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<html>
{{Known_motif|id=1}}
<title>known motifs</title>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
</style>
<script type="text/javascript">
 
var oTable;
/* Formating function for row details */
function fnFormatDetails ( nTr )
{
    var aData = oTable.fnGetData( nTr );
    var sOut  = '<table cellpadding="5" cellspacing="0" border="0" style="padding-left:50px;">';
    var submotifs = aData[0];
    var submotifs_array =submotifs .split(",")
sOut += '<thead><tr><th scope="col">motif_name</th></tr></thead>';
    for (var i in submotifs_array ) {
sOut += '<tr>';
      var submotifs_details =submotifs_array [i].split(":")
 
      for(var i in submotifs_details){
          sOut += '<td>'+submotifs_details[i]+'</td>';
        }
      sOut += '</tr>';
    }
 
    /* sOut += '<tr><td>Extra info:</td><td>And any further details here (images etc)</td></tr>';*/
    sOut += '</table>'; 
    return sOut;
}
$(document).ready(function() {
    oTable = $('#example').dataTable( {
        "aaData": [
    { "0":"HOCOMOCO:ZFHX3_f1,HOCOMOCO:ARI3A_f1,HOCOMOCO:HXD9_f1,KNOWN_HOCOMOCO:PDX1_do,KNOWN_HOCOMOCO:HXD4_f1,KNOWN_HOCOMOCO:HXC8_f1,KNOWN_HOCOMOCO:LHX3_f1,KNOWN_HOCOMOCO:PO4F2_si,KNOWN_JASPAR:Nobox;MA0125.1,KNOWN_JASPAR:Nkx2-5;MA0063.1"
    }
        ], 
          "aoColumns": [
            { "sTitle": ""},
            { "sTitle": "motif name", "mRender": function ( data, type, full ) {
        return '<a href=/resource_browser/User:Serkan/test2/'+data+'>'+data+'</a>';
      } }
        ]
       
     
    } ); 
} );
$('#example tbody td img').live( 'click', function () {
        var nTr = $(this).parents('tr')[0];
        if ( oTable.fnIsOpen(nTr) )
        {
            /* This row is already open - close it */
this.src ="/resource_browser/extensions/SemanticMediaWiki/skins/images/info.png";
            oTable.fnClose( nTr );
        }
        else
        {
            /* Open this row */
            this.src ="/resource_browser/extensions/SemanticMediaWiki/skins/images/info.png";
            oTable.fnOpen( nTr, fnFormatDetails(nTr), 'details' );
        }
    } );
</script>
 
</head>
<body>
<table cellpadding="0" cellspacing="0" border="0" class="display" id="example"></table>
     
</body>
 
</html>

Latest revision as of 11:57, 22 April 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :{{{name}}}
  • db  :{{{representative_motif_db}}}
  • Id  :{{{representative_motif_id}}}
  • name  :{{{representative_motif_name}}}
  • score  :{{{score}}}"{{{score}}}" is not a number.
  • External refs:
EntrezGene:{{{entrez_gene_id}}}
UniProt:{{{entrez_gene_id}}}

  • Internal refs:
[[EntrezGene:{{{entrez_gene_id}}}]]


Motif matrix
{{{PWM}}}

Sub Motif Members

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