NonredundantMotifs:35: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=7545
|motif_cluster_2013_march_motif_members= /SWISSREGULON:GLI1..3.p2~ZIC1..3.p2 /HOMER:GLI3_GLI3-ChIP-Chip /HOCOMOCO:ZIC3_f1~ZIC1_f1~GLI1_...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;1.5705289672544112;4.386649874055439;17.275818639798516;10.01889168765744!2;2.92443324937028;1.9496221662468536;28.377833753148682;0.0!3;0.0;0.9748110831234268;31.302267002518953;0.9748110831234268!4;0.0;1.9496221662468536;31.302267002518953;0.0!5;9.964735516372807;0.9748110831234268;5.848866498740574;16.463476070528994!6;3.8992443324936934;0.0;25.45340050377838;3.8992443324936934!7;1.9496221662468536;7.7984886649874205;23.503778337531532;0.0!8;1.0831234256926963;2.92443324937028;8.881612090680115;20.362720403022724!9;7.1756926952141225;14.757556675063004;9.12531486146097;2.1933249370277124 | |||
|entrez_gene_id=7545 | |entrez_gene_id=7545 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON: | |motif_cluster_2013_march_motif_members= /HOCOMOCO:ZIC2_f1~ZIC1_f1~ZIC3_f1~GLI1_f1~GLI2_f1~GLI3_si /HOMER:GLI3_GLI3-ChIP-Chip /SWISSREGULON:ZIC1..3.p2~GLI1..3.p2 /UNIPROBE:Zbtb7b_secondary;SCI09 | ||
|name= | |name=non-redundant35 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=ZIC1_f1 | |representative_motif_id=ZIC1_f1 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant35
- db :HOCOMOCO
- Id :ZIC1_f1
- name :
- score :1.7432568115672091
- External refs:
- Internal refs:
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Sub Motif Members
