FFCP PHASE1:Hg19::chr10:105505720..105505767,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr10:105505720..105505767,+ | |||
|description=CAGE_peak_at_chr10:105505720..105505767,+ | |||
|id=chr10:105505720..105505767,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.10e-20!43;CL:0000066!2.24e-16!254;CL:0000223!1.34e-15!59;CL:0002251!2.18e-10!21;CL:0002159!2.28e-10!13;CL:0002368!5.37e-09!13;CL:0002621!4.78e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002159;2.99e-19;14!CL:0002251;1.20e-17;20!CL:0002621;2.12e-15;3!CL:0002166;2.06e-14;3!CL:0002077;1.14e-11;34!CL:0002076;5.46e-11;42!CL:0000575;1.05e-09;2!CL:0002537;3.05e-09;5!CL:0000349;1.82e-08;19!CL:0002541;1.65e-07;3!CL:0002178;1.81e-07;3!CL:0000307;9.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,2.92e-19,14;CL:0002251,1.22e-17,20;CL:0002076,9.06e-16,42;CL:0002621,2.03e-15,3;CL:0002166,2.02e-14,3;CL:0002077,8.16e-14,34;CL:0000223,1.41e-12,58;CL:0000066,1.42e-12,253;CL:0000076,4.88e-11,63;CL:0000575,1.44e-09,2;CL:0002537,3.02e-09,5;CL:0000349,1.73e-08,19;CL:0002541,1.67e-07,3;CL:0002178,1.84e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000377;9.62e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!1.50e-14!14;DOID:305!1.90e-09!106;DOID:299!3.43e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.35e-25;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.66e-25,14 | |||
|ontology_enrichment_uberon=UBERON:0005631!4.02e-14!14;UBERON:0000158!4.02e-14!14;UBERON:0004119!4.13e-10!169;UBERON:0000925!4.13e-10!169;UBERON:0006595!4.13e-10!169;UBERON:0001004!2.22e-09!72;UBERON:0003729!2.68e-09!5;UBERON:0003124!4.28e-09!7;UBERON:0003343!2.89e-08!4;UBERON:0004785!2.89e-08!4;UBERON:0000344!3.10e-08!12;UBERON:0005795!4.47e-08!22;UBERON:0003100!2.86e-07!41;UBERON:0001987!3.31e-07!4;UBERON:0004340!3.31e-07!4;UBERON:0000166!3.35e-07!21;UBERON:0000995!3.74e-07!21;UBERON:0000478!4.59e-07!24;UBERON:0001949!4.78e-07!3;UBERON:0000065!8.40e-07!53;UBERON:0000305!9.52e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000974;6.14e-19;6!UBERON:0003343;1.65e-18;4!UBERON:0004785;1.65e-18;4!UBERON:0003729;7.19e-17;13!UBERON:0001949;2.12e-15;3!UBERON:0000161;1.39e-14;19!UBERON:0000166;1.39e-14;19!UBERON:0000344;8.64e-14;20!UBERON:0005631;5.73e-12;10!UBERON:0000158;5.73e-12;10!UBERON:0001708;6.22e-11;4!UBERON:0008895;6.22e-11;4!UBERON:0000165;1.75e-09;28!UBERON:0011159;7.76e-09;5!UBERON:0003124;1.65e-07;3!UBERON:0000920;1.65e-07;3!UBERON:0004923;1.83e-07;55!UBERON:0003929;7.81e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,1.73e-18,4;UBERON:0004785,1.73e-18,4;UBERON:0003729,7.20e-17,13;UBERON:0001949,2.03e-15,3;UBERON:0000344,8.73e-14,20;UBERON:0000166,2.05e-12,22;UBERON:0003102,2.67e-12,99;UBERON:0005631,9.42e-12,14;UBERON:0000158,9.42e-12,14;UBERON:0000153,1.94e-11,62;UBERON:0007811,1.94e-11,62;UBERON:0000974,3.08e-11,10;UBERON:0000161,4.42e-11,36;UBERON:0000033,4.44e-11,56;UBERON:0001708,6.12e-11,4;UBERON:0008895,6.12e-11,4;UBERON:0004923,6.67e-11,66;UBERON:0000165,4.15e-09,29;UBERON:0000930,4.15e-09,29;UBERON:0011159,7.66e-09,5;UBERON:0001444,1.56e-07,49;UBERON:0000920,1.67e-07,3;UBERON:0010188,1.94e-07,6;UBERON:0002539,1.94e-07,6;UBERON:0008816,1.94e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,0,0,0.919421224478927,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0.668462741311041,0,1.32920336750173,0,0.25618263945135,0.520237390239513,0,0,0,0,0,0,0.113309342697566,0.383220493601921,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50347753918506,4.90943017063502,6.88331028933609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41450627898976,0,1.60846355858609,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74935335947108,2.35174979478403,1.55952606966625,0.358234090811393,0.581267877027924,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0.606255142892519,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80455823272956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.412164046590889,0,0,1.72279661398852,0.650060246036521,0,0,0,0,0,0,0,0,0,0.661139661443912,0.192190067365106,0.893288987462089,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,1.34060455107157,1.08890984861323,0.282431402330337,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0.222886768554957,0,23.6357039890313,1.48482340416319,20.5797670406485,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0.718946809178615,0,0,0,0,0,0,0,0,0,0,0,0.796554137998498,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0,6.69902435437031,0,7.46248686426089,0,0.156980256395025,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,8.41357861407986,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,1.90915712168644,2.05784034570193,1.39294730528644,0,0,0,0,0,2.81268147816416,0,0.90392296312213,0,0,0,0,0.320635281006135,0,0.19980960958213,3.74635084600676,0,0,0.432164393964449,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,4.36065093879046,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9337051562167,0,0,0,0,0,0,10.8518013820931,0,0,0.306345576763462,0,0.157054096250234,0,0,0,0,0,0,0,0.124980407962107,0,0,2.82318983637806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,1.19992437512958,0,0,0,0,1.258915569475,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86480665151949,2.00548529691159,2.20114318226015,2.4260389891571,0,0,0,0,0,0,0.261906694481422,0,0.887136517302272,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.79832133146375,0,0,0,0,0,3.00324785108587,0,0,0.280272163313789,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0.111855431797792,9.71687312790905,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,3.88184358887261,2.48748236736422,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.407955318967927,0,0.735159196278759,0,0.0757786982182394,0,0,0,2.34557380091079,0,0,0,0,0,0,0.435433495793923,0.684466602170562,2.35732185551056,0.860666464712116,0.332660356546013,0.0814032686109745,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0.320568492303233 | |||
|short_description=p@chr10:105505720..105505767,+ | |||
}} |
Latest revision as of 10:02, 23 July 2015
Short description: | p@chr10:105505720..105505767, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:105505720..105505767, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 2.92e-19 | 14 |
epithelial cell of alimentary canal | 1.22e-17 | 20 |
endo-epithelial cell | 9.06e-16 | 42 |
gingival epithelial cell | 2.03e-15 | 3 |
epithelial cell of Malassez | 2.02e-14 | 3 |
ecto-epithelial cell | 8.16e-14 | 34 |
endodermal cell | 1.41e-12 | 58 |
epithelial cell | 1.42e-12 | 253 |
squamous epithelial cell | 4.88e-11 | 63 |
corneal epithelial cell | 1.44e-09 | 2 |
amnion mesenchymal stem cell | 3.02e-09 | 5 |
extraembryonic cell | 1.73e-08 | 19 |
chorionic membrane mesenchymal stem cell | 1.67e-07 | 3 |
epithelial cell of stomach | 1.84e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 1.73e-18 | 4 |
respiratory system mucosa | 1.73e-18 | 4 |
mouth mucosa | 7.20e-17 | 13 |
gingival epithelium | 2.03e-15 | 3 |
mucosa | 8.73e-14 | 20 |
oral opening | 2.05e-12 | 22 |
surface structure | 2.67e-12 | 99 |
extraembryonic membrane | 9.42e-12 | 14 |
membranous layer | 9.42e-12 | 14 |
anterior region of body | 1.94e-11 | 62 |
craniocervical region | 1.94e-11 | 62 |
neck | 3.08e-11 | 10 |
orifice | 4.42e-11 | 36 |
head | 4.44e-11 | 56 |
jaw skeleton | 6.12e-11 | 4 |
splanchnocranium | 6.12e-11 | 4 |
organ component layer | 6.67e-11 | 66 |
mouth | 4.15e-09 | 29 |
stomodeum | 4.15e-09 | 29 |
primary subdivision of cranial skeletal system | 7.66e-09 | 5 |
subdivision of head | 1.56e-07 | 49 |
egg chorion | 1.67e-07 | 3 |
protuberance | 1.94e-07 | 6 |
pharyngeal arch | 1.94e-07 | 6 |
embryonic head | 1.94e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.66e-25 | 14 |