UBERON:0000200: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 10: | Line 10: | ||
|has_quality= | |has_quality= | ||
|id=UBERON:0000200 | |id=UBERON:0000200 | ||
|is_a=UBERON:0000064;;UBERON:0004121 | |is_a=UBERON:0000064 ;;UBERON:0004121 ;;UBERON:0010314 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=gyrus | |name=gyrus | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001869 | |part_of=UBERON:0001869 | ||
Latest revision as of 17:07, 12 September 2014
| Name: | gyrus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A ridge, generally surrounded by one or more sulci." [Wikipedia:Gyrus] | ||
| Xrefs: |
| ||
| Synonyms: |
"cerebral gyrus" EXACT [BTO:0002495] "gyri" RELATED PLURAL [BTO:0002495] "gyri of cerebrum" RELATED PLURAL [BTO:0002495] "gyrus of cerebrum" RELATED [BTO:0002495] "gyrus of neuraxis" EXACT [FMA:83874] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0001869(cerebral hemisphere) |
Children
| is a: | UBERON:0002581 (postcentral gyrus),UBERON:0002771 (middle temporal gyrus),UBERON:0007190 (paracentral gyrus),UBERON:0015593 (frontal gyrus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10150-102I6 (medial frontal gyrus, adult, donor10252)
- 10156-103A3 (medial temporal gyrus, adult, donor10252)
- 10170-103B8 (medial frontal gyrus - adult, donor10196)
- 10183-103D3 (medial temporal gyrus - adult, donor10196)
- 10352-105E1 (medial frontal gyrus, newborn, donor10223)
- 10353-105E2 (medial temporal gyrus, newborn, donor10223)
- 10368-105F8 (medial frontal gyrus, adult, donor10258)
- 10376-105G7 (medial temporal gyrus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000200 (gyrus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.83e-98 | FFCP PHASE2:Hg19::chr5:160720498..160720507,-#_d6fea9d87e24f4d58ec4ce531d131623 | p@chr5:160720498..160720507, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:160720498..160720507,-#_d6fea9d87e24f4d58ec4ce531d131623 | p@chr5:160720498..160720507, - |
| 1.86e-98 | FFCP PHASE2:Hg19::chr3:123813487..123813494,+#_05f9b8ad78d1d6b9bc1a7da5b4ff9474 | p22@KALRN |
| 1.86e-98 | FFCP PHASE1:Hg19::chr3:123813487..123813494,+#_05f9b8ad78d1d6b9bc1a7da5b4ff9474 | p22@KALRN |
| 3.08e-98 | FFCP PHASE1:Hg19::chr2:76412119..76412138,+#_433d4e07d3ee327eb0c75ddafb2e22fd | p@chr2:76412119..76412138, + |
| 3.08e-98 | FFCP PHASE2:Hg19::chr2:76412119..76412138,+#_433d4e07d3ee327eb0c75ddafb2e22fd | p@chr2:76412119..76412138, + |
| 5.87e-85 | FFCP PHASE1:Hg19::chr21:16999573..16999589,-#_c3a0b1d297d7768fcc55bf1cec050422 | p@chr21:16999573..16999589, - |
| 5.87e-85 | FFCP PHASE2:Hg19::chr21:16999573..16999589,-#_c3a0b1d297d7768fcc55bf1cec050422 | p@chr21:16999573..16999589, - |
| 1.86e-84 | FFCP PHASE1:Hg19::chr4:90625735..90625756,-#_1f4f311c5ef369512da9b5db45c07c5e | p@chr4:90625735..90625756, - |
| 1.86e-84 | FFCP PHASE2:Hg19::chr4:90625735..90625756,-#_1f4f311c5ef369512da9b5db45c07c5e | p@chr4:90625735..90625756, - |
| 1.86e-84 | FFCP PHASE2:Hg19::chr12:45307764..45307772,-#_1f4f311c5ef369512da9b5db45c07c5e | p16@NELL2 |
| 1.86e-84 | FFCP PHASE1:Hg19::chr12:45307764..45307772,-#_1f4f311c5ef369512da9b5db45c07c5e | p16@NELL2 |
| 3.62e-82 | FFCP PHASE1:Hg19::chr18:5721892..5721909,+#_af0e897e88c6d556555feab94ba1ad7d | p@chr18:5721892..5721909, + |
| 3.62e-82 | FFCP PHASE2:Hg19::chr18:5721892..5721909,+#_af0e897e88c6d556555feab94ba1ad7d | p@chr18:5721892..5721909, + |
| 3.62e-82 | FFCP PHASE2:Hg19::chr21:16999470..16999481,-#_af0e897e88c6d556555feab94ba1ad7d | p@chr21:16999470..16999481, - |
| 3.62e-82 | FFCP PHASE1:Hg19::chr21:16999470..16999481,-#_af0e897e88c6d556555feab94ba1ad7d | p@chr21:16999470..16999481, - |
| 6.1e-79 | FFCP PHASE2:Hg19::chr10:79383809..79383833,+#_94bd336db2c9da009776ab4bd43336f3 | p@chr10:79383809..79383833, + |
| 6.1e-79 | FFCP PHASE1:Hg19::chr10:79383809..79383833,+#_94bd336db2c9da009776ab4bd43336f3 | p@chr10:79383809..79383833, + |
| 6.97e-79 | FFCP PHASE2:Hg19::chr21:16999597..16999614,-#_4d45ffee8057a96be7ac805f2a34da03 | p@chr21:16999597..16999614, - |
| 6.97e-79 | FFCP PHASE2:Hg19::chr10:65820364..65820377,+#_4d45ffee8057a96be7ac805f2a34da03 | p@chr10:65820364..65820377, + |
| 6.97e-79 | FFCP PHASE1:Hg19::chr21:16999597..16999614,-#_4d45ffee8057a96be7ac805f2a34da03 | p@chr21:16999597..16999614, - |
| 6.97e-79 | FFCP PHASE1:Hg19::chr10:65820364..65820377,+#_4d45ffee8057a96be7ac805f2a34da03 | p@chr10:65820364..65820377, + |
| 4.67e-75 | FFCP PHASE2:Hg19::chr12:40713926..40713942,+#_1c72e3f1e6f3be7951928f8b9984de91 | p14@LRRK2 |
| 4.67e-75 | FFCP PHASE1:Hg19::chr12:40713926..40713942,+#_1c72e3f1e6f3be7951928f8b9984de91 | p14@LRRK2 |
| 8.94e-75 | FFCP PHASE1:Hg19::chr8:27598379..27598404,-#_4b7891c472e61d03fa28a062c530e502 | p@chr8:27598379..27598404, - |
| 8.94e-75 | FFCP PHASE2:Hg19::chr8:27598379..27598404,-#_4b7891c472e61d03fa28a062c530e502 | p@chr8:27598379..27598404, - |
| 4.08e-74 | FFCP PHASE1:Hg19::chr2:189249038..189249043,-#_1486589e97b93de27e2aebb3842bf52a | p@chr2:189249038..189249043, - |
| 4.08e-74 | FFCP PHASE2:Hg19::chr2:189249038..189249043,-#_1486589e97b93de27e2aebb3842bf52a | p@chr2:189249038..189249043, - |
| 4.26e-74 | FFCP PHASE1:Hg19::chr16:19191426..19191435,+#_506a007ac7e2fb6a65fcc54ba66a39ad | p@chr16:19191426..19191435, + |
| 4.26e-74 | FFCP PHASE2:Hg19::chr16:19191426..19191435,+#_506a007ac7e2fb6a65fcc54ba66a39ad | p@chr16:19191426..19191435, + |
| 6.76e-74 | FFCP PHASE1:Hg19::chr3:115324099..115324113,+#_cb9302b8fc60204a0bdce3488fcfb933 | p@chr3:115324099..115324113, + |
| 6.76e-74 | FFCP PHASE2:Hg19::chr3:115324099..115324113,+#_cb9302b8fc60204a0bdce3488fcfb933 | p@chr3:115324099..115324113, + |
| 1.44e-73 | FFCP PHASE2:Hg19::chr20:60174794..60174806,+#_30df176ca91a104ef76523d25ccbb4b5 | p4@CDH4 |
| 1.44e-73 | FFCP PHASE1:Hg19::chr20:60174794..60174806,+#_30df176ca91a104ef76523d25ccbb4b5 | p4@CDH4 |
| 6.58e-70 | FFCP PHASE2:Hg19::chr2:76412139..76412163,+#_cd1763951af92fcbc32428a5b1f26f09 | p@chr2:76412139..76412163, + |
| 6.58e-70 | FFCP PHASE1:Hg19::chr2:76412139..76412163,+#_cd1763951af92fcbc32428a5b1f26f09 | p@chr2:76412139..76412163, + |
| 7.41e-70 | FFCP PHASE2:Hg19::chr3:178254022..178254025,+#_3022be13bb319d860cee46a330b734bd | p4@KCNMB2 |
| 7.41e-70 | FFCP PHASE1:Hg19::chr3:178254022..178254025,+#_3022be13bb319d860cee46a330b734bd | p4@KCNMB2 |
| 2.43e-69 | FFCP PHASE1:Hg19::chr14:87928470..87928490,-#_da5a3ed7a34a8f8d977b9929d15da735 | p@chr14:87928470..87928490, - |
| 2.43e-69 | FFCP PHASE2:Hg19::chr14:87928470..87928490,-#_da5a3ed7a34a8f8d977b9929d15da735 | p@chr14:87928470..87928490, - |
| 2.72e-69 | FFCP PHASE2:Hg19::chr1:162458051..162458067,-#_79e936232226747604346b0153786830 | p@chr1:162458051..162458067, - |
| 2.72e-69 | FFCP PHASE1:Hg19::chr1:162458051..162458067,-#_79e936232226747604346b0153786830 | p@chr1:162458051..162458067, - |
| 3.47e-69 | FFCP PHASE2:Hg19::chr20:62738879..62738896,-#_ac6116cfc3b6cac7b4860f325b692f72 | p2@NPBWR2 |
| 3.47e-69 | FFCP PHASE1:Hg19::chr20:62738879..62738896,-#_ac6116cfc3b6cac7b4860f325b692f72 | p2@NPBWR2 |
| 7.04e-69 | FFCP PHASE1:Hg19::chr13:47471045..47471055,-#_ba59866f5c613ee593a77de1eb8c720e | p10@HTR2A |
| 7.04e-69 | FFCP PHASE2:Hg19::chr13:47471045..47471055,-#_ba59866f5c613ee593a77de1eb8c720e | p10@HTR2A |
| 7.27e-69 | FFCP PHASE1:Hg19::chr2:220812508..220812521,+#_460e0bc8f78f748ef1ad2ebecf6e2b7c | p@chr2:220812508..220812521, + |
| 7.27e-69 | FFCP PHASE2:Hg19::chr2:220812508..220812521,+#_460e0bc8f78f748ef1ad2ebecf6e2b7c | p@chr2:220812508..220812521, + |
| 1.68e-68 | FFCP PHASE1:Hg19::chr12:91069081..91069092,+#_69aa6874fbb7d606ee2b4e9ffac4dc7f | p@chr12:91069081..91069092, + |
| 1.68e-68 | FFCP PHASE1:Hg19::chr14:71679425..71679447,+#_69aa6874fbb7d606ee2b4e9ffac4dc7f | p1@ENST00000553621 |
| 1.68e-68 | FFCP PHASE2:Hg19::chr14:71679425..71679447,+#_69aa6874fbb7d606ee2b4e9ffac4dc7f | p1@ENST00000553621 |
| 1.68e-68 | FFCP PHASE2:Hg19::chr12:91069081..91069092,+#_69aa6874fbb7d606ee2b4e9ffac4dc7f | p@chr12:91069081..91069092, + |
| 5.14e-68 | FFCP PHASE2:Hg19::chr10:68687632..68687644,+#_29937f9fa87cf047d20fb89edfdf9749 | p3@LRRTM3 |
| 5.14e-68 | FFCP PHASE1:Hg19::chr10:68687632..68687644,+#_29937f9fa87cf047d20fb89edfdf9749 | p3@LRRTM3 |
| 8.37e-67 | FFCP PHASE2:Hg19::chr19:10506527..10506555,-#_6d28baf874f8daa110b0dea43e158ec6 | p5@CDC37 |
| 8.37e-67 | FFCP PHASE1:Hg19::chr19:10506527..10506555,-#_6d28baf874f8daa110b0dea43e158ec6 | p5@CDC37 |
| 1.84e-66 | FFCP PHASE1:Hg19::chr6:131277510..131277530,-#_a5bc6510cfb21b8f9958ffe809067f2d | p22@EPB41L2 |
| 1.84e-66 | FFCP PHASE2:Hg19::chr6:131277510..131277530,-#_a5bc6510cfb21b8f9958ffe809067f2d | p22@EPB41L2 |
| 2.83e-66 | FFCP PHASE1:Hg19::chr6:73906231..73906237,+#_6aa227d1d38a089cf14f77a975b1fbfe | p@chr6:73906231..73906237, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr11:132901592..132901601,-#_6aa227d1d38a089cf14f77a975b1fbfe | p@chr11:132901592..132901601, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr11:132901592..132901601,-#_6aa227d1d38a089cf14f77a975b1fbfe | p@chr11:132901592..132901601, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr8:27606125..27606134,-#_6aa227d1d38a089cf14f77a975b1fbfe | p6@CCDC25 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr6:73906231..73906237,+#_6aa227d1d38a089cf14f77a975b1fbfe | p@chr6:73906231..73906237, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr8:27606125..27606134,-#_6aa227d1d38a089cf14f77a975b1fbfe | p6@CCDC25 |
| 2.89e-66 | FFCP PHASE1:Hg19::chr17:9550376..9550379,-#_5753883e13a19fde639a224ca12646c5 | p@chr17:9550376..9550379, - |
| 2.89e-66 | FFCP PHASE2:Hg19::chr17:9550376..9550379,-#_5753883e13a19fde639a224ca12646c5 | p@chr17:9550376..9550379, - |
| 3.24e-66 | FFCP PHASE1:Hg19::chr5:17404147..17404159,+#_b1096f393a645deb52976e071dbca16c | p2@ENST00000508677 |
| 3.24e-66 | FFCP PHASE2:Hg19::chr5:17404147..17404159,+#_b1096f393a645deb52976e071dbca16c | p2@ENST00000508677 |
| 5.08e-66 | FFCP PHASE2:Hg19::chr10:64136084..64136105,+#_c2b0b9798a9e56a825e239555ce8b4ae | p7@ZNF365 |
| 5.08e-66 | FFCP PHASE1:Hg19::chr10:64136084..64136105,+#_c2b0b9798a9e56a825e239555ce8b4ae | p7@ZNF365 |
| 5.13e-66 | FFCP PHASE2:Hg19::chr11:133197324..133197336,-#_21c1f97b9fb37b9ac94a774df29b0991 | p@chr11:133197324..133197336, - |
| 5.13e-66 | FFCP PHASE1:Hg19::chr6:112803862..112803893,+#_21c1f97b9fb37b9ac94a774df29b0991 | p@chr6:112803862..112803893, + |
| 5.13e-66 | FFCP PHASE1:Hg19::chr11:133197324..133197336,-#_21c1f97b9fb37b9ac94a774df29b0991 | p@chr11:133197324..133197336, - |
| 5.13e-66 | FFCP PHASE2:Hg19::chr6:112803862..112803893,+#_21c1f97b9fb37b9ac94a774df29b0991 | p@chr6:112803862..112803893, + |
| 7.11e-66 | FFCP PHASE2:Hg19::chr3:155394152..155394163,-#_23647ede80d92ef52e4d3b94329258a1 | p4@PLCH1 |
| 7.11e-66 | FFCP PHASE1:Hg19::chr3:155394152..155394163,-#_23647ede80d92ef52e4d3b94329258a1 | p4@PLCH1 |
| 7.17e-66 | FFCP PHASE1:Hg19::chr2:76412175..76412186,+#_887f3bfc2b3549d1394c2b11c08dd07e | p@chr2:76412175..76412186, + |
| 7.17e-66 | FFCP PHASE2:Hg19::chr2:76412175..76412186,+#_887f3bfc2b3549d1394c2b11c08dd07e | p@chr2:76412175..76412186, + |
| 1.25e-65 | FFCP PHASE2:Hg19::chr1:36024414..36024431,+#_77752c6d47a0ec52ba31c98bd7753884 | p3@AB383919 |
| 1.25e-65 | FFCP PHASE1:Hg19::chr1:36024414..36024431,+#_77752c6d47a0ec52ba31c98bd7753884 | p3@AB383919 |
| 2.44e-65 | FFCP PHASE1:Hg19::chr16:31001949..31001964,-#_6a3fefe4776e0c462768d6fbb94cd737 | p1@AL713744 |
| 2.44e-65 | FFCP PHASE2:Hg19::chr16:31001949..31001964,-#_6a3fefe4776e0c462768d6fbb94cd737 | p1@AL713744 |
| 7.87e-64 | FFCP PHASE2:Hg19::chr8:27606152..27606165,-#_8c395795acb07e15f442f65f649a20a6 | p3@CCDC25 |
| 7.87e-64 | FFCP PHASE1:Hg19::chr8:27606152..27606165,-#_8c395795acb07e15f442f65f649a20a6 | p3@CCDC25 |
| 1.02e-63 | FFCP PHASE2:Hg19::chr7:45113897..45113916,+#_733dfa5d25af86c38991add8594e9230 | p@chr7:45113897..45113916, + |
| 1.02e-63 | FFCP PHASE1:Hg19::chr7:45113897..45113916,+#_733dfa5d25af86c38991add8594e9230 | p@chr7:45113897..45113916, + |
| 1.71e-63 | FFCP PHASE1:Hg19::chr8:35828134..35828145,+#_caad34cc10e7ade7174a869417e0170d | p@chr8:35828134..35828145, + |
| 1.71e-63 | FFCP PHASE2:Hg19::chr8:35828134..35828145,+#_caad34cc10e7ade7174a869417e0170d | p@chr8:35828134..35828145, + |
| 2.22e-63 | FFCP PHASE2:Hg19::chr4:118292684..118292695,+#_cfe37098fa32cbe8a10c8539d8399067 | p@chr4:118292684..118292695, + |
| 2.22e-63 | FFCP PHASE1:Hg19::chr4:118292684..118292695,+#_cfe37098fa32cbe8a10c8539d8399067 | p@chr4:118292684..118292695, + |
| 3.08e-63 | FFCP PHASE2:Hg19::chr2:115200003..115200031,+#_9ed05c3243985f5612f4f511790da6c7 | p8@DPP10 |
| 3.08e-63 | FFCP PHASE1:Hg19::chr2:115200003..115200031,+#_9ed05c3243985f5612f4f511790da6c7 | p8@DPP10 |
| 3.43e-63 | FFCP PHASE1:Hg19::chr4:176882799..176882812,-#_1502cc95e9f835c9a88eb8dd3c31cb74 | p@chr4:176882799..176882812, - |
| 3.43e-63 | FFCP PHASE2:Hg19::chr4:176882799..176882812,-#_1502cc95e9f835c9a88eb8dd3c31cb74 | p@chr4:176882799..176882812, - |
| 1.11e-62 | FFCP PHASE1:Hg19::chr2:17836640..17836651,+#_bbbd6ed8ac5ba5eb36f2bc352f423152 | p@chr2:17836640..17836651, + |
| 1.11e-62 | FFCP PHASE2:Hg19::chr2:17836640..17836651,+#_bbbd6ed8ac5ba5eb36f2bc352f423152 | p@chr2:17836640..17836651, + |
| 1.11e-62 | FFCP PHASE2:Hg19::chr6:95445637..95445675,-#_bbbd6ed8ac5ba5eb36f2bc352f423152 | p@chr6:95445637..95445675, - |
| 1.11e-62 | FFCP PHASE1:Hg19::chr6:95445637..95445675,-#_bbbd6ed8ac5ba5eb36f2bc352f423152 | p@chr6:95445637..95445675, - |
| 1.37e-62 | FFCP PHASE2:Hg19::chr20:24043888..24043912,+#_89c977fd0169b3df1b32de7f130e516c | p@chr20:24043888..24043912, + |
| 1.37e-62 | FFCP PHASE1:Hg19::chr20:24043888..24043912,+#_89c977fd0169b3df1b32de7f130e516c | p@chr20:24043888..24043912, + |
