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MCL coexpression mm9:83: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.00495800642861131,0.0297328579645222,0.0344554604232177,0.0354506192162723,0.045789737265902,0.0120996027968625,0.00925306501865418,-0.00547574493211336,0.00611482986040399,0.00339025199714209,-0.00426095662046382,-0.0055633035746689,-0.00392348333007396,-0.0120892692032072,-0.00107855553051679,0.00624736111041594,-0.00610004810331905,-0.00486387295010817,-0.00423065299399161,-0.00171395932435079,0.0422113474247805,-0.00190173856798543,-0.00683237201873348,0.0277642208072003,0.0265494502489187,0.02297461033488,0.0215038525401543,0.0216768762645002,0.0187869107493114,0.0130410126614061,0.0142945246758502,0.00541536970097669,-0.0030918903665585,-0.0106384628333568,0.00632007685804485,0.00114914685221484,0.00585128584613436,-0.00352922220657136,-0.00420809637763872,-0.00956329542750457,-0.00531249545201763,-0.00582845784142411,-0.00603356141136049,0.00709904187632727,0.00461467810316374,0.00633451870336093,0.0148910852612207,0.003807201854654,0.0119564105579271,0.00823257052154168,0.0164596365875601,0.00782408037794964,-0.00554995974980117,-0.000740490124285134,-0.00185369095690413,0.0131511416108277,0.0102738251019361,0.00978640197019889,-0.000474434559404277,0.00196714315392755,0.00117259176107084,0.0158653075484126,0.0132756095193943,0.00108963383423333,0.00382932617917805,-0.000459114955265169,0.00722383076159864,0.00826066115141666,-0.0056041457287116,-0.00721206233574869,-0.00806229842399027,0.00442844623240062,0.00610607586099782,-0.00607459011341727,-0.00956901555722609,-0.00705489532813313,0.00602225891064981,0.00246285674784478,0.00620650635806263,-0.00408931164220081,-0.00471374095510901,-0.000321174189266334,0.0192877444447934,0.00310575208326068,0.00365062231398122,0.0019138729265752,0.0102325459476594,-0.00238960864866032,0.00280279241384128,0.0052102695926457,0.0289593225402046,0.0213714644950476,0.0713159073413525,0.0295191266330645,0.0455791190291188,0.0453718318506274,0.0545071440811405,-0.00163871901387418,-0.000620644784122339,-0.00225569399105354,0.00394152596040332,-0.00456054185375739,-0.00114154039440494,-0.009043564960521,0.0103481484971207,0.0079456550780234,0.00916721716327163,0.0554419197924025,0.0113778013637168,0.357434896496106,0.39796470311336,0.80742162523766,0.87111735822315,1.03141342134203,0.685266335721899,0.365283431410586,0.0631139869045414,0.0451384349448361,0.00472824107876357,0.00893399582598656,0.0114097352801076,0.0155785268559877,0.0158255900782765,0.00634625251721593,0.0134062007876933,0.0275212469197048,0.0023909810445397,0.00189831442862188,-0.00239101070150694,0.00510187363248068,-0.00123505261038711,-0.00474646282162308,0.00134510675925234,0.00178437460702535,0.012960541961015,0.00717510651856779,0.0148038868549454,0.0374858715855251,0.0317852991882323,0.0182967353291882,-0.00308653269930756,-0.00183935542712507,0.0027069207451665,0.00831457189434434,0.00816244693791706,0.0112157659976977,0.00803579443333464,0.0209792757719268,-0.00687775677578655,-0.00498423129728092,0.000673267397726154,0.000681765646157949,-0.00118278250590619,0.00720690803088291,0.00895338074264156,0.0537264624305803,-0.0028048323214526,0.000173455616586583,0.00286579331698832,0.00733281820643145,0.0128161567288805,0.00715471367355734,0.00165470599540993,0.00599220703876837,0.00907107931415,0.00736738557423102,0.00674154089864821,0.00724095829302876,0.00657947580028603,0.0224624628049235,0.0186936249108968,0.0182376840972988,0.0224813857564376,0.0244829609053887,0.00185896431852398,0.000585932415954194,0.0450512951590893,0.0182549131644678,0.00662280160303089,0.0126783794413752,0.000638684469329733,0.00595427341336342,0.00355211325491507,0.01097173794427,0.0220230625884137,0.0150386729747789,0.00881029752638798,0.00909021587308709,0.00578565616192679,0.0221461793473728,0.0217272846623533,0.0316262206138074,0.031565911275254,0.120981037744178,0.0257849613733841,0.0186860793120424,0.031911199304976,0.0271107451171157,0.016975910777252,0.0231056508252246,0.0270156155407948,0.0302818428319325,0.0379742761939068,0.00359289847479299,0.00359805773006481,0.00598529340931131,0.0116232444147695,0.0176363621439998,0.0291512067209992,0.0299664876117259,0.0642263801477603,0.0435827843887569,0.0790453890097475,0.0361088685605826,0.0407749055374941,0.0408552790487375,0.0347361510607765,0.0413032093589106,0.0205384034626549,0.00156652029741796,-0.000419251433834315,0.00686514247569557,0.00496451930098598,0.00621804835846535,0.0151479207925187,0.0182025816122945,0.00935354688275828,0.0112570791506787,0.00786813958629724,0.0188830673244774,0.0184350273946647,0.0270323214480095,-0.00679974790862387,0.000232531485878658,0.025221506364941,0.0191519490368696,0.0156589314139198,0.0204974890583914,0.0105402971181358,0.0290397415457059,0.0148235235660708,0.0123970386403726,0.0100245413976173,0.00984132652096995,0.0128295934349408,0.00871064407508901,0.00977921672095866,0.0135016270073335,0.0136357245400471,0.00557804453883098,0.121508443776593,0.03125225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transmembrane transporter activity;0.0352286013616755;53600,16527,63959,20538,11732!GO:0051536;iron-sulfur cluster binding;0.0352286013616755;226646,14148!GO:0051540;metal cluster binding;0.0352286013616755;226646,14148!GO:0019867;outer membrane;0.0352286013616755;53600,11732!GO:0016450;kappa DNA polymerase activity;0.0352286013616755;27015!GO:0030504;inorganic diphosphate transmembrane transporter activity;0.0352286013616755;11732!GO:0006810;transport;0.0352286013616755;14148,53600,63959,20538,20778,16527,171180,11732!GO:0005887;integral to plasma membrane;0.0352286013616755;16527,63959,20538,20778,11732!GO:0031226;intrinsic to plasma membrane;0.0352286013616755;16527,63959,20538,20778,11732!GO:0022857;transmembrane transporter activity;0.0352286013616755;53600,16527,63959,20538,11732!GO:0051234;establishment of localization;0.0352286013616755;14148,53600,63959,20538,20778,16527,171180,11732!GO:0022892;substrate-specific transporter activity;0.0447886004009721;53600,16527,63959,20538,11732!GO:0005886;plasma membrane;0.0447886004009721;20741,16527,171180,63959,20538,20778,11732!GO:0044459;plasma membrane part;0.0459744619974728;16527,171180,63959,20538,20778,11732!GO:0051179;localization;0.0459744619974728;14148,53600,63959,20538,20778,16527,171180,11732!GO:0043534;blood vessel endothelial cell migration;0.0459744619974728;20778!GO:0004523;ribonuclease H activity;0.0459744619974728;69724!GO:0019430;removal of superoxide radicals;0.0459744619974728;14088!GO:0015844;monoamine transport;0.0459744619974728;20538!|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002369!1.88e-56!7;UBERON:0006858!1.88e-56!7;UBERON:0003064!3.59e-28!14;UBERON:0005172!4.17e-10!49;UBERON:0005173!4.17e-10!49;UBERON:0002417!4.17e-10!49;UBERON:0000916!4.17e-10!49;UBERON:0005256!1.55e-08!45;UBERON:0003104!5.30e-08!61;UBERON:0009142!5.30e-08!61;UBERON:0009569!2.39e-07!66|tfbs_overrepresentation_for_novel_motifs=0.281264,0.00373442,0.20779,0.0624665,1.66905,0.338928,0.200135,1.58742,0.408104,0.0153596,0.0296476,0.848083,0.00256554,0.222527,1.91677,0,0.0496927,1.78281,0.611238,0.222215,0.278159,2.75733,0.0586297,0.706945,0.329934,0.00875526,0.757231,0.275258,0.0230967,0.328781,0.148269,0.101493,0.0116188,1.17415,0.115941,0.0546259,3.55207e-05,0.173503,1.29585,0.0242575,0.838958,0.0881425,0.457731,0.719533,0.13214,0.0245303,0.0240288,0.117399,1.44916,0.632874,0.252213,0.33772,1.37707,0.21192,3.64219,0.0640126,2.87639,0.158942,0.901674,0.23225,0.22428,0.214501,1.19732,0.111593,0.0719728,0.777251,0.377532,0.331572,0.218611,0.230668,0.00550665,0.839921,1.48737e-05,0.261938,0.000354688,0.0341439,1.87357,0.0213398,0.0798171,0.403174,0.719158,0.0569969,0.544011,0.0401326,0.156346,4.03446e-10,0.00644031,0.490062,0.171623,0.456858,0.465925,0.366543,0.496772,0.284855,0.00378043,0.590501,0.62098,0.269974,0.00416684,0.614537,0.132075,0.249071,0.0529438,0.973259,0.437637,0.0176257,0.0145872,0.0570241,0.011661,0.000260723,0.260192,0.0534755,0.540671,0.0722023,0.157003,0.672353,0.000290253,0.0657643,0.138071,0.328104,0.267534,0.204855,2.56289,0.455903,0.187265,0.208145,0.3461,0.257265,1.23629,0.297571,0.406284,0.726811,0.104441,1.39467,0.973275,0.102532,0.307558,0.0896717,0.142555,0.777107,0.431278,0.120695,0.476824,0.263116,0.241571,0.043595,0.734705,0.740947,0.776308,0.00764248,0.0311256,5.39386e-11,0.213383,0.324747,0.41242,0.616578,0.34009,0.973681,0.181518,0.00164511,0.147463,0.641502,0.0820783,0.0280234,0.414843,0.391311,0.34131,0.0955883,0.00880347|tfbs_overrepresentation_jaspar=MA0003.1;1.66178e-12,MA0004.1;0.193503,MA0006.1;0.0102537,MA0007.1;0.254949,MA0009.1;0.0286159,MA0014.1;2.12978e-08,MA0017.1;0.441715,MA0019.1;0.198102,MA0024.1;0.0206613,MA0025.1;1.667,MA0027.1;1.25061,MA0028.1;0.000748991,MA0029.1;0.958189,MA0030.1;0.403654,MA0031.1;0.0641635,MA0038.1;1.44043,MA0040.1;0.554409,MA0041.1;0.684585,MA0042.1;0.771083,MA0043.1;0.195118,MA0046.1;0.0364749,MA0048.1;4.01177e-06,MA0050.1;0.0514499,MA0051.1;0.296737,MA0052.1;0.0329659,MA0055.1;0.18593,MA0056.1;0,MA0057.1;0.00581521,MA0058.1;0.0512532,MA0059.1;0.0332567,MA0060.1;0.0429324,MA0061.1;0.340792,MA0063.1;0,MA0066.1;1.69101,MA0067.1;0.156321,MA0068.1;0.01925,MA0069.1;0.573492,MA0070.1;1.70433,MA0071.1;7.17913,MA0072.1;3.25871,MA0073.1;2.26617e-15,MA0074.1;0.307,MA0076.1;0.00617084,MA0077.1;0.259213,MA0078.1;1.74044,MA0081.1;0.333305,MA0083.1;0.0524113,MA0084.1;0.371772,MA0087.1;0.361971,MA0088.1;0.0394581,MA0089.1;0,MA0090.1;0.0377713,MA0091.1;1.90875,MA0092.1;0.763621,MA0093.1;0.146703,MA0095.1;0,MA0098.1;0,MA0100.1;0.279027,MA0101.1;0.0390575,MA0103.1;0.0819262,MA0105.1;0.0147885,MA0106.1;0.393246,MA0107.1;0.0733557,MA0108.2;0.00717027,MA0109.1;0,MA0111.1;0.0899976,MA0113.1;0.500566,MA0114.1;0.180747,MA0115.1;0.437355,MA0116.1;0.0388716,MA0117.1;0.384586,MA0119.1;1.82197,MA0122.1;0.186627,MA0124.1;0.129108,MA0125.1;0.316929,MA0130.1;0,MA0131.1;0.0881288,MA0132.1;0,MA0133.1;0,MA0135.1;0.0641042,MA0136.1;0.124744,MA0139.1;1.03414e-05,MA0140.1;0.278757,MA0141.1;8.12934,MA0142.1;0.527638,MA0143.1;0.55361,MA0144.1;0.191447,MA0145.1;0.273967,MA0146.1;0.012518,MA0147.1;0.0151895,MA0148.1;0.140733,MA0149.1;3.16357,MA0062.2;7.35173e-07,MA0035.2;0.837458,MA0039.2;2.05261e-09,MA0138.2;0.00483126,MA0002.2;0.5239,MA0137.2;0.108586,MA0104.2;0.00886776,MA0047.2;0.0783845,MA0112.2;1.066,MA0065.2;0.226253,MA0150.1;2.56801,MA0151.1;0,MA0152.1;0.276054,MA0153.1;0.0697816,MA0154.1;0.228056,MA0155.1;0.000965536,MA0156.1;0.00215053,MA0157.1;0.00866988,MA0158.1;0,MA0159.1;0.143677,MA0160.1;1.11851,MA0161.1;0,MA0162.1;1.14534e-09,MA0163.1;1.02769e-07,MA0164.1;0.5315,MA0080.2;0.180875,MA0018.2;0.784565,MA0099.2;3.0273,MA0079.2;0,MA0102.2;0.412273,MA0258.1;1.30878,MA0259.1;0.00527585,MA0442.1;0}}
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241100675518586,0.2905339096977,0.69531100883862,0.799626981580935,0.953677556865413,0.595465101239466,0.274080718023093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.046982063026719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0180278768806388,0.0458845493266254,0.0677982110636083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0022891;substrate-specific transmembrane transporter activity;0.0352286013616755;53600,16527,63959,20538,11732!GO:0051536;iron-sulfur cluster binding;0.0352286013616755;226646,14148!GO:0051540;metal cluster binding;0.0352286013616755;226646,14148!GO:0019867;outer membrane;0.0352286013616755;53600,11732!GO:0016450;kappa DNA polymerase activity;0.0352286013616755;27015!GO:0030504;inorganic diphosphate transmembrane transporter activity;0.0352286013616755;11732!GO:0006810;transport;0.0352286013616755;14148,53600,63959,20538,20778,16527,171180,11732!GO:0005887;integral to plasma membrane;0.0352286013616755;16527,63959,20538,20778,11732!GO:0031226;intrinsic to plasma membrane;0.0352286013616755;16527,63959,20538,20778,11732!GO:0022857;transmembrane transporter activity;0.0352286013616755;53600,16527,63959,20538,11732!GO:0051234;establishment of localization;0.0352286013616755;14148,53600,63959,20538,20778,16527,171180,11732!GO:0022892;substrate-specific transporter activity;0.0447886004009721;53600,16527,63959,20538,11732!GO:0005886;plasma membrane;0.0447886004009721;20741,16527,171180,63959,20538,20778,11732!GO:0044459;plasma membrane part;0.0459744619974728;16527,171180,63959,20538,20778,11732!GO:0051179;localization;0.0459744619974728;14148,53600,63959,20538,20778,16527,171180,11732!GO:0043534;blood vessel endothelial cell migration;0.0459744619974728;20778!GO:0004523;ribonuclease H activity;0.0459744619974728;69724!GO:0019430;removal of superoxide radicals;0.0459744619974728;14088!GO:0015844;monoamine transport;0.0459744619974728;20538!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002369!1.88e-56!7;UBERON:0006858!1.88e-56!7;UBERON:0003064!3.59e-28!14;UBERON:0005172!4.17e-10!49;UBERON:0005173!4.17e-10!49;UBERON:0002417!4.17e-10!49;UBERON:0000916!4.17e-10!49;UBERON:0005256!1.55e-08!45;UBERON:0003104!5.30e-08!61;UBERON:0009142!5.30e-08!61;UBERON:0009569!2.39e-07!66
|tfbs_overrepresentation_for_novel_motifs=0.281264,0.00373442,0.20779,0.0624665,1.66905,0.338928,0.200135,1.58742,0.408104,0.0153596,0.0296476,0.848083,0.00256554,0.222527,1.91677,0,0.0496927,1.78281,0.611238,0.222215,0.278159,2.75733,0.0586297,0.706945,0.329934,0.00875526,0.757231,0.275258,0.0230967,0.328781,0.148269,0.101493,0.0116188,1.17415,0.115941,0.0546259,3.55207e-05,0.173503,1.29585,0.0242575,0.838958,0.0881425,0.457731,0.719533,0.13214,0.0245303,0.0240288,0.117399,1.44916,0.632874,0.252213,0.33772,1.37707,0.21192,3.64219,0.0640126,2.87639,0.158942,0.901674,0.23225,0.22428,0.214501,1.19732,0.111593,0.0719728,0.777251,0.377532,0.331572,0.218611,0.230668,0.00550665,0.839921,1.48737e-05,0.261938,0.000354688,0.0341439,1.87357,0.0213398,0.0798171,0.403174,0.719158,0.0569969,0.544011,0.0401326,0.156346,4.03446e-10,0.00644031,0.490062,0.171623,0.456858,0.465925,0.366543,0.496772,0.284855,0.00378043,0.590501,0.62098,0.269974,0.00416684,0.614537,0.132075,0.249071,0.0529438,0.973259,0.437637,0.0176257,0.0145872,0.0570241,0.011661,0.000260723,0.260192,0.0534755,0.540671,0.0722023,0.157003,0.672353,0.000290253,0.0657643,0.138071,0.328104,0.267534,0.204855,2.56289,0.455903,0.187265,0.208145,0.3461,0.257265,1.23629,0.297571,0.406284,0.726811,0.104441,1.39467,0.973275,0.102532,0.307558,0.0896717,0.142555,0.777107,0.431278,0.120695,0.476824,0.263116,0.241571,0.043595,0.734705,0.740947,0.776308,0.00764248,0.0311256,5.39386e-11,0.213383,0.324747,0.41242,0.616578,0.34009,0.973681,0.181518,0.00164511,0.147463,0.641502,0.0820783,0.0280234,0.414843,0.391311,0.34131,0.0955883,0.00880347
|tfbs_overrepresentation_jaspar=MA0003.1;1.66178e-12,MA0004.1;0.193503,MA0006.1;0.0102537,MA0007.1;0.254949,MA0009.1;0.0286159,MA0014.1;2.12978e-08,MA0017.1;0.441715,MA0019.1;0.198102,MA0024.1;0.0206613,MA0025.1;1.667,MA0027.1;1.25061,MA0028.1;0.000748991,MA0029.1;0.958189,MA0030.1;0.403654,MA0031.1;0.0641635,MA0038.1;1.44043,MA0040.1;0.554409,MA0041.1;0.684585,MA0042.1;0.771083,MA0043.1;0.195118,MA0046.1;0.0364749,MA0048.1;4.01177e-06,MA0050.1;0.0514499,MA0051.1;0.296737,MA0052.1;0.0329659,MA0055.1;0.18593,MA0056.1;0,MA0057.1;0.00581521,MA0058.1;0.0512532,MA0059.1;0.0332567,MA0060.1;0.0429324,MA0061.1;0.340792,MA0063.1;0,MA0066.1;1.69101,MA0067.1;0.156321,MA0068.1;0.01925,MA0069.1;0.573492,MA0070.1;1.70433,MA0071.1;7.17913,MA0072.1;3.25871,MA0073.1;2.26617e-15,MA0074.1;0.307,MA0076.1;0.00617084,MA0077.1;0.259213,MA0078.1;1.74044,MA0081.1;0.333305,MA0083.1;0.0524113,MA0084.1;0.371772,MA0087.1;0.361971,MA0088.1;0.0394581,MA0089.1;0,MA0090.1;0.0377713,MA0091.1;1.90875,MA0092.1;0.763621,MA0093.1;0.146703,MA0095.1;0,MA0098.1;0,MA0100.1;0.279027,MA0101.1;0.0390575,MA0103.1;0.0819262,MA0105.1;0.0147885,MA0106.1;0.393246,MA0107.1;0.0733557,MA0108.2;0.00717027,MA0109.1;0,MA0111.1;0.0899976,MA0113.1;0.500566,MA0114.1;0.180747,MA0115.1;0.437355,MA0116.1;0.0388716,MA0117.1;0.384586,MA0119.1;1.82197,MA0122.1;0.186627,MA0124.1;0.129108,MA0125.1;0.316929,MA0130.1;0,MA0131.1;0.0881288,MA0132.1;0,MA0133.1;0,MA0135.1;0.0641042,MA0136.1;0.124744,MA0139.1;1.03414e-05,MA0140.1;0.278757,MA0141.1;8.12934,MA0142.1;0.527638,MA0143.1;0.55361,MA0144.1;0.191447,MA0145.1;0.273967,MA0146.1;0.012518,MA0147.1;0.0151895,MA0148.1;0.140733,MA0149.1;3.16357,MA0062.2;7.35173e-07,MA0035.2;0.837458,MA0039.2;2.05261e-09,MA0138.2;0.00483126,MA0002.2;0.5239,MA0137.2;0.108586,MA0104.2;0.00886776,MA0047.2;0.0783845,MA0112.2;1.066,MA0065.2;0.226253,MA0150.1;2.56801,MA0151.1;0,MA0152.1;0.276054,MA0153.1;0.0697816,MA0154.1;0.228056,MA0155.1;0.000965536,MA0156.1;0.00215053,MA0157.1;0.00866988,MA0158.1;0,MA0159.1;0.143677,MA0160.1;1.11851,MA0161.1;0,MA0162.1;1.14534e-09,MA0163.1;1.02769e-07,MA0164.1;0.5315,MA0080.2;0.180875,MA0018.2;0.784565,MA0099.2;3.0273,MA0079.2;0,MA0102.2;0.412273,MA0258.1;1.30878,MA0259.1;0.00527585,MA0442.1;0
}}

Latest revision as of 14:39, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:116036017..116036035,-p@chr11:116036017..116036035
-
Mm9::chr11:116036045..116036108,-p@chr11:116036045..116036108
-
Mm9::chr11:116036131..116036135,-p@chr11:116036131..116036135
-
Mm9::chr11:116036168..116036181,-p@chr11:116036168..116036181
-
Mm9::chr11:119006433..119006437,+p@chr11:119006433..119006437
+
Mm9::chr11:119931983..119932000,-p@chr11:119931983..119932000
-
Mm9::chr11:22920346..22920355,+p10@Fam161a
Mm9::chr11:22920464..22920486,+p3@Fam161a
Mm9::chr11:4629861..4629870,+p@chr11:4629861..4629870
+
Mm9::chr11:4629873..4629891,+p@chr11:4629873..4629891
+
Mm9::chr11:4629892..4629897,+p@chr11:4629892..4629897
+
Mm9::chr11:4629901..4629910,+p@chr11:4629901..4629910
+
Mm9::chr11:59623609..59623635,+p1@uc007jez.1
Mm9::chr11:70532446..70532453,+p@chr11:70532446..70532453
+
Mm9::chr11:84991536..84991543,+p@chr11:84991536..84991543
+
Mm9::chr11:86443743..86443748,+p@chr11:86443743..86443748
+
Mm9::chr11:88355137..88355148,-p@chr11:88355137..88355148
-
Mm9::chr12:106057444..106057468,+p@chr12:106057444..106057468
+
Mm9::chr12:33409576..33409586,+p@chr12:33409576..33409586
+
Mm9::chr12:33409587..33409599,+p@chr12:33409587..33409599
+
Mm9::chr12:77710398..77710404,-p@chr12:77710398..77710404
-
Mm9::chr12:77713634..77713647,-p@chr12:77713634..77713647
-
Mm9::chr12:77713649..77713656,-p@chr12:77713649..77713656
-
Mm9::chr12:77713665..77713688,-p@chr12:77713665..77713688
-
Mm9::chr12:77713695..77713715,-p@chr12:77713695..77713715
-
Mm9::chr12:81064726..81064730,+p@chr12:81064726..81064730
+
Mm9::chr13:100181875..100181889,-p@chr13:100181875..100181889
-
Mm9::chr13:63426325..63426329,-p17@Fancc
Mm9::chr13:92036172..92036183,-p@chr13:92036172..92036183
-
Mm9::chr13:95946641..95946647,+p@chr13:95946641..95946647
+
Mm9::chr13:97312509..97312522,-p3@Polk
Mm9::chr14:33015494..33015508,-p2@Timm23
Mm9::chr14:56387663..56387674,+p@chr14:56387663..56387674
+
Mm9::chr14:78274860..78274874,-p2@Dnajc15
Mm9::chr14:78274900..78274915,-p3@Dnajc15
Mm9::chr14:78274934..78274941,-p4@Dnajc15
Mm9::chr15:100029070..100029085,+p@chr15:100029070..100029085
+
Mm9::chr15:27501127..27501149,+p11@Ank
Mm9::chr15:74662523..74662531,-p@chr15:74662523..74662531
-
Mm9::chr15:74665659..74665667,+p@chr15:74665659..74665667
+
Mm9::chr15:74665817..74665834,+p@chr15:74665817..74665834
+
Mm9::chr15:74666224..74666235,+p@chr15:74666224..74666235
+
Mm9::chr15:75494512..75494521,-p@chr15:75494512..75494521
-
Mm9::chr15:75494529..75494571,-p@chr15:75494529..75494571
-
Mm9::chr15:75494574..75494596,-p@chr15:75494574..75494596
-
Mm9::chr15:75494598..75494605,-p@chr15:75494598..75494605
-
Mm9::chr15:75494613..75494620,-p@chr15:75494613..75494620
-
Mm9::chr15:84597304..84597312,+p@chr15:84597304..84597312
+
Mm9::chr16:5227918..5227923,-p@chr16:5227918..5227923
-
Mm9::chr17:34866332..34866342,-p2@C4b
p2@LOC675521
Mm9::chr17:34866825..34866849,-p@chr17:34866825..34866849
-
Mm9::chr17:34938318..34938336,-p@chr17:34938318..34938336
-
Mm9::chr17:34938364..34938400,-p@chr17:34938364..34938400
-
Mm9::chr17:34947033..34947054,-p1@ENSMUST00000160657
Mm9::chr17:34947502..34947541,-p@chr17:34947502..34947541
-
Mm9::chr17:4281603..4281612,-p@chr17:4281603..4281612
-
Mm9::chr17:45729518..45729530,-p26@Slc29a1
Mm9::chr17:46364719..46364729,+p@chr17:46364719..46364729
+
Mm9::chr17:46364752..46364757,+p@chr17:46364752..46364757
+
Mm9::chr17:46364776..46364779,+p@chr17:46364776..46364779
+
Mm9::chr17:80049640..80049644,+p@chr17:80049640..80049644
+
Mm9::chr18:12727769..12727781,+p@chr18:12727769..12727781
+
Mm9::chr19:17469280..17469330,+p@chr19:17469280..17469330
+
Mm9::chr19:21249341..21249350,-p@chr19:21249341..21249350
-
Mm9::chr19:21249362..21249373,-p@chr19:21249362..21249373
-
Mm9::chr19:4477567..4477592,-p2@Syt12
Mm9::chr1:135249087..135249106,+p@chr1:135249087..135249106
+
Mm9::chr1:153900342..153900361,-p@chr1:153900342..153900361
-
Mm9::chr1:173171176..173171190,-p@chr1:173171176..173171190
-
Mm9::chr1:174164754..174164763,-p@chr1:174164754..174164763
-
Mm9::chr1:174164766..174164786,-p@chr1:174164766..174164786
-
Mm9::chr1:55187939..55187952,+p4@Mob4
Mm9::chr1:55188161..55188175,+p3@Mob4
Mm9::chr1:55261747..55261756,+p@chr1:55261747..55261756
+
Mm9::chr1:64984382..64984395,-p@chr1:64984382..64984395
-
Mm9::chr1:64984398..64984410,-p@chr1:64984398..64984410
-
Mm9::chr1:73951774..73951810,-p@chr1:73951774..73951810
-
Mm9::chr1:93205195..93205204,+p@chr1:93205195..93205204
+
Mm9::chr1:93205210..93205219,+p@chr1:93205210..93205219
+
Mm9::chr1:93379594..93379607,+p@chr1:93379594..93379607
+
Mm9::chr2:167686764..167686766,-p@chr2:167686764..167686766
-
Mm9::chr2:25568292..25568300,-p@chr2:25568292..25568300
-
Mm9::chr2:38568356..38568381,-p@chr2:38568356..38568381
-
Mm9::chr3:10346035..10346039,-p4@Zfand1
Mm9::chr3:10346105..10346125,-p2@Zfand1
Mm9::chr3:131301327..131301332,+p@chr3:131301327..131301332
+
Mm9::chr3:131301390..131301407,+p@chr3:131301390..131301407
+
Mm9::chr3:137940712..137940721,+p@chr3:137940712..137940721
+
Mm9::chr3:137940729..137940741,+p@chr3:137940729..137940741
+
Mm9::chr3:27504624..27504639,-p@chr3:27504624..27504639
-
Mm9::chr3:98656478..98656489,+p@chr3:98656478..98656489
+
Mm9::chr3:98685941..98685959,-p@chr3:98685941..98685959
-
Mm9::chr4:107029273..107029290,+p@chr4:107029273..107029290
+
Mm9::chr4:125024195..125024205,-p@chr4:125024195..125024205
-
Mm9::chr4:125024207..125024219,-p@chr4:125024207..125024219
-
Mm9::chr4:125024230..125024240,-p@chr4:125024230..125024240
-
Mm9::chr4:134452224..134452234,-p@chr4:134452224..134452234
-
Mm9::chr4:134452244..134452255,-p@chr4:134452244..134452255
-
Mm9::chr4:134453151..134453160,-p@chr4:134453151..134453160
-
Mm9::chr4:137273245..137273270,+p@chr4:137273245..137273270
+
Mm9::chr4:141313262..141313310,+p@chr4:141313262..141313310
+
Mm9::chr4:65069010..65069019,+p@chr4:65069010..65069019
+
Mm9::chr4:81007367..81007404,-p@chr4:81007367..81007404
-
Mm9::chr5:122698093..122698102,-p@chr5:122698093..122698102
-
Mm9::chr5:125757526..125757535,-p@chr5:125757526..125757535
-
Mm9::chr5:125774432..125774438,+p@chr5:125774432..125774438
+
Mm9::chr5:125780779..125780797,+p@chr5:125780779..125780797
+
Mm9::chr5:125784661..125784689,-p4@Scarb1
Mm9::chr5:125821381..125821397,-p1@Scarb1
Mm9::chr5:21407397..21407419,+p@chr5:21407397..21407419
+
Mm9::chr5:30926210..30926217,+p@chr5:30926210..30926217
+
Mm9::chr6:147192306..147192315,-p1@ENSMUST00000153521
Mm9::chr6:147192316..147192328,-p2@ENSMUST00000153786
Mm9::chr6:147192336..147192358,-p1@ENSMUST00000153786
Mm9::chr6:34362117..34362128,+p3@Akr1b7
Mm9::chr6:34362353..34362373,+p1@Akr1b7
Mm9::chr6:34365415..34365426,-p@chr6:34365415..34365426
-
Mm9::chr6:34365416..34365425,+p@chr6:34365416..34365425
+
Mm9::chr6:34365453..34365458,-p@chr6:34365453..34365458
-
Mm9::chr6:34369393..34369409,+p@chr6:34369393..34369409
+
Mm9::chr6:34369431..34369445,-p@chr6:34369431..34369445
-
Mm9::chr6:34369461..34369468,+p@chr6:34369461..34369468
+
Mm9::chr6:34369472..34369483,-p@chr6:34369472..34369483
-
Mm9::chr6:34373020..34373038,-p@chr6:34373020..34373038
-
Mm9::chr6:34373028..34373046,+p@chr6:34373028..34373046
+
Mm9::chr6:34373050..34373065,+p@chr6:34373050..34373065
+
Mm9::chr6:34373075..34373091,+p@chr6:34373075..34373091
+
Mm9::chr6:34373114..34373138,-p@chr6:34373114..34373138
-
Mm9::chr6:37093225..37093246,+p@chr6:37093225..37093246
+
Mm9::chr6:42347324..42347334,+p@chr6:42347324..42347334
+
Mm9::chr6:72311419..72311433,-p5@Rnf181
Mm9::chr7:125994287..125994298,-p@chr7:125994287..125994298
-
Mm9::chr7:134110117..134110151,+p@chr7:134110117..134110151
+
Mm9::chr7:134111083..134111111,+p7@Sez6l2
Mm9::chr7:134835438..134835498,+p@chr7:134835438..134835498
+
Mm9::chr7:150650125..150650135,-p@chr7:150650125..150650135
-
Mm9::chr8:122526620..122526641,+p2@Crispld2
Mm9::chr8:26925679..26925686,+p@chr8:26925679..26925686
+
Mm9::chr8:59096282..59096294,+p@chr8:59096282..59096294
+
Mm9::chr8:87490060..87490068,-p8@Rnaseh2a
Mm9::chr8:87490652..87490665,+p@chr8:87490652..87490665
+
Mm9::chr8:87490682..87490709,+p@chr8:87490682..87490709
+
Mm9::chr8:95484471..95484483,+p3@Slc6a2
Mm9::chr8:95484499..95484515,+p2@Slc6a2
Mm9::chr9:102802533..102802540,+p@chr9:102802533..102802540
+
Mm9::chr9:51751476..51751480,-p@chr9:51751476..51751480
-
Mm9::chr9:51753948..51753951,-p@chr9:51753948..51753951
-
Mm9::chr9:51771653..51771668,-p1@Fdx1
Mm9::chr9:51782912..51782917,-p@chr9:51782912..51782917
-
Mm9::chr9:57872928..57872961,-p@chr9:57872928..57872961
-
Mm9::chr9:57874758..57874769,+p@chr9:57874758..57874769
+
Mm9::chr9:62215838..62215847,+p@chr9:62215838..62215847
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0022891substrate-specific transmembrane transporter activity0.0352286013616755
GO:0051536iron-sulfur cluster binding0.0352286013616755
GO:0051540metal cluster binding0.0352286013616755
GO:0019867outer membrane0.0352286013616755
GO:0016450kappa DNA polymerase activity0.0352286013616755
GO:0030504inorganic diphosphate transmembrane transporter activity0.0352286013616755
GO:0006810transport0.0352286013616755
GO:0005887integral to plasma membrane0.0352286013616755
GO:0031226intrinsic to plasma membrane0.0352286013616755
GO:0022857transmembrane transporter activity0.0352286013616755
GO:0051234establishment of localization0.0352286013616755
GO:0022892substrate-specific transporter activity0.0447886004009721
GO:0005886plasma membrane0.0447886004009721
GO:0044459plasma membrane part0.0459744619974728
GO:0051179localization0.0459744619974728
GO:0043534blood vessel endothelial cell migration0.0459744619974728
GO:0004523ribonuclease H activity0.0459744619974728
GO:0019430removal of superoxide radicals0.0459744619974728
GO:0015844monoamine transport0.0459744619974728



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
adrenal gland1.88e-567
adrenal/interrenal gland1.88e-567
intermediate mesoderm3.59e-2814
abdomen element4.17e-1049
abdominal segment element4.17e-1049
abdominal segment of trunk4.17e-1049
abdomen4.17e-1049
trunk mesenchyme1.55e-0845
mesenchyme5.30e-0861
entire embryonic mesenchyme5.30e-0861
subdivision of trunk2.39e-0766


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.66178e-12
MA0004.10.193503
MA0006.10.0102537
MA0007.10.254949
MA0009.10.0286159
MA0014.12.12978e-08
MA0017.10.441715
MA0019.10.198102
MA0024.10.0206613
MA0025.11.667
MA0027.11.25061
MA0028.10.000748991
MA0029.10.958189
MA0030.10.403654
MA0031.10.0641635
MA0038.11.44043
MA0040.10.554409
MA0041.10.684585
MA0042.10.771083
MA0043.10.195118
MA0046.10.0364749
MA0048.14.01177e-06
MA0050.10.0514499
MA0051.10.296737
MA0052.10.0329659
MA0055.10.18593
MA0056.10
MA0057.10.00581521
MA0058.10.0512532
MA0059.10.0332567
MA0060.10.0429324
MA0061.10.340792
MA0063.10
MA0066.11.69101
MA0067.10.156321
MA0068.10.01925
MA0069.10.573492
MA0070.11.70433
MA0071.17.17913
MA0072.13.25871
MA0073.12.26617e-15
MA0074.10.307
MA0076.10.00617084
MA0077.10.259213
MA0078.11.74044
MA0081.10.333305
MA0083.10.0524113
MA0084.10.371772
MA0087.10.361971
MA0088.10.0394581
MA0089.10
MA0090.10.0377713
MA0091.11.90875
MA0092.10.763621
MA0093.10.146703
MA0095.10
MA0098.10
MA0100.10.279027
MA0101.10.0390575
MA0103.10.0819262
MA0105.10.0147885
MA0106.10.393246
MA0107.10.0733557
MA0108.20.00717027
MA0109.10
MA0111.10.0899976
MA0113.10.500566
MA0114.10.180747
MA0115.10.437355
MA0116.10.0388716
MA0117.10.384586
MA0119.11.82197
MA0122.10.186627
MA0124.10.129108
MA0125.10.316929
MA0130.10
MA0131.10.0881288
MA0132.10
MA0133.10
MA0135.10.0641042
MA0136.10.124744
MA0139.11.03414e-05
MA0140.10.278757
MA0141.18.12934
MA0142.10.527638
MA0143.10.55361
MA0144.10.191447
MA0145.10.273967
MA0146.10.012518
MA0147.10.0151895
MA0148.10.140733
MA0149.13.16357
MA0062.27.35173e-07
MA0035.20.837458
MA0039.22.05261e-09
MA0138.20.00483126
MA0002.20.5239
MA0137.20.108586
MA0104.20.00886776
MA0047.20.0783845
MA0112.21.066
MA0065.20.226253
MA0150.12.56801
MA0151.10
MA0152.10.276054
MA0153.10.0697816
MA0154.10.228056
MA0155.10.000965536
MA0156.10.00215053
MA0157.10.00866988
MA0158.10
MA0159.10.143677
MA0160.11.11851
MA0161.10
MA0162.11.14534e-09
MA0163.11.02769e-07
MA0164.10.5315
MA0080.20.180875
MA0018.20.784565
MA0099.23.0273
MA0079.20
MA0102.20.412273
MA0258.11.30878
MA0259.10.00527585
MA0442.10
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