FFCP PHASE1:Hg19::chr11:119056158..119056172,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79849 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19891 | |||
|TSSclassifier=strong | |||
|UniProt=Q86UT5,B0YJ61 | |||
|association_with_transcript=0bp_to_ENST00000527308,NM_001168468,NM_024791,NR_033122_5end | |||
|cluster_id=chr11:119056158..119056172,+ | |||
|coexpression_cluster_id=C3094 | |||
|description=CAGE_peak_2_at_PDZD3_5end | |||
|id=chr11:119056158..119056172,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002253;2.05e-07;2!CL:0002535;2.05e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.75e-07,2;CL:0002253,2.25e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006242;5.15e-14;1!UBERON:0001045;1.51e-13;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:299;3.76e-08;25!DOID:4929;1.50e-07;2!DOID:3493;2.05e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,3.91e-08,25;DOID:4929,1.45e-07,2;DOID:3493,1.99e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!1.94e-28!35;UBERON:0000160!1.78e-27!27;UBERON:0000059!4.47e-25!11;UBERON:0004907!1.36e-18!5;UBERON:0004921!3.68e-16!129;UBERON:0004185!3.68e-16!129;UBERON:0001155!3.83e-16!9;UBERON:0001007!1.15e-15!155;UBERON:0001555!1.15e-15!155;UBERON:0007026!1.15e-15!155;UBERON:0004119!5.91e-14!169;UBERON:0000925!5.91e-14!169;UBERON:0006595!5.91e-14!169;UBERON:0001052!1.77e-13!4;UBERON:0001046!3.75e-10!19;UBERON:0009497!8.32e-10!25;UBERON:0000015!8.32e-10!25;UBERON:0002423!8.32e-10!25;UBERON:0006235!8.32e-10!25;UBERON:0004161!8.32e-10!25;UBERON:0000077!1.13e-08!130;UBERON:0002110!1.33e-08!3;UBERON:0006242!1.33e-08!3;UBERON:0003929!2.50e-08!54;UBERON:0005172!3.39e-08!55;UBERON:0005173!3.39e-08!55;UBERON:0009854!6.22e-08!23;UBERON:0000481!1.06e-07!347;UBERON:0002417!3.18e-07!61;UBERON:0000916!3.18e-07!61;UBERON:0001154!4.01e-07!1;UBERON:0001153!4.01e-07!1;UBERON:0009856!5.91e-07!26;UBERON:0000996!6.02e-07!1;UBERON:0007029!7.15e-07!1;UBERON:0002107!7.89e-07!19;UBERON:0006925!7.89e-07!19;UBERON:0008836!7.89e-07!19;UBERON:0001301!8.02e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;5.37e-55;17!UBERON:0005409;7.12e-43;22!UBERON:0000059;2.01e-40;11!UBERON:0001155;2.07e-34;9!UBERON:0004921;2.58e-27;33!UBERON:0002108;3.34e-23;4!UBERON:0004907;6.83e-23;5!UBERON:0001154;1.51e-13;1!UBERON:0001153;1.51e-13;1!UBERON:0009854;1.51e-13;1!UBERON:0001052;1.78e-13;4!UBERON:0001555;5.54e-11;54!UBERON:0001007;7.34e-08;81!UBERON:0006955;2.05e-07;2!UBERON:0004801;2.05e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.72e-55,17;UBERON:0000059,1.95e-40,11;UBERON:0005409,8.16e-38,25;UBERON:0001155,2.00e-34,9;UBERON:0002108,3.75e-23,4;UBERON:0004907,6.83e-23,5;UBERON:0001154,1.25e-13,1;UBERON:0001153,1.25e-13,1;UBERON:0001045,1.25e-13,1;UBERON:0001052,1.95e-13,4;UBERON:0004921,1.74e-07,118;UBERON:0006955,1.75e-07,2;UBERON:0004801,1.75e-07,2;UBERON:0001007,2.36e-07,145;UBERON:0001555,2.36e-07,145;UBERON:0007026,2.36e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24568648489864,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,1.76352923497993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,2.98578579323551,4.95362361218699,3.05515072466813,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0.391102765469606,0,3.20179492109029,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.164831716762333,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,1.33969702408637,0.891727998294968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0.129282956361551,0,0.513260513652988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,6.39211104356647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34109717480496,0,0,0,0.485710993059139,0,0,0,0,0,0,7.71741581079447,3.49695296806332,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87440646741078,0,0,0,0.665756774185513,0,0 | |||
|short_description=p2@PDZD3 | |||
}} |
Latest revision as of 03:07, 16 September 2015
Short description: | p2@PDZD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PDZD3_5end |
Coexpression cluster: | C3094_rectum_small_colon_Eosinophils_temporal_appendix_CD4 |
Association with transcript: | 0bp_to_ENST00000527308, NM_001168468, NM_024791, NR_033122_5end |
EntrezGene: | PDZD3 |
HGNC: | 19891 |
UniProt: | Q86UT5B0YJ61 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.75e-07 | 2 |
epithelial cell of large intestine | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 5.72e-55 | 17 |
large intestine | 1.95e-40 | 11 |
gastrointestinal system | 8.16e-38 | 25 |
colon | 2.00e-34 | 9 |
small intestine | 3.75e-23 | 4 |
lower digestive tract | 6.83e-23 | 5 |
vermiform appendix | 1.25e-13 | 1 |
caecum | 1.25e-13 | 1 |
midgut | 1.25e-13 | 1 |
rectum | 1.95e-13 | 4 |
subdivision of digestive tract | 1.74e-07 | 118 |
uterine epithelium | 1.75e-07 | 2 |
cervix epithelium | 1.75e-07 | 2 |
digestive system | 2.36e-07 | 145 |
digestive tract | 2.36e-07 | 145 |
primitive gut | 2.36e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 3.91e-08 | 25 |
tubular adenocarcinoma | 1.45e-07 | 2 |
signet ring cell adenocarcinoma | 1.99e-07 | 2 |