NonredundantMotifs:83: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=5916
|motif_cluster_2013_march_motif_members= /JASPAR:MA0159.1;RXR::RAR_DR5 /HOCOMOCO:RARA_f2~RARG_do
|name=known83
|representative_motif_d...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;67.7808040271798;1.9706190330777424;46.594561776516336;4.654015163226166!2;0.0;0.41928064533569015;119.07130903145557;1.50941032320849!3;5.924426760444315;3.5219574208198017;77.60454078924587;33.949075029489876!4;5.7022167765653915;0.8385612906713803;9.949520955666939;104.50970097709619!5;0.7547051616042425;88.77832619669711;21.96608673468982;9.500881907008763!6;106.18682355843885;0.0;13.303766118352401;1.50941032320849!7;27.47123284979842;36.942756353484775;26.016320252334598;30.56969054438221!8;20.984952508306378;46.13757214754736;39.73514793512246;14.142327409023792!9;33.56337186837699;23.026858009240172;48.22975629332561;16.18001382905735!10;53.62168787604448;12.213636440479716;38.70373506389457;16.460940619581226!11;29.789846060355853;30.26362443143611;52.2254920852257;8.72103742298236!12;71.78489039939059;15.928445441855935;21.798374476555544;11.48828968219791!13;8.775535148727005;13.55533450555382;93.83483326314744;4.834297082571521!14;12.075282585667871;6.595275792981415;73.15594686778728;29.173494753563425!15;16.880221264916923;13.219909989285263;17.605568023198714;73.2943007225991!16;11.899175956477901;84.21656153359375;16.20097786132405;8.683284648604165!17;87.72590550245758;10.104663552590129;13.848830957288865;9.320599987663396 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0159.1;RXR:: | |entrez_gene_id=5914 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:RARG_do~RARA_f2 /JASPAR:MA0159.1;RXR::RAR_DR5 | ||
|name=non-redundant83 | |||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id= | |representative_motif_id=RARA_f2 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=0. | |score=0.40599813945122243 | ||
|uniprot_entry_name= | |uniprot_entry_name=RARA_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant83
- db :HOCOMOCO
- Id :RARA_f2
- name :
- score :0.40599813945122243
- External refs:
- Internal refs:
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Sub Motif Members
