NonredundantMotifs:121: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=8521
|motif_cluster_2013_march_motif_members= /HOCOMOCO:GCM1_f1 /UNIPROBE:Gcm1_primary;SCI09
|name=known121
|representative_motif_db=UNIPRO...") |
m (Autoedit moved page NonredundantMotifs:Motif121 to NonredundantMotifs:121 without leaving a redirect: NSchange) |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.251681069561104;0.208273402702388;0.178525465436638;0.36152006229987!2;0.323865334035595;0.334303016731432;0.205542325777833;0.13628932345514!3;0.30808401815191;0.277004132087553;0.326202749970933;0.0887090997896037!4;0.280609245904245;0.171416370918603;0.168917658130222;0.37905672504693!5;0.734440750185428;0.0312568938223699;0.211473133565692;0.0228292224265097!6;0.00618734015673875;0.990281178704857;0.00105171497537268;0.00247976616303172!7;0.00581932973061003;0.990856180865086;0.00149812379283634;0.00182636561146783!8;0.0438380468490952;0.936501694946557;0.00155026626298767;0.0181099919413597!9;0.022607053473383;0.0580373338758138;0.901005335985791;0.0183502766650118!10;0.000424429057850403;0.787011369867347;0.0265471738971797;0.186017027177623!11;0.980773576159872;0.00288441092022943;0.0112881371476514;0.00505387577224699!12;0.00910016354025402;0.110309548705244;0.067398640215239;0.813191647539263!13;0.247510191439521;0.310538585563303;0.250093336065814;0.191857886931362!14;0.279511388484175;0.211997744589979;0.250716948230666;0.25777391869518!15;0.264450556636199;0.270002412100532;0.142605610458404;0.322941420804866!16;0.227607268597394;0.212076090129562;0.267214464049444;0.2931021772236 | |||
|entrez_gene_id=8521 | |entrez_gene_id=8521 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:GCM1_f1 /UNIPROBE:Gcm1_primary;SCI09 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:GCM1_f1 /UNIPROBE:Gcm1_primary;SCI09 | ||
|name= | |name=non-redundant121 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
|representative_motif_id=Gcm1_primary | |representative_motif_id=Gcm1_primary | ||
| Line 11: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant121
- db :UNIPROBE
- Id :Gcm1_primary
- name :SCI09
- score :0.5177820760215112
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
