NonredundantMotifs:54: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:POU5F1_SOX2{dimer}.p2 /JASPAR:MA0142.1;Pou5f1~MA0143.1;Sox2 /HOCOMOCO:SOX2_f1~PO5F1_...") |
m (Autoedit moved page NonredundantMotifs:Motif54 to NonredundantMotifs:54 without leaving a redirect: NSchange) |
||
| (6 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!01;18;44;2;44!02;58;1;3;46!03;0;2;4;102!04;12;0;3;93!05;12;30;58;8!06;33;2;3;70!07;32;30;10;36!08;96;0;4;8!09;3;1;0;104!10;1;0;96;11!11;4;69;9;26!12;86;2;0;20!13;77;3;21;7!14;98;4;6;0!15;17;16;10;65 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=POU5F1_SOX2(dimer) | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PO3F1_f1~PO5F1_do~SOX2_f1 /JASPAR:MA0143.1;Sox2~MA0142.1;Pou5f1 /SWISSREGULON:POU5F1_SOX2(dimer).p2 | ||
|name=non-redundant54 | |||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=POU5F1_SOX2 | |representative_motif_id=POU5F1_SOX2(dimer).p2 | ||
|representative_motif_name= | |representative_motif_name=POU5F1_SOX2(dimer) | ||
|score=0.08598973982506294 | |score=0.08598973982506294 | ||
|uniprot_entry_name= | |uniprot_entry_name=POU5F1_SOX2(dimer) | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant54
- db :SWISSREGULON
- Id :POU5F1_SOX2(dimer).p2
- name :POU5F1_SOX2(dimer)
- score :0.08598973982506294
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
