UBERON:0002100: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0002100 | |id=UBERON:0002100 | ||
|is_a=UBERON: | |is_a=UBERON:0011676 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=trunk | |name=trunk | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of=UBERON:0013702 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;UBPROP:0000001 "Organism subdivision that is the part of the body posterior to the head and anterior to the tail.[AAO]" xsd:string;;UBPROP:0000001 "Organism subdivision which is the part of the body posterior to the head and anterior to the tail.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;UBPROP:0000001 "Organism subdivision that is the part of the body posterior to the head and anterior to the tail.[AAO]" xsd:string;;UBPROP:0000001 "Organism subdivision which is the part of the body posterior to the head and anterior to the tail.[TAO]" xsd:string | ||
Latest revision as of 17:25, 12 September 2014
| Name: | trunk | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Organism subdivision which is the part of the body posterior to the cervical region (or head, when cervical region not present) and anterior to the caudal region. Includes the sacrum when present." [TAO:0001115, UBERONREF:0000006, Wikipedia:Torso] | ||
| Xrefs: |
| ||
| Synonyms: |
"Rumpf" RELATED [BTO:0001493] "torso" EXACT [] | ||
| Comments: | editor note - check AAO | ||
| Alt_id: | UBERON:FMA_7181-MIAA_0000296-XAO_0003025-ZFA_0001115 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011676(subdivision of organism along main body axis) |
|---|---|
| disjoint_from: | UBERON:0002464(nerve trunk) |
| part_of: | UBERON:0013702(body proper) |
Children
| is a: | FF:0011178 (Skin - torso) |
|---|---|
| part of: | UBERON:0001774 (muscle of trunk),UBERON:0002075 (viscus),UBERON:0002201 (vasculature of trunk),UBERON:0003513 (trunk blood vessel),UBERON:0003586 (trunk connective tissue),UBERON:0003898 (skeletal muscle of trunk),UBERON:0004161 (septum transversum),UBERON:0005177 (trunk region element),UBERON:0005256 (trunk mesenchyme),UBERON:0008425 (mammary ridge),UBERON:0009569 (subdivision of trunk) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002100 (trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.08e-26 | FFCP PHASE2:Hg19::chr19:48894762..48894830,-#_31a8f687411b6827f948751103a99b2e | p1@KDELR1 |
| 1.08e-26 | FFCP PHASE1:Hg19::chr19:48894762..48894830,-#_31a8f687411b6827f948751103a99b2e | p1@KDELR1 |
| 1.17e-26 | FFCP PHASE1:Hg19::chr15:96874012..96874042,+#_b26820feaf3eab6321aaf00dec2e792b | p2@NR2F2 |
| 1.17e-26 | FFCP PHASE2:Hg19::chr15:96874012..96874042,+#_b26820feaf3eab6321aaf00dec2e792b | p2@NR2F2 |
| 1.41e-26 | FFCP PHASE2:Mm9::chr2:147872790..147872821,-#_70f5da61d219c18d03c7012ce59bb544 | p2@Foxa2 |
| 1.41e-26 | FFCP PHASE1:Mm9::chr2:147872790..147872821,-#_70f5da61d219c18d03c7012ce59bb544 | p2@Foxa2 |
| 1.68e-26 | FFCP PHASE2:Hg19::chr8:30242040..30242045,+#_fa4c1b735b1f22457e2cd3a8323ff5c9 | p2@RBPMS |
| 1.68e-26 | FFCP PHASE1:Hg19::chr8:30242040..30242045,+#_fa4c1b735b1f22457e2cd3a8323ff5c9 | p2@RBPMS |
| 9.29e-26 | FFCP PHASE2:Hg19::chr19:10445451..10445513,-#_dc17c1568ef143403f466179d70101f2 | p@chr19:10445451..10445513, - |
| 9.29e-26 | FFCP PHASE1:Hg19::chr19:10445451..10445513,-#_dc17c1568ef143403f466179d70101f2 | p@chr19:10445451..10445513, - |
| 1.98e-25 | FFCP PHASE2:Hg19::chr15:96874145..96874166,+#_bdb8a2b2339442e64a322c50d5dd62b8 | p7@NR2F2 |
| 1.98e-25 | FFCP PHASE1:Hg19::chr15:96874145..96874166,+#_bdb8a2b2339442e64a322c50d5dd62b8 | p7@NR2F2 |
| 5.05e-25 | FFCP PHASE2:Hg19::chr7:6523755..6523829,-#_2e42b697e71f30ac3824797dab14c455 | p1@DAGLB, p1@KDELR2 |
| 5.05e-25 | FFCP PHASE1:Hg19::chr7:6523755..6523829,-#_2e42b697e71f30ac3824797dab14c455 | p1@DAGLB, p1@KDELR2 |
| 9.32e-25 | FFCP PHASE2:Hg19::chr8:30242048..30242064,+#_f6dd61199f16d5fd1cdb8d2546673923 | p1@RBPMS |
| 9.32e-25 | FFCP PHASE1:Hg19::chr8:30242048..30242064,+#_f6dd61199f16d5fd1cdb8d2546673923 | p1@RBPMS |
| 1.39e-24 | FFCP PHASE1:Hg19::chr8:30241934..30241945,+#_9cbff81ab94e49f56d65baaa96043461 | p3@RBPMS |
| 1.39e-24 | FFCP PHASE2:Hg19::chr8:30241934..30241945,+#_9cbff81ab94e49f56d65baaa96043461 | p3@RBPMS |
| 8.19e-24 | FFCP PHASE2:Mm9::chr4:149377244..149377258,-#_0135410f22af703aa97ad7c9a8426e91 | p3@H6pd |
| 8.19e-24 | FFCP PHASE1:Mm9::chr4:149377244..149377258,-#_0135410f22af703aa97ad7c9a8426e91 | p3@H6pd |
| 1.01e-23 | FFCP PHASE2:Hg19::chr19:50379867..50379920,-#_9106b19151bd809a6793d17cd2ab4d03 | p1@AKT1S1 |
| 1.01e-23 | FFCP PHASE1:Hg19::chr19:50379867..50379920,-#_9106b19151bd809a6793d17cd2ab4d03 | p1@AKT1S1 |
| 1.07e-23 | FFCP PHASE1:Hg19::chr1:153581416..153581458,-#_7915a101cdadba3905753a2a1a792a82 | p4@S100A16 |
| 1.07e-23 | FFCP PHASE2:Hg19::chr1:153581416..153581458,-#_7915a101cdadba3905753a2a1a792a82 | p4@S100A16 |
| 1.08e-23 | FFCP PHASE1:Hg19::chr2:27255806..27255879,+#_a78d8b348b82492e9b666774f6bc9a04 | p1@TMEM214 |
| 1.08e-23 | FFCP PHASE2:Hg19::chr2:27255806..27255879,+#_a78d8b348b82492e9b666774f6bc9a04 | p1@TMEM214 |
| 1.32e-23 | FFCP PHASE1:Hg19::chr5:148521286..148521377,+#_2dbc824ca06e5419d54e32aef38ab846 | p2@ABLIM3 |
| 1.32e-23 | FFCP PHASE2:Hg19::chr5:148521286..148521377,+#_2dbc824ca06e5419d54e32aef38ab846 | p2@ABLIM3 |
| 1.34e-23 | FFCP PHASE1:Hg19::chr20:30795664..30795743,+#_c3667715b2b6b06323a08a7c9d771a8d | p1@POFUT1 |
| 1.34e-23 | FFCP PHASE2:Hg19::chr20:30795664..30795743,+#_c3667715b2b6b06323a08a7c9d771a8d | p1@POFUT1 |
| 1.5e-23 | FFCP PHASE1:Hg19::chr4:39529049..39529067,-#_9180f2730f97c1dba0af40cc68c9379f | p1@UGDH |
| 1.5e-23 | FFCP PHASE2:Hg19::chr4:39529049..39529067,-#_9180f2730f97c1dba0af40cc68c9379f | p1@UGDH |
| 1.59e-23 | FFCP PHASE2:Hg19::chr1:1167419..1167430,-#_6f875b035bf283439d24eeea5e46f16a | p3@SDF4 |
| 1.59e-23 | FFCP PHASE1:Hg19::chr1:1167419..1167430,-#_6f875b035bf283439d24eeea5e46f16a | p3@SDF4 |
| 1.92e-23 | FFCP PHASE2:Hg19::chr2:73114502..73114561,+#_8368512f6fc2c03afaf629977cf2f575 | p1@SPR |
| 1.92e-23 | FFCP PHASE1:Hg19::chr2:73114502..73114561,+#_8368512f6fc2c03afaf629977cf2f575 | p1@SPR |
| 1.93e-23 | FFCP PHASE2:Hg19::chr9:140446314..140446398,+#_50554cc0156afddc37b3c60d011350fb | p1@MRPL41 |
| 1.93e-23 | FFCP PHASE1:Hg19::chr9:140446314..140446398,+#_50554cc0156afddc37b3c60d011350fb | p1@MRPL41 |
| 2.36e-23 | FFCP PHASE2:Hg19::chr3:150264272..150264329,-#_9300eb8128e02cd89bf19120af4dd352 | p1@SERP1 |
| 2.36e-23 | FFCP PHASE1:Hg19::chr3:150264272..150264329,-#_9300eb8128e02cd89bf19120af4dd352 | p1@SERP1 |
| 2.53e-23 | FFCP PHASE1:Hg19::chr11:66056596..66056622,-#_94ad4aec5967ebb2dd9794968641af53 | p1@YIF1A |
| 2.53e-23 | FFCP PHASE2:Hg19::chr11:66056596..66056622,-#_94ad4aec5967ebb2dd9794968641af53 | p1@YIF1A |
| 3.19e-23 | FFCP PHASE2:Hg19::chr1:153581468..153581499,-#_397b8963edf21df424081e06c4dd3522 | p3@S100A16 |
| 3.19e-23 | FFCP PHASE1:Hg19::chr1:153581468..153581499,-#_397b8963edf21df424081e06c4dd3522 | p3@S100A16 |
| 5.69e-23 | FFCP PHASE1:Hg19::chr7:148725544..148725630,-#_c5be91bab2b179047dbe23aeccb2b932 | p1@PDIA4 |
| 5.69e-23 | FFCP PHASE2:Hg19::chr7:148725544..148725630,-#_c5be91bab2b179047dbe23aeccb2b932 | p1@PDIA4 |
| 5.77e-23 | FFCP PHASE2:Mm9::chr19:34821713..34821741,-#_f7419dd67814209274baf9ae5097264a | p4@Slc16a12 |
| 5.77e-23 | FFCP PHASE1:Mm9::chr19:34821713..34821741,-#_f7419dd67814209274baf9ae5097264a | p4@Slc16a12 |
| 6.07e-23 | FFCP PHASE1:Mm9::chr4:144483085..144483096,+#_ce30c52af55f4f6406f511a8891e620b | p12@Dhrs3 |
| 6.07e-23 | FFCP PHASE2:Mm9::chr4:144483085..144483096,+#_ce30c52af55f4f6406f511a8891e620b | p12@Dhrs3 |
| 6.12e-23 | FFCP PHASE2:Mm9::chr10:127188729..127188740,-#_5c9f3fc5fd4d304ba7f0c289f5b1d71d | p3@Gpr182 |
| 6.12e-23 | FFCP PHASE1:Mm9::chr10:127188729..127188740,-#_5c9f3fc5fd4d304ba7f0c289f5b1d71d | p3@Gpr182 |
| 6.5e-23 | FFCP PHASE2:Hg19::chr1:153581503..153581520,-#_ead01e4eb88760df3bcc6056bd7a614f | p5@S100A16 |
| 6.5e-23 | FFCP PHASE1:Hg19::chr1:153581503..153581520,-#_ead01e4eb88760df3bcc6056bd7a614f | p5@S100A16 |
| 6.69e-23 | FFCP PHASE2:Hg19::chr2:85788551..85788601,-#_c7afa70b6e4146d78892d10681882828 | p2@GGCX |
| 6.69e-23 | FFCP PHASE1:Hg19::chr2:85788551..85788601,-#_c7afa70b6e4146d78892d10681882828 | p2@GGCX |
| 6.7e-23 | FFCP PHASE1:Hg19::chr1:113249734..113249762,-#_fe8985cbb93e5c1145c1a2a7ef7540b0 | p1@RHOC |
| 6.7e-23 | FFCP PHASE2:Hg19::chr1:113249734..113249762,-#_fe8985cbb93e5c1145c1a2a7ef7540b0 | p1@RHOC |
| 8.22e-23 | FFCP PHASE1:Hg19::chr11:69455914..69455932,+#_c362e6f4ad4d4a3abdb202f30649a597 | p1@CCND1 |
| 8.22e-23 | FFCP PHASE2:Hg19::chr11:69455914..69455932,+#_c362e6f4ad4d4a3abdb202f30649a597 | p1@CCND1 |
| 1.24e-22 | FFCP PHASE1:Mm9::chr2:3031492..3031497,+#_c2e42ccfce5f672993d52aa5afd84980 | p3@Fam171a1 |
| 1.24e-22 | FFCP PHASE2:Mm9::chr2:3031492..3031497,+#_c2e42ccfce5f672993d52aa5afd84980 | p3@Fam171a1 |
| 1.27e-22 | FFCP PHASE2:Hg19::chr15:96874244..96874259,+#_0c31188ed927dc8cd7672ad70649bdbe | p5@NR2F2 |
| 1.27e-22 | FFCP PHASE1:Hg19::chr15:96874244..96874259,+#_0c31188ed927dc8cd7672ad70649bdbe | p5@NR2F2 |
| 1.63e-22 | FFCP PHASE1:Mm9::chr19:44061023..44061034,-#_b2aeae537a054761341704408f3e6dec | p5@Cpn1 |
| 1.63e-22 | FFCP PHASE2:Mm9::chr19:44061023..44061034,-#_b2aeae537a054761341704408f3e6dec | p5@Cpn1 |
| 1.63e-22 | FFCP PHASE1:Mm9::chr19:46647912..46647926,+#_b2aeae537a054761341704408f3e6dec | p2@Sfxn2 |
| 1.63e-22 | FFCP PHASE2:Mm9::chr19:46647912..46647926,+#_b2aeae537a054761341704408f3e6dec | p2@Sfxn2 |
| 1.65e-22 | FFCP PHASE2:Mm9::chr18:65185637..65185658,+#_4eecf999eed4b71017916bd7edb6f2c7 | p19@Nedd4l |
| 1.65e-22 | FFCP PHASE1:Mm9::chr18:65185637..65185658,+#_4eecf999eed4b71017916bd7edb6f2c7 | p19@Nedd4l |
| 1.73e-22 | FFCP PHASE1:Hg19::chr2:227664522..227664544,-#_13df8e3250613bae42481899a4b5f16f | p1@IRS1 |
| 1.73e-22 | FFCP PHASE2:Hg19::chr2:227664522..227664544,-#_13df8e3250613bae42481899a4b5f16f | p1@IRS1 |
| 1.74e-22 | FFCP PHASE1:Hg19::chr4:69242026..69242064,+#_a6b453f537205d11e8e50bf2608fad87 | p2@MT1P2 |
| 1.74e-22 | FFCP PHASE2:Hg19::chr4:69242026..69242064,+#_a6b453f537205d11e8e50bf2608fad87 | p2@MT1P2 |
| 2.72e-22 | FFCP PHASE2:Hg19::chr15:96874063..96874074,+#_c6d8128abdc8a22977605db5cd6bdc15 | p10@NR2F2 |
| 2.72e-22 | FFCP PHASE1:Hg19::chr15:96874063..96874074,+#_c6d8128abdc8a22977605db5cd6bdc15 | p10@NR2F2 |
| 2.81e-22 | FFCP PHASE1:Mm9::chr5:97168683..97168705,-#_0b328666a93ae33075df6760d31ea904 | p@chr5:97168683..97168705, - |
| 2.81e-22 | FFCP PHASE2:Mm9::chr5:97168683..97168705,-#_0b328666a93ae33075df6760d31ea904 | p@chr5:97168683..97168705, - |
| 3.86e-22 | FFCP PHASE2:Hg19::chr19:18496957..18496977,+#_8fbe3e3c5b1326521a7c77c2b2808aa3 | p1@GDF15 |
| 3.86e-22 | FFCP PHASE1:Hg19::chr19:18496957..18496977,+#_8fbe3e3c5b1326521a7c77c2b2808aa3 | p1@GDF15 |
| 5.21e-22 | FFCP PHASE1:Hg19::chr15:96873921..96873946,+#_e718e22e3957e6a59d788671b32669f4 | p1@NR2F2 |
| 5.21e-22 | FFCP PHASE2:Hg19::chr15:96873921..96873946,+#_e718e22e3957e6a59d788671b32669f4 | p1@NR2F2 |
| 5.79e-22 | FFCP PHASE1:Hg19::chr17:38599693..38599708,+#_4df5e5ee2cc99aad542b23b81a07e2b0 | p1@IGFBP4 |
| 5.79e-22 | FFCP PHASE2:Hg19::chr17:38599693..38599708,+#_4df5e5ee2cc99aad542b23b81a07e2b0 | p1@IGFBP4 |
| 6.84e-22 | FFCP PHASE1:Hg19::chr7:93520056..93520072,-#_f787ffea23cf0fd3476e758ea014bf69 | p1@TFPI2 |
| 6.84e-22 | FFCP PHASE2:Hg19::chr7:93520056..93520072,-#_f787ffea23cf0fd3476e758ea014bf69 | p1@TFPI2 |
| 7.02e-22 | FFCP PHASE1:Mm9::chr19:34821684..34821709,-#_0a7bdb1aa0fdf574b8da313479c64cca | p5@Slc16a12 |
| 7.02e-22 | FFCP PHASE2:Mm9::chr19:34821684..34821709,-#_0a7bdb1aa0fdf574b8da313479c64cca | p5@Slc16a12 |
| 7.26e-22 | FFCP PHASE2:Hg19::chr22:19166241..19166257,-#_69e8b49aa74b544053a3c413f5b0b232 | p1@SLC25A1 |
| 7.26e-22 | FFCP PHASE1:Hg19::chr22:19166241..19166257,-#_69e8b49aa74b544053a3c413f5b0b232 | p1@SLC25A1 |
| 7.31e-22 | FFCP PHASE1:Hg19::chr20:34287290..34287356,+#_b260125b16a7f7696fe4ff6df734ef92 | p1@ROMO1 |
| 7.31e-22 | FFCP PHASE2:Hg19::chr20:34287290..34287356,+#_b260125b16a7f7696fe4ff6df734ef92 | p1@ROMO1 |
| 8.86e-22 | FFCP PHASE1:Mm9::chr12:77356231..77356244,+#_3515576e522f889272665e24af0f0edc | p2@Mthfd1 |
| 8.86e-22 | FFCP PHASE2:Mm9::chr12:77356231..77356244,+#_3515576e522f889272665e24af0f0edc | p2@Mthfd1 |
| 9.09e-22 | FFCP PHASE2:Hg19::chr16:3115299..3115312,+#_2554c06b0080bcf562f47a36cf794061 | p5@IL32 |
| 9.09e-22 | FFCP PHASE1:Hg19::chr16:3115299..3115312,+#_2554c06b0080bcf562f47a36cf794061 | p5@IL32 |
| 9.2e-22 | FFCP PHASE1:Mm9::chr15:96850371..96850403,-#_37a77db93ae2d1c41f4980e1f95d51db | p@chr15:96850371..96850403, - |
| 9.2e-22 | FFCP PHASE2:Mm9::chr15:96850371..96850403,-#_37a77db93ae2d1c41f4980e1f95d51db | p@chr15:96850371..96850403, - |
| 1.06e-21 | FFCP PHASE1:Hg19::chr7:72992865..72993012,-#_ba30e054f954a8567dc92b9beef1bbef | p1@TBL2 |
| 1.06e-21 | FFCP PHASE2:Hg19::chr7:72992865..72993012,-#_ba30e054f954a8567dc92b9beef1bbef | p1@TBL2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision that is the part of the body posterior to the head and anterior to the tail.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision which is the part of the body posterior to the head and anterior to the tail.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
