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MCL coexpression mm9:150: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540573421858628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02111916259758,1.17553838850282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221664011867973,0.187036279986345,0.479231912864518,0,0.193972155684676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0325376765891953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000349!4.64e-33!3;CL:0000351!4.64e-33!3
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005631!3.67e-34!3;UBERON:0000478!3.67e-34!3;UBERON:0000158!3.67e-34!3;UBERON:0000358!4.64e-33!3;UBERON:0000307!4.64e-33!3;UBERON:0007010!4.64e-33!3;UBERON:0005795!1.36e-25!4;UBERON:0000995!1.36e-25!4;UBERON:0001987!1.84e-23!2;UBERON:0003124!1.84e-23!2;UBERON:0004340!1.84e-23!2;UBERON:0003975!1.22e-20!5;UBERON:0003134!3.50e-13!8;UBERON:0000305!2.01e-12!1;UBERON:0006834!4.30e-12!1;UBERON:0004175!8.55e-12!9;UBERON:0000474!8.55e-12!9;UBERON:0003100!9.05e-10!11
|tfbs_overrepresentation_for_novel_motifs=0.45809,0.409882,0.228484,0.0993561,0.494144,0.645383,0.409587,0.344366,0.529197,0.0950525,0.540897,0.384148,1.00612,0.436226,0.399698,0,0.550263,0.115812,0.280259,0.401943,0.163415,1.04201,0.227825,0.67095,0.8525,0.799072,0.621214,0.272299,0.714378,0.112981,0.669877,0.118657,0.449461,0.973004,0.157773,0.0369787,0.0989823,0.0748711,0.63133,0.000383076,0.0625933,0.256625,0.735043,0.0856442,0.996094,0.195555,0.40349,1.10047,1.32153,0.729758,0.240571,0.307363,1.19994,0.196661,0.207444,0.238705,0.381485,0.357945,1.30766,0.235925,0.716171,0.322008,0.214403,0.228931,0.103779,0.271971,0.810066,0.579681,0.106948,1.15349,0.040614,0.50803,0.0409792,0.22882,0.00944287,0.323454,1.39862,0.682694,0.101256,0.902492,0.515136,0.278186,0.033889,0.315905,0.159015,0.0149342,0.517366,0.247469,0.0490258,0.724139,0.350713,0.161801,0.124959,0.36101,0.122895,0.0494169,0.980179,0.126363,0.403931,0.107916,1.24052,0.377623,0.186129,1.85172,0.515747,0.0438523,0.0915599,0.501203,0.178425,0.28786,0.266654,0.187196,0.461481,0.0624274,0.356064,0.320967,0.0724985,0.102619,0.552803,0.265875,0.23234,0.0569502,0.502793,0.382514,0.398005,0.33658,0.427221,0.121604,0.298156,0.241239,0.176105,1.13351,0.760022,0.482997,0.372627,4.86541,0.715479,0.259071,0.335277,1.06981,0.695277,0.817727,0.120239,0.391294,0.23337,0.124054,0.182502,1.03179,0.725366,0.22322,0.180141,0.000142865,0.197622,0.269539,0.104869,0.250176,0.308912,0.629651,1.23957,0.023459,0.342402,0.158539,0.103126,0.261978,0.855433,1.09787,0.405694,1.30195,0.123488
}}

Latest revision as of 14:47, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:14265002..14265011,-p10@Gpr126
Mm9::chr10:14265012..14265031,-p8@Gpr126
Mm9::chr10:79240006..79240025,+p1@Fstl3
Mm9::chr11:118289807..118289823,+p6@C1qtnf1
Mm9::chr11:55223709..55223714,-p@chr11:55223709..55223714
-
Mm9::chr11:78738676..78738699,+p@chr11:78738676..78738699
+
Mm9::chr11:96829969..96829987,-p2@Sp2
Mm9::chr12:72990438..72990453,+p8@Daam1
Mm9::chr12:82891876..82891885,-p@chr12:82891876..82891885
-
Mm9::chr12:82891888..82891927,-p@chr12:82891888..82891927
-
Mm9::chr12:84866993..84867019,+p2@Dcaf4
Mm9::chr13:13274979..13274984,+p1@Prl2c5
Mm9::chr13:15899074..15899076,+p1@uc007pnt.1
Mm9::chr13:27288509..27288515,+p1@Prl3c1
Mm9::chr13:27808598..27808610,-p1@Prl7d1
Mm9::chr13:27941208..27941211,+p1@Prl2c1
Mm9::chr13:33119277..33119288,+p2@Serpinb9b
Mm9::chr13:33119371..33119382,+p3@Serpinb9b
Mm9::chr13:33251606..33251624,-p1@Serpinb9c
Mm9::chr13:33576653..33576656,+p1@Serpinb9g
Mm9::chr13:49394018..49394026,-p8@Fgd3
Mm9::chr14:55273056..55273059,-p@chr14:55273056..55273059
-
Mm9::chr14:70723551..70723560,-p5@Slc39a14
Mm9::chr14:8827051..8827068,-p4@Dnase1l3
Mm9::chr14:8827077..8827098,-p5@Dnase1l3
Mm9::chr15:25065377..25065406,-p@chr15:25065377..25065406
-
Mm9::chr15:78324802..78324811,-p@chr15:78324802..78324811
-
Mm9::chr17:43526528..43526543,+p3@Gpr116
Mm9::chr18:61265215..61265233,+p2@Csf1r
Mm9::chr18:61265294..61265308,+p5@Csf1r
Mm9::chr18:61265316..61265321,+p7@Csf1r
Mm9::chr1:168931588..168931602,+p3@Fam78b
Mm9::chr2:173946349..173946361,+p@chr2:173946349..173946361
+
Mm9::chr4:150294263..150294306,+p2@Tnfrsf9
Mm9::chr4:43740117..43740134,+p4@Hrct1
Mm9::chr4:98365792..98365802,-p@chr4:98365792..98365802
-
Mm9::chr5:115211954..115211984,-p@chr5:115211954..115211984
-
Mm9::chr5:122656801..122656838,+p6@Hvcn1
Mm9::chr5:125523164..125523188,-p8@Ncor2
Mm9::chr5:125523411..125523420,-p24@Ncor2
Mm9::chr5:135041416..135041431,-p@chr5:135041416..135041431
-
Mm9::chr5:138086923..138086948,-p1@Irs3
Mm9::chr5:138086952..138086965,-p2@Irs3
Mm9::chr5:75551972..75551981,+p7@Pdgfra
Mm9::chr6:115311308..115311317,+p10@Pparg
Mm9::chr6:121293070..121293091,+p5@Slc6a12
Mm9::chr6:137731436..137731455,+p@chr6:137731436..137731455
+
Mm9::chr7:114835354..114835373,+p4@Ppfibp2
Mm9::chr7:118226122..118226145,-p13@Eif4g2
Mm9::chr7:149720488..149720503,+p5@Mrpl23
Mm9::chr7:149855835..149855842,-p@chr7:149855835..149855842
-
Mm9::chr7:150871768..150871785,-p1@Tnfrsf23
Mm9::chr7:17260966..17260972,-p1@Ceacam15
Mm9::chr7:17788797..17788806,+p4@Psg29
Mm9::chr7:17788842..17788851,+p2@Psg29
Mm9::chr7:17788884..17788890,+p3@Psg29
Mm9::chr7:19303466..19303478,+p3@Psg22
Mm9::chr7:29478022..29478029,+p11@Fbxo27
Mm9::chr7:29478051..29478062,+p3@Fbxo27
Mm9::chr7:3169146..3169151,-p4@AU018091
Mm9::chr8:126173640..126173677,+p@chr8:126173640..126173677
+
Mm9::chr8:90796337..90796350,+p7@Adcy7
Mm9::chr8:95485242..95485253,+p@chr8:95485242..95485253
+
Mm9::chr8:95485264..95485279,+p@chr8:95485264..95485279
+
Mm9::chrX:131570617..131570629,-p3@ENSMUST00000153610
Mm9::chrX:131570630..131570638,-p6@ENSMUST00000153610
Mm9::chrX:34758264..34758276,-p@chrX:34758264..34758276
-
Mm9::chrX:34758325..34758332,-p@chrX:34758325..34758332
-
Mm9::chrX:35464090..35464097,-p1@Rhox12
Mm9::chrX:48558793..48558815,-p@chrX:48558793..48558815
-
Mm9::chrX:53570692..53570717,+p1@1600025M17Rik
Mm9::chrX:53570819..53570832,+p1@uc009tga.1
Mm9::chrX:68916840..68916846,+p1@Gpr50
Mm9::chrX:97990788..97990815,+p@chrX:97990788..97990815
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
extraembryonic cell4.64e-333
trophoblast cell4.64e-333

Uber Anatomy
Ontology termp-valuen
extraembryonic membrane3.67e-343
extraembryonic structure3.67e-343
membranous layer3.67e-343
blastocyst4.64e-333
blastula4.64e-333
cleaving embryo4.64e-333
embryonic uterus1.36e-254
uterus1.36e-254
placenta1.84e-232
chorion1.84e-232
allantois1.84e-232
internal female genitalia1.22e-205
female reproductive organ3.50e-138
amnion2.01e-121
uterus or analog4.30e-121
internal genitalia8.55e-129
female reproductive system8.55e-129
female organism9.05e-1011


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.769188
MA0004.10.213528
MA0006.10.078683
MA0007.10.0873645
MA0009.10.131846
MA0014.10.0134611
MA0017.10.199774
MA0019.10.0553471
MA0024.10.356321
MA0025.10.274071
MA0027.11.55683
MA0028.10.167964
MA0029.10.675916
MA0030.10.337793
MA0031.10.295932
MA0038.10.267206
MA0040.10.138321
MA0041.11.05161
MA0042.10.974099
MA0043.10.545125
MA0046.10.459869
MA0048.10.427768
MA0050.10.279098
MA0051.10.027963
MA0052.10.142567
MA0055.10.0344145
MA0056.10
MA0057.10.0505172
MA0058.10.179794
MA0059.10.201301
MA0060.10.0863518
MA0061.11.60849
MA0063.10
MA0066.10.473112
MA0067.10.355095
MA0068.10.0568247
MA0069.11.39362
MA0070.10.426708
MA0071.10.277594
MA0072.10.133251
MA0073.10.000860532
MA0074.10.394486
MA0076.10.383567
MA0077.10.122335
MA0078.10.141924
MA0081.10.245122
MA0083.10.543981
MA0084.10.62696
MA0087.10.160147
MA0088.10.248661
MA0089.10
MA0090.10.0728374
MA0091.10.234764
MA0092.10.992738
MA0093.10.301384
MA0095.10
MA0098.10
MA0100.10.0731749
MA0101.11.36901
MA0103.10.979207
MA0105.10.337472
MA0106.10.968321
MA0107.10.939973
MA0108.20.48967
MA0109.10
MA0111.10.775399
MA0113.10.299044
MA0114.10.636829
MA0115.10.549167
MA0116.10.748779
MA0117.10.50318
MA0119.10.113613
MA0122.10.179829
MA0124.10.315387
MA0125.10.262873
MA0130.10
MA0131.10.198855
MA0132.10
MA0133.10
MA0135.10.207785
MA0136.10.0920183
MA0139.10.45162
MA0140.10.370215
MA0141.10.420953
MA0142.10.586906
MA0143.10.324302
MA0144.10.483326
MA0145.10.01634
MA0146.10.0225582
MA0147.10.16212
MA0148.10.2399
MA0149.10.0505757
MA0062.20.0197376
MA0035.21.29963
MA0039.20.101575
MA0138.20.746571
MA0002.20.339975
MA0137.20.0728636
MA0104.20.191573
MA0047.20.266104
MA0112.20.908216
MA0065.20.168667
MA0150.11.43256
MA0151.10
MA0152.10.266258
MA0153.10.623355
MA0154.10.991071
MA0155.10.0153608
MA0156.10.559939
MA0157.10.524245
MA0158.10
MA0159.10.291409
MA0160.10.42765
MA0161.10
MA0162.10.0121882
MA0163.10.323893
MA0164.10.0210058
MA0080.20.0553558
MA0018.20.74374
MA0099.21.57981
MA0079.25.21768e-07
MA0102.20.673648
MA0258.10.737695
MA0259.10.140694
MA0442.10
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