FFCP PHASE1:Hg19::chr17:7348374..7348435,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1140 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1961 | |||
|TSSclassifier=strong | |||
|UniProt=P11230,Q8IZ46 | |||
|association_with_transcript=0bp_to_ENST00000306071,NM_000747,uc002ghb.2_5end | |||
|cluster_id=chr17:7348374..7348435,+ | |||
|coexpression_cluster_id=C737 | |||
|description=CAGE_peak_1_at_CHRNB1_5end | |||
|id=chr17:7348374..7348435,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.59e-18!254;CL:0002321!4.20e-12!248;CL:0000220!9.08e-12!246;CL:0000223!2.97e-08!59;CL:1000507!5.44e-07!12;CL:1000494!5.44e-07!12;CL:0002368!6.22e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.83e-10;10!CL:1000494;1.83e-10;10!CL:0002368;4.59e-09;13!CL:1000449;3.93e-08;15!CL:1000497;5.23e-08;17!CL:0002518;5.23e-08;17!CL:0002159;1.55e-07;14!CL:0002076;6.52e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.81e-24,253;CL:0002321,8.83e-12,250;CL:0000223,1.44e-11,58;CL:1000507,1.96e-10,10;CL:1000494,1.96e-10,10;CL:0002368,5.37e-09,13;CL:0002076,8.59e-09,42;CL:1000449,3.90e-08,15;CL:1000497,5.10e-08,17;CL:0002518,5.10e-08,17;CL:0002159,1.54e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000223;6.75e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000483!7.00e-21!309;UBERON:0000119!4.93e-20!312;UBERON:0000481!2.11e-17!347;UBERON:0000475!3.86e-15!365;UBERON:0000922!3.70e-14!612;UBERON:0000468!1.33e-13!659;UBERON:0002050!3.57e-12!605;UBERON:0005423!3.57e-12!605;UBERON:0000923!4.62e-12!604;UBERON:0005291!4.62e-12!604;UBERON:0006598!4.62e-12!604;UBERON:0002532!4.62e-12!604;UBERON:0003104!1.51e-11!238;UBERON:0009142!1.51e-11!238;UBERON:0000467!1.79e-11!625;UBERON:0000480!2.66e-11!626;UBERON:0005177!1.96e-10!107;UBERON:0000490!2.11e-10!138;UBERON:0000466!2.27e-10!126;UBERON:0002100!3.45e-10!216;UBERON:0001048!9.42e-10!168;UBERON:0004111!5.01e-09!241;UBERON:0004119!7.46e-09!169;UBERON:0000925!7.46e-09!169;UBERON:0006595!7.46e-09!169;UBERON:0000464!3.04e-08!104;UBERON:0000025!8.29e-08!194;UBERON:0003103!1.00e-07!69;UBERON:0005911!1.13e-07!82;UBERON:0003914!1.69e-07!118;UBERON:0005256!1.88e-07!143;UBERON:0006554!2.38e-07!44;UBERON:0000477!4.81e-07!286;UBERON:0009773!5.44e-07!12;UBERON:0001231!5.44e-07!12;UBERON:0004810!5.44e-07!12;UBERON:0000020!5.98e-07!23;UBERON:0001008!6.33e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;8.03e-12;16!UBERON:0002036;8.03e-12;16!UBERON:0004211;1.83e-10;10!UBERON:0009773;1.83e-10;10!UBERON:0001231;1.83e-10;10!UBERON:0004810;1.83e-10;10!UBERON:0006554;1.02e-08;30!UBERON:0001008;1.02e-08;30!UBERON:0006555;3.93e-08;15!UBERON:0004819;3.93e-08;15!UBERON:0001285;3.93e-08;15!UBERON:0007684;3.93e-08;15!UBERON:0002113;1.19e-07;24!UBERON:0011143;1.19e-07;24!UBERON:0010371;9.18e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,4.49e-12,306;UBERON:0005177,6.86e-12,101;UBERON:0000119,1.25e-11,309;UBERON:0004810,1.96e-10,10;UBERON:0006555,9.40e-09,16;UBERON:0004819,9.40e-09,16;UBERON:0002100,1.75e-08,199;UBERON:0001048,2.53e-08,160;UBERON:0004211,3.90e-08,15;UBERON:0009773,3.90e-08,15;UBERON:0001231,3.90e-08,15;UBERON:0001285,3.90e-08,15;UBERON:0007684,3.90e-08,15;UBERON:0004208,3.90e-08,15;UBERON:0005911,4.82e-08,82;UBERON:0005172,7.33e-08,54;UBERON:0005173,7.33e-08,54;UBERON:0000922,7.58e-08,592;UBERON:0002113,9.92e-08,26;UBERON:0003918,9.92e-08,26;UBERON:0011143,9.92e-08,26;UBERON:0005095,9.92e-08,26;UBERON:0007687,9.92e-08,26;UBERON:0009569,1.23e-07,112;UBERON:0003103,1.47e-07,68;UBERON:0004119,2.19e-07,160;UBERON:0000925,2.19e-07,160;UBERON:0006595,2.19e-07,160;UBERON:0006554,3.16e-07,47;UBERON:0001008,6.54e-07,48 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0.522371256399677,15.9727058725981,11.1648186875588,0.436882744260345,0.791300934685361,0,0,0.672325146451775,1.20538905604795,0.730310090387373,0.975865597581014,0.123121058076788,0.612002073732759,1.56727360739044,0.85870796139317,2.32686522623903,3.76627918784408,0,0,0,0,0,0,22.0661093874943,23.1928557459253,8.13458822366933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0.378139268656271,0.886917589850256,1.40535657109002,0.458426764241994,18.9433549912122,9.64039551239516,0,0,0,0.238490624305342,0,0.371457501329565,6.95668425783468,2.58070378531837,3.12426451446835,0.56530794192401,0.419499436209906,1.37559020970034,1.67195973229448,0,0.35576626268671,1.67360306382335,5.63961043952806,0,6.58967555380058,0,4.86085168729056,0.714397826272638,0.898117490504679,0.112611480483322,1.53316637465883,0,0,0,0,13.9550096685611,0.496971951695318,0.506522046658319,0.132409180813219,0,0,0.560677600142307,2.1349799145941,8.6333641946006,0,0.269421344139376,0.163461903113459,0.454072282934794,0,0.234321431833797,0,0.570471821544449,0.149448680551801,0,0,0,0,0.245668634623536,0,0,0,0,0,0,0.625592599359821,0,0,0,0.150238058906597,1.70148274740032,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,40.0049966048024,28.6383426620376,34.9901606374585,1.34171076742555,1.06023814657188,1.39432731443422,1.96956004529204,2.27088765788066,1.09493207722749,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0.738155454624648,23.8411015465858,0,23.5213938216867,8.87285243752816,11.7939266001315,1.18157981336281,0,0,1.20097467208968,21.401305654682,19.1082980537953,47.8517908679363,10.0921405222797,1.95484983186195,0,1.44331342025273,10.549666852732,1.6437217193015,3.89789408954899,3.24089858803628,2.85381228351897,0,0,0,0,0,25.3081351764298,39.8117643831297,27.9296941567501,8.32894261136489,7.26584846284905,39.871798633182,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,1.03417372606222,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.399891964728228,0,0,0,0,1.14861935834114,1.42636905040718,9.55556624006023,7.80810025691457,20.7710717358279,0,0,0,0,0,0,0,0.502548796003046,1.27587750330633,0,0,0,0.12269149171914,2.50085260529839,0.271265023699736,0,0,0.315404830067869,0,0,0,1.03473071292505,0,0,0.0868836144680828,0.979005787313703,79.2661309003077,0,0,0,0.303127571446259,1.66435439510497,0,0,0,0,0,0.511707249066704,0.804269605718038,1.48418066444991,0.154209693802656,0,0,0,0,0,16.8425435054759,8.10312702635888,0,0.728364672026868,0.262248829918848,66.7775427102969,46.9023402965886,26.6678921520131,42.3803751494456,42.2206515571503,0,0.680374821106063,0,1.54227252690289,8.12839312631558,14.0473136679359,51.4850071550977,74.7968408035852,12.3131115097198,0,0,8.46285412884084,7.87235149679294,8.13445986660758,5.15205058238611,0,0,25.8419492098278,21.4519881192052,0,70.8596365081254,3.69716681075147,8.13569476048487,18.8836104303807,0.429680979473094,6.38073453222605,17.6419118751329,116.988094839813,12.8922233981563,25.369088892194,11.9955949744909,13.251669292077,0,0.62962469366128,0.6970372701606,0.308033580176089,0,0,0.37064843820784,0.143124886741991,3.34942532423701,2.84741482246853,0,0.511795582622668,0,0,0,0.899362287916574,0,0.117812402345686,0.404364963146632,1.58510321173008,0.421258456238981,1.46290121726877,0.731140468893853,0,0.545999645631943,0.707027159768564,0,0,0,3.06915619677634,0,0,2.63783490051515,0.30982349809975,0.281695602532241,0,0,2.1400263088875,0,0,0,0.75894634753143,0,14.4333169088268,12.73574323518,18.5114674264248,4.33061483573184,2.58303223602738,10.1082885400575,10.1988935313435,12.1753402109689,0,0,0,0,0,0,0,0,0.747768497892312,0,4.41072388765857,0,0.721346064882224,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0.278406173895242,1.23087398947712,0,0,0,0,5.71381899160387,0.242721043499027,0,1.13654458722565,1.19372242368845,0.593929361665277,0.614321404198464,0,0.140669416410513,0,0,0,0.597743964753209,0.276283915531148,3.77899121781414,1.73856760253663,0,0.622079175323615,35.7676037566361,0,0,0.197286811273867,0,0,0,0.371072392647405,0,0,0,1.44999915086959,0,0,0.709163045303809,0,0.291604613383254,0,0,0,0,0,0,1.09692698576986,0,0,0.0769502585037971,0.113942055847001,7.83917274919404,5.74448924222542,8.0399055222286,0.957003479195758,3.57230614267263,3.19820865611181,1.02193298195737,0,0,0,0,0,0,0,23.209787098083,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.67401132980677,73.8371435514886,0.468528891450678,0,5.28294471116642,0,0,8.46935012340647,0,0.063186579628488,3.15679180770434,4.87334499567062,0.664653872707185,1.323967823502,0.941798755221676,1.19472429772959,11.3843818411917,0.138674673013139,2.08271686002157,0,14.713005912088,8.38688007561745,47.98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| |||
|short_description=p1@CHRNB1 | |||
}} |
Latest revision as of 11:05, 17 September 2015
Short description: | p1@CHRNB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CHRNB1_5end |
Coexpression cluster: | C737_rhabdomyosarcoma_skeletal_mesenchymal_Skeletal_Pericytes_tongue_diaphragm |
Association with transcript: | 0bp_to_ENST00000306071, NM_000747, uc002ghb.2_5end |
EntrezGene: | CHRNB1 |
HGNC: | 1961 |
UniProt: | P11230Q8IZ46 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.81e-24 | 253 |
embryonic cell | 8.83e-12 | 250 |
endodermal cell | 1.44e-11 | 58 |
kidney tubule cell | 1.96e-10 | 10 |
nephron tubule epithelial cell | 1.96e-10 | 10 |
respiratory epithelial cell | 5.37e-09 | 13 |
endo-epithelial cell | 8.59e-09 | 42 |
epithelial cell of nephron | 3.90e-08 | 15 |
kidney cell | 5.10e-08 | 17 |
kidney epithelial cell | 5.10e-08 | 17 |
general ecto-epithelial cell | 1.54e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
epithelium | 4.49e-12 | 306 |
trunk region element | 6.86e-12 | 101 |
cell layer | 1.25e-11 | 309 |
nephron tubule epithelium | 1.96e-10 | 10 |
excretory tube | 9.40e-09 | 16 |
kidney epithelium | 9.40e-09 | 16 |
trunk | 1.75e-08 | 199 |
primordium | 2.53e-08 | 160 |
nephron epithelium | 3.90e-08 | 15 |
renal tubule | 3.90e-08 | 15 |
nephron tubule | 3.90e-08 | 15 |
nephron | 3.90e-08 | 15 |
uriniferous tubule | 3.90e-08 | 15 |
nephrogenic mesenchyme | 3.90e-08 | 15 |
endo-epithelium | 4.82e-08 | 82 |
abdomen element | 7.33e-08 | 54 |
abdominal segment element | 7.33e-08 | 54 |
embryo | 7.58e-08 | 592 |
kidney | 9.92e-08 | 26 |
kidney mesenchyme | 9.92e-08 | 26 |
upper urinary tract | 9.92e-08 | 26 |
kidney rudiment | 9.92e-08 | 26 |
kidney field | 9.92e-08 | 26 |
subdivision of trunk | 1.23e-07 | 112 |
compound organ | 1.47e-07 | 68 |
endoderm-derived structure | 2.19e-07 | 160 |
endoderm | 2.19e-07 | 160 |
presumptive endoderm | 2.19e-07 | 160 |
urinary system structure | 3.16e-07 | 47 |
renal system | 6.54e-07 | 48 |