FFCP PHASE1:Hg19::chr6:20686715..20686738,+: Difference between revisions
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|id=chr6:20686715..20686738,+
|short_description=p@chr6:20686715..20686738,+
|description=CAGE_peak_at_chr6:20686715..20686738,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:20686715..20686738,+ | |||
|coexpression_cluster_id=C976 | |||
|description=CAGE_peak_at_chr6:20686715..20686738,+ | |||
|id=chr6:20686715..20686738,+ | |||
|ontology_enrichment_celltype=CL:0000242!1.85e-24!2;CL:0002553!6.06e-13!1;CL:0000312!2.25e-10!5;CL:0000095!3.47e-10!17;CL:0000123!3.47e-10!17;CL:0000240!8.57e-09!6;CL:0000311!8.57e-09!6;CL:0000079!8.57e-09!6;CL:0000237!8.57e-09!6;CL:0000036!8.57e-09!6;CL:0000357!8.57e-09!6;CL:0000114!8.57e-09!6;CL:0002319!3.19e-07!25;CL:0002535!4.98e-07!2;CL:0000362!8.35e-07!8;CL:0000333!8.78e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0000123;4.65e-44;2!CL:0000242;4.65e-44;2!CL:0000312;2.52e-18;5!CL:0000240;1.89e-15;6!CL:0000311;1.89e-15;6!CL:0000079;1.89e-15;6!CL:0000237;1.89e-15;6!CL:0000095;5.19e-11;17!CL:0000362;1.24e-10;9!CL:0002319;6.21e-08;25!CL:0002159;3.66e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,4.65e-44,2;CL:0000312,2.52e-18,5;CL:0000240,1.89e-15,6;CL:0000311,1.89e-15,6;CL:0000079,1.89e-15,6;CL:0000237,1.89e-15,6;CL:0000036,1.89e-15,6;CL:0000357,1.89e-15,6;CL:0000114,1.89e-15,6;CL:0000095,5.19e-11,17;CL:0000123,5.19e-11,17;CL:0000362,1.24e-10,9;CL:0000333,1.60e-08,41;CL:0002319,6.21e-08,25;CL:0002159,3.66e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000357;1.89e-15;6!CL:0000114;1.89e-15;6!UBERON:0003056;1.12e-08;3 | |||
|ontology_enrichment_disease=DOID:0050687!1.58e-08!143;DOID:3119!2.81e-08!14;DOID:305!6.32e-08!106;DOID:154!4.69e-07!2;DOID:4236!4.69e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3119;7.00e-15;14!DOID:5409;6.87e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,7.00e-15,14;DOID:0050687,1.18e-09,143;DOID:305,1.77e-07,106;DOID:162,2.69e-07,235;DOID:14566,3.89e-07,239;DOID:5409,6.87e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002426!5.38e-13!1;UBERON:0003831!5.38e-13!1;UBERON:0003898!5.38e-13!1;UBERON:0004830!5.38e-13!1;UBERON:0001774!5.38e-13!1;UBERON:0003830!5.38e-13!1;UBERON:0005175!5.38e-13!1;UBERON:0003897!5.38e-13!1;UBERON:0001103!5.38e-13!1;UBERON:0010084!5.38e-13!1;UBERON:0001630!3.93e-07!2;UBERON:0005090!3.93e-07!2;UBERON:0006955!4.98e-07!2;UBERON:0004801!4.98e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;9.64e-07;15!UBERON:0007376;9.64e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,9.64e-07,15;UBERON:0007376,9.64e-07,15;UBERON:0007383,9.64e-07,15 | |||
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|short_description=p@chr6:20686715..20686738,+ | |||
}} | }} |
Latest revision as of 22:35, 30 July 2015
Short description: | p@chr6:20686715..20686738, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:20686715..20686738, + |
Coexpression cluster: | C976_anaplastic_small_retinoblastoma_gastrointestinal_merkel_neuroblastoma_carcinoid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 4.65e-44 | 2 |
keratinocyte | 2.52e-18 | 5 |
stratified squamous epithelial cell | 1.89e-15 | 6 |
keratin accumulating cell | 1.89e-15 | 6 |
stratified epithelial cell | 1.89e-15 | 6 |
keratinizing barrier epithelial cell | 1.89e-15 | 6 |
epithelial fate stem cell | 1.89e-15 | 6 |
stratified epithelial stem cell | 1.89e-15 | 6 |
surface ectodermal cell | 1.89e-15 | 6 |
neuron associated cell | 5.19e-11 | 17 |
neuron associated cell (sensu Vertebrata) | 5.19e-11 | 17 |
epidermal cell | 1.24e-10 | 9 |
migratory neural crest cell | 1.60e-08 | 41 |
neural cell | 6.21e-08 | 25 |
general ecto-epithelial cell | 3.66e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 9.64e-07 | 15 |
outer epithelium | 9.64e-07 | 15 |
enveloping layer of ectoderm | 9.64e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 7.00e-15 | 14 |
cell type cancer | 1.18e-09 | 143 |
carcinoma | 1.77e-07 | 106 |
cancer | 2.69e-07 | 235 |
disease of cellular proliferation | 3.89e-07 | 239 |
lung small cell carcinoma | 6.87e-07 | 4 |