UBERON:0001690: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0001690 | |id=UBERON:0001690 | ||
|is_a=UBERON:0000020;;UBERON:0010314 | |is_a=UBERON:0000020 ;;UBERON:0010314 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=ear | |name=ear | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000033;;UBERON:0002105 | |part_of=UBERON:0000033;;UBERON:0002105 | ||
Latest revision as of 17:19, 12 September 2014
| Name: | ear | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory apparatus" RELATED [] "auris" RELATED [BTO:0000368] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138 | ||
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system) |
Children
| part of: | UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42206745..42206774, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_1d13cb136fd2abf98a4e0d45469142ff | p1@Espnl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr18:42158627..42158630, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:78257491..78257498, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:128881546..128881553, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_1d13cb136fd2abf98a4e0d45469142ff | p10@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_1d13cb136fd2abf98a4e0d45469142ff | p21@Espn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr12:13508046..13508055, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:150945209..150945220, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:154693281..154693317, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_1d13cb136fd2abf98a4e0d45469142ff | p10@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:128881546..128881553, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chrX:154140800..154140810, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:152453066..152453075, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_1d13cb136fd2abf98a4e0d45469142ff | p10@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr6:86746562..86746579, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_1d13cb136fd2abf98a4e0d45469142ff | p5@Fer1l6 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_1d13cb136fd2abf98a4e0d45469142ff | p7@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_1d13cb136fd2abf98a4e0d45469142ff | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr12:13508046..13508055, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr4:63079735..63079745, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:147854240..147854249, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr8:13414266..13414279, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:53464168..53464175, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:72652660..72652667, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:89702580..89702593, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_1d13cb136fd2abf98a4e0d45469142ff | p7@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_1d13cb136fd2abf98a4e0d45469142ff | p6@Jag1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:114603036..114603048, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr16:93971325..93971337, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_1d13cb136fd2abf98a4e0d45469142ff | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_1d13cb136fd2abf98a4e0d45469142ff | p3@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_1d13cb136fd2abf98a4e0d45469142ff | p6@Fam70b |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_1d13cb136fd2abf98a4e0d45469142ff | p9@Ankrd24 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_1d13cb136fd2abf98a4e0d45469142ff | p1@Otog |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_1d13cb136fd2abf98a4e0d45469142ff | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_1d13cb136fd2abf98a4e0d45469142ff | p5@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_1d13cb136fd2abf98a4e0d45469142ff | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_1d13cb136fd2abf98a4e0d45469142ff | p5@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Tectb |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_1d13cb136fd2abf98a4e0d45469142ff | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_1d13cb136fd2abf98a4e0d45469142ff | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_1d13cb136fd2abf98a4e0d45469142ff | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:114603036..114603048, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:78257518..78257522, + |
