.62e-09,3;UBERON:0009661,5.62e-09,3;UBERON:0000125,5.62e-09,3;UBERON:0002308,5.62e-09,3;UBERON:0001954,6.66e-09,7;UBERON:0003022,6.66e-09,7;UBERON:0002421,6.66e-09,7;UBERON:0000349,6.66e-09,7;UBERON:0002600,6.66e-09,7;UBERON:0002950,6.02e-07,4;UBERON:0001891,6.02e-07,4;UBERON:0009616,6.02e-07,4;UBERON:0010286,6.02e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,0.140788722151667,0,0,0,0,0.34968160967599,0,0,0,0,0,0,0.17008658030214,0,0,0,0.22940928106717,0,0.430761996159075,0,0,0,0.221730510655305,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0.629484089877886,0.202753862439029,0.367093504323363,0,9.59310688073965,4.83309602015838,3.88859798148567,2.09979632438044,5.75010257459886,0,0,0,0,0.573066879877513,0,0.404632921719196,0,0.633831403506179,0.338844532069132,0,1.7997994345628,0.988866362566974,0,4.49400165777607,7.68436610643109,0.518448061542388,0.270011876663381,0,1.71390590642282,0.441737081903227,0.367472397644862,0.383381884072945,4.5960939330501,1.10115880999389,0.510749352340751,0.614426133024974,0.131886287730194,0.457438218012048,0.52091337055676,1.11673199600552,0,1.37518422999129,0.589257170947335,0.854230084794618,0.186399445825301,1.66597625333005,0.529000920747499,0.579728977403356,0,0,0,0,0,0.140444420131752,0.170430322578058,0.519572009205738,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.449371918214468,0,0,0.347648640384553,0.255715457330331,0.41557608911912,0.162241263067758,0.101839363850316,0.124406970610093,0,0,0.130120442962704,0.459804208866946,0,0.452114453507145,0.0680364991513279,0,0.187403449119458,0,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0,0,0.36012412292203,0,0.590292695242212,0.308534225774757,0,0.536546802799238,0,0,0,0,0,0.219550115291051,0,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0,0.162964976442026,0,0,0.167506257441816,0,0.195133647857799,0,0,0,0.163863314715738,0,0.289298117163023,0,0,0,0,0.481651769963376,0.35163505977661,0,0.252470927204373,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485561272309963,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0,0,0.177340233642274,0.356737635204141,0,0.304464949114599,0,0,0.220528398054962,0,0,0,0,0,0,0.18542530201051,0,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0.209088296014469,0.436725127492355,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0.234714477291508,0,0.104859344425711,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0.386379188064381,0.187682475451182,0,0,0,0,0,0,0.171853182343688,0.685082519770642,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0.188626341386076,0.0936415074698824,0,0.0574354689556133,0,0.115884325944855,0,0,0.294397840268795,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0.409231043169689,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0.258246646883153,0.140788722151667,0,0,0,0,0.34968160967599,0,0,0,0,0,0,0.17008658030214,0,0,0,0.22940928106717,0,0.430761996159075,0,0,0,0.221730510655305,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0.629484089877886,0.202753862439029,0.367093504323363,0,9.59310688073965,4.83309602015838,3.88859798148567,2.09979632438044,5.75010257459886,0,0,0,0,0.573066879877513,0,0.404632921719196,0,0.633831403506179,0.338844532069132,0,1.7997994345628,0.988866362566974,0,4.49400165777607,7.68436610643109,0.518448061542388,0.270011876663381,0,1.71390590642282,0.441737081903227,0.367472397644862,0.383381884072945,4.5960939330501,1.10115880999389,0.510749352340751,0.614426133024974,0.131886287730194,0.457438218012048,0.52091337055676,1.11673199600552,0,1.37518422999129,0.589257170947335,0.854230084794618,0.186399445825301,1.66597625333005,0.529000920747499,0.579728977403356,0,0,0,0,0,0.140444420131752,0.170430322578058,0.519572009205738,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.449371918214468,0,0,0.347648640384553,0.255715457330331,0.41557608911912,0.162241263067758,0.101839363850316,0.124406970610093,0,0,0.130120442962704,0.459804208866946,0,0.452114453507145,0.0680364991513279,0,0.187403449119458,0,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0,0,0.36012412292203,0,0.590292695242212,0.308534225774757,0,0.536546802799238,0,0,0,0,0,0.219550115291051,0,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0,0.162964976442026,0,0,0.167506257441816,0,0.195133647857799,0,0,0,0.163863314715738,0,0.289298117163023,0,0,0,0,0.481651769963376,0.35163505977661,0,0.252470927204373,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485561272309963,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0,0,0.177340233642274,0.356737635204141,0,0.304464949114599,0,0,0.220528398054962,0,0,0,0,0,0,0.18542530201051,0,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0.209088296014469,0.436725127492355,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0.234714477291508,0,0.104859344425711,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0.386379188064381,0.187682475451182,0,0,0,0,0,0,0.171853182343688,0.685082519770642,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0.188626341386076,0.0936415074698824,0,0.0574354689556133,0,0.115884325944855,0,0,0.294397840268795,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0.409231043169689,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:174128350..174128367,+ | |short_description=p@chr1:174128350..174128367,+ | ||
}} | }} |
Latest revision as of 07:14, 5 August 2015
Short description: | p@chr1:174128350..174128367, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:174128350..174128367, + |
Coexpression cluster: | MCL_coexpression_mm9:176 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 1.60e-40 | 10 |
neuron associated cell | 1.60e-40 | 10 |
glial cell (sensu Vertebrata) | 1.60e-40 | 10 |
neuron associated cell (sensu Vertebrata) | 1.60e-40 | 10 |
glial cell | 1.60e-40 | 10 |
glioblast | 1.60e-40 | 10 |
glioblast (sensu Vertebrata) | 1.60e-40 | 10 |
oligodendrocyte precursor cell | 2.76e-39 | 8 |
oligodendrocyte | 4.56e-27 | 6 |
macroglial cell | 4.56e-27 | 6 |
astrocyte | 4.56e-27 | 6 |
neural cell | 1.52e-23 | 43 |
ectodermal cell | 5.56e-23 | 44 |
neurectodermal cell | 5.56e-23 | 44 |
central nervous system macrophage | 4.53e-14 | 2 |
microglial cell | 4.53e-14 | 2 |
embryonic cell | 5.90e-14 | 70 |
astrocyte of the cerebral cortex | 7.05e-14 | 2 |
astrocyte of the hippocampus | 7.05e-14 | 2 |
neuron of the substantia nigra | 5.62e-09 | 3 |
motile cell | 1.00e-08 | 54 |
monopoietic cell | 1.78e-07 | 4 |
myeloid leukocyte | 1.78e-07 | 4 |
phagocyte | 1.78e-07 | 4 |
monocyte | 1.78e-07 | 4 |
macrophage | 1.78e-07 | 4 |
tissue-resident macrophage | 1.78e-07 | 4 |
macrophage dendritic cell progenitor | 1.78e-07 | 4 |
monoblast | 1.78e-07 | 4 |
promonocyte | 1.78e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.22e-13 | 75 |
central nervous system | 3.06e-11 | 73 |
ectoderm-derived structure | 6.62e-10 | 95 |
ectoderm | 6.62e-10 | 95 |
presumptive ectoderm | 6.62e-10 | 95 |
substantia nigra | 5.62e-09 | 3 |
telencephalic nucleus | 5.62e-09 | 3 |
midbrain nucleus | 5.62e-09 | 3 |
neural nucleus | 5.62e-09 | 3 |
nucleus of brain | 5.62e-09 | 3 |
Ammon's horn | 6.66e-09 | 7 |
lobe parts of cerebral cortex | 6.66e-09 | 7 |
hippocampal formation | 6.66e-09 | 7 |
limbic system | 6.66e-09 | 7 |
limbic lobe | 6.66e-09 | 7 |
regional part of midbrain | 6.02e-07 | 4 |
midbrain | 6.02e-07 | 4 |
presumptive midbrain | 6.02e-07 | 4 |
midbrain neural tube | 6.02e-07 | 4 |