FFCP PHASE1:Mm9::chr10:79256422..79256466,+: Difference between revisions
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{{FFCP|EntrezGene=18483|HGNC=|MCL_coexpression_id=2583|UniProt=Q9Z0P4,Q3TRX4,Q542N8,Q8CB16,Q3UZP7|association_with_transcript=105bp_to_ENSMUST00000046945,ENSMUST00000105379,NM_001161747,NM_023128,uc007fzv.2,uc007fzw.2,uc007fzx.2_5end|description=CAGE_peak_2_at_Palm_5end|id=chr10:79256422..79256466,+|ontology_enrichment_celltype=CL:0000055!1.71e-13!50;CL:0000221!7.54e-11!44;CL:0000133!7.54e-11!44;CL:0002319!1.01e-10!43;CL:0000393!1.93e-10!39;CL:0000211!1.93e-10!39;CL:0000540!3.40e-07!33;CL:0000047!3.40e-07!33;CL:0000031!3.40e-07!33;CL:0000404!3.40e-07!33|ontology_enrichment_celltype_v019_2=CL:0000221,6.54e-11,44;CL:0000133,6.54e-11,44;CL:0002319,8.77e-11,43;CL:0000393,1.68e-10,39;CL:0000211,1.68e-10,39;CL:0000540,3.12e-07,33;CL:0000047,3.12e-07,33;CL:0000031,3.12e-07,33;CL:0000404,3.12e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.76e-21!73;UBERON:0005743!4.76e-21!73;UBERON:0000073!2.87e-20!75;UBERON:0001016!2.87e-20!75;UBERON:0004121!3.99e-20!102;UBERON:0000924!3.99e-20!102;UBERON:0006601!3.99e-20!102;UBERON:0002346!2.57e-14!71;UBERON:0003075!2.57e-14!71;UBERON:0007284!2.57e-14!71;UBERON:0001049!2.92e-13!52;UBERON:0005068!2.92e-13!52;UBERON:0006241!2.92e-13!52;UBERON:0007135!2.92e-13!52;UBERON:0000955!3.78e-12!50;UBERON:0006238!3.78e-12!50;UBERON:0002616!8.86e-12!49;UBERON:0000033!1.46e-11!63;UBERON:0003080!1.91e-09!40;UBERON:0004111!3.62e-09!122;UBERON:0002780!4.06e-09!39;UBERON:0001890!4.06e-09!39;UBERON:0006240!4.06e-09!39;UBERON:0003056!6.80e-09!49;UBERON:0000025!1.27e-08!114;UBERON:0002020!2.94e-08!34;UBERON:0002791!2.75e-07!29;UBERON:0003528!2.75e-07!29;UBERON:0001893!2.75e-07!29;UBERON:0004535!3.05e-07!23;UBERON:0001009!3.05e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.53e-21,73;UBERON:0001016,2.15e-20,75;UBERON:0010314,6.50e-20,92;UBERON:0004121,1.69e-19,95;UBERON:0000924,1.69e-19,95;UBERON:0006601,1.69e-19,95;UBERON:0010371,2.63e-14,73;UBERON:0002346,5.50e-14,64;UBERON:0003075,5.50e-14,64;UBERON:0007284,5.50e-14,64;UBERON:0001049,2.44e-13,52;UBERON:0005068,2.44e-13,52;UBERON:0006241,2.44e-13,52;UBERON:0007135,2.44e-13,52;UBERON:0000073,6.18e-13,54;UBERON:0000955,3.25e-12,47;UBERON:0006238,3.25e-12,47;UBERON:0002616,7.67e-12,46;UBERON:0003080,1.70e-09,40;UBERON:0002780,3.62e-09,39;UBERON:0001890,3.62e-09,39;UBERON:0006240,3.62e-09,39;UBERON:0003056,6.07e-09,49;UBERON:0004111,8.21e-09,122;UBERON:0000025,2.50e-08,114;UBERON:0002020,2.65e-08,34;UBERON:0003528,2.52e-07,29;UBERON:0002791,2.52e-07,29;UBERON:0001893,2.52e-07,29;UBERON:0004535,2.79e-07,23;UBERON:0001009,2.79e-07,23|phase1_expression=4.80446541314382,0,0,0.30246421130683,0,0,0.233612640595526,0,0,0,0.171217968225505,0,0,0,0.333109761815663,0.202475267389826,0,0.157731082679119,0.548457734422955,0,4.93251082876205,4.0709289992363,4.4403964153619,0.159992422793407,0.22940928106717,0,0,0,0.190023419456374,0.252030129759931,0,1.90509202037889,2.46025915033828,0,0,0,0,2.51118978442145,3.906676722619,4.71171369576418,2.94115744015507,3.41522742479223,2.42755176515577,28.8303713164072,29.0951792600007,28.6332933372223,14.8654355426127,28.9973457985994,24.8245386489953,28.5811951639197,14.8385606922884,17.2503077237966,0.167782606057736,0,0,15.4355661621568,37.2493471920384,17.0171790451556,5.66486090406874,6.87688273053643,6.97214543856797,13.2149367506962,11.5608323494448,4.49949858640699,2.96659908770092,6.3943210345149,16.4780060785123,29.2005912044381,3.52544681848824,4.3201900266141,3.78584930432488,8.56952953211411,8.83474163806454,5.38959516545798,3.1629005436018,8.27296907949019,1.10115880999389,7.53355294702608,9.06278546211836,7.25374582516066,8.32537556781928,9.37644067002168,6.14202597803038,8.4414391504752,7.18151764551008,6.18720029494702,5.55249555116501,5.59198337475902,2.04460721999597,4.1564358058732,10.7249860819621,0.860423876981386,0.679971333707751,0,0,0,2.10666630197628,25.9054090318648,33.7721805983729,36.0406366000547,5.7745802108439,42.3477375467249,91.7298862943925,106.660005473,0.432982082022428,0.253359865475099,1.01104889002957,0.91347103775248,1.03575153458869,6.97678053604676,6.7659277438793,1.82679286987285,5.07354093963329,5.57673770044703,4.70354828542819,7.03732911446183,1.73036477414062,7.95296463059514,3.5384422077995,4.04417124868523,4.85851340612866,3.39412677194655,1.86391761218122,6.14839673724249,10.2628886338593,0.766371165625774,2.87556298814209,2.99951365496704,3.04968544975355,8.38827580667007,5.94750783664214,3.26701315493447,9.73416193076748,10.9957646652042,8.10373373782284,9.40999325792994,6.82323737797119,3.85661608891288,0.758168275301024,4.62972082950243,2.99277018814219,2.29902104433473,4.86167750474443,5.42537344208574,5.71506592871154,3.71529788826064,5.528401749024,6.98499100995342,1.72454394346274,2.45837904218165,3.51902248327898,3.28793598641362,5.00485048606076,11.1440693287093,10.7006710932131,2.9855140022774,4.21327912387941,5.66165395652373,4.83077948972507,7.04227626620706,4.92504725960302,4.32148947506436,5.68187365404505,4.9191057936851,4.01094493507183,6.0458825635106,5.36546802799238,6.18856314545998,6.58239399653922,7.05920095540109,7.1340552400353,9.9415991449226,9.44065495751518,13.0180226197561,4.6263788684108,4.93942139420565,0,1.05780226665418,3.83918850963421,1.39342003116263,3.60828891701861,2.01683524623343,3.33567065767305,2.09248188723815,2.84717436926707,2.47048432086016,4.02136334080431,1.98956472041151,2.72949721966768,1.79763881730844,1.29682829924817,1.39398891278057,6.63837653335786,4.68418901699888,2.25415471346161,6.31319116320474,5.43066964069352,7.925347647606,5.24863258131335,5.01874503130647,3.45397201251025,6.54004968785543,1.48226313543574,1.33476084572875,1.17935397067922,0.674586337154561,0.202860121388503,1.68824011826692,1.01850340712568,0.575392274901621,1.62135226775035,0.823684239564244,0,1.48856379067401,1.24815069245824,0.757736633841335,0.358794827043824,0.482443521363367,3.69506380333209,3.7898282354097,2.28150967018836,5.26209765903083,3.75504397261603,2.51259386162724,3.57065461329021,6.63454402716516,4.72905432318573,4.65075848262427,7.97273843287435,4.7520361267564,4.31712454664739,7.5217510462386,0,1.63171705145613,1.47529281905711,3.86311444826625,10.1146871692309,7.61875962849321,14.4262751931474,5.04941854408746,8.20321370482267,12.4940398174924,11.8482868753039,13.3822526853429,10.6943363559549,9.6246020468203,13.7635638569464,12.2747460322751,9.88219444866309,9.3183181762324,5.81954349353901,6.94455854302295,5.21238269931443,12.2077890999676,2.65490276679926,4.37005145078967,2.72091201268276,2.26326095707078,4.42952839321159,5.53383266299069,6.71913562237375,4.36240475373007,3.56497378384721,3.16036757935816,2.10837217149998,0,18.0432991049508,4.32146625675145,5.30370603509293,3.64372959553707,5.49754724291048,6.95638388648075,7.56925494769756,14.6143175575008,3.52007562095566,1.90648863777438,1.7642271844397,11.7069239588451,5.48979050766079,5.72972786817481,5.252383136138,5.74493149107714,3.49777003955821,10.5692422145991,1.19609616558497,4.33412422722767,1.48155621895769,0.188368457004691,0.546776910884101,0.228778173206523,0.679913719975421,0.69975726161829,0.552799895217695,2.86401185404534,4.11236791655476,3.86306987541013,2.91614420218863,5.01811910434725,5.45906409365444,4.5853877770839,5.78574190077352,4.18809507174447,1.68499465279331,0.621339313086926,0.56369293868419,2.99033092087958,2.31641886639937,1.94451188344048,5.8121920564979,2.19642963138012,3.16864544343536,3.6457227756306,4.40409246587986,1.69108884578204,3.45636007509439,0.316011120628178,4.25722952109345,2.05421914329655,0.51968329191118,1.07416017400489,1.19208812868759,0.600977247599844,0.738447635872886,0.908698049533329,0.381034033274999,0.504130925684203,0.292373642219257,0.192423683280659,0.701261413089414,13.3770926332975,0.443971906748129,0.448569283047378,1.17519231454855,13.1368923941889,15.0145980360946,4.2124873581471,11.7902608493486,3.51100472824754,12.9892923801925,12.4287813856938,14.8952833494243,12.2015759464018,12.3314853558716,10.5755145634558,15.5255175053315,7.65546045481175,11.3285602246051,8.28416498802912,3.94391920819871,4.78829848081237,2.39027048055788,3.64660075602441,2.72497111416377,4.04455718590031,4.88942801163553,4.53277125925567,3.85103051510178,3.79045817645696,4.56262739802432,4.52703219326583,4.12022632867483,5.25006249719928,2.87177344778066,3.81034953026459,6.37363792696705,5.59436739344745,3.70877310722976,6.32955356577908,3.77156177623957,4.08194354166476,5.96090474868302,5.0871245821315,4.6113596403512,3.13074049199203,8.04883080640199,4.20911538300549,4.34573164306758,5.61142271657738,6.05038592433288,3.64466584789585,6.54769669071503,2.78886314134739,6.36591816237767,6.49507502638659,5.6143586026898,3.86767897286937,8.41668661102911,4.41182838239031,5.10109238364927|short_description=p2@Palm}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18483 | |||
|HGNC= | |||
|MCL_coexpression_id=2583 | |||
|TSSclassifier=NA | |||
|UniProt=Q9Z0P4,Q3TRX4,Q542N8,Q8CB16,Q3UZP7 | |||
|association_with_transcript=105bp_to_ENSMUST00000046945,ENSMUST00000105379,NM_001161747,NM_023128,uc007fzv.2,uc007fzw.2,uc007fzx.2_5end | |||
|cluster_id=chr10:79256422..79256466,+ | |||
|description=CAGE_peak_2_at_Palm_5end | |||
|id=chr10:79256422..79256466,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.71e-13!50;CL:0000221!7.54e-11!44;CL:0000133!7.54e-11!44;CL:0002319!1.01e-10!43;CL:0000393!1.93e-10!39;CL:0000211!1.93e-10!39;CL:0000540!3.40e-07!33;CL:0000047!3.40e-07!33;CL:0000031!3.40e-07!33;CL:0000404!3.40e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.54e-11,44;CL:0000133,6.54e-11,44;CL:0002319,8.77e-11,43;CL:0000393,1.68e-10,39;CL:0000211,1.68e-10,39;CL:0000540,3.12e-07,33;CL:0000047,3.12e-07,33;CL:0000031,3.12e-07,33;CL:0000404,3.12e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.76e-21!73;UBERON:0005743!4.76e-21!73;UBERON:0000073!2.87e-20!75;UBERON:0001016!2.87e-20!75;UBERON:0004121!3.99e-20!102;UBERON:0000924!3.99e-20!102;UBERON:0006601!3.99e-20!102;UBERON:0002346!2.57e-14!71;UBERON:0003075!2.57e-14!71;UBERON:0007284!2.57e-14!71;UBERON:0001049!2.92e-13!52;UBERON:0005068!2.92e-13!52;UBERON:0006241!2.92e-13!52;UBERON:0007135!2.92e-13!52;UBERON:0000955!3.78e-12!50;UBERON:0006238!3.78e-12!50;UBERON:0002616!8.86e-12!49;UBERON:0000033!1.46e-11!63;UBERON:0003080!1.91e-09!40;UBERON:0004111!3.62e-09!122;UBERON:0002780!4.06e-09!39;UBERON:0001890!4.06e-09!39;UBERON:0006240!4.06e-09!39;UBERON:0003056!6.80e-09!49;UBERON:0000025!1.27e-08!114;UBERON:0002020!2.94e-08!34;UBERON:0002791!2.75e-07!29;UBERON:0003528!2.75e-07!29;UBERON:0001893!2.75e-07!29;UBERON:0004535!3.05e-07!23;UBERON:0001009!3.05e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.53e-21,73;UBERON:0001016,2.15e-20,75;UBERON:0010314,6.50e-20,92;UBERON:0004121,1.69e-19,95;UBERON:0000924,1.69e-19,95;UBERON:0006601,1.69e-19,95;UBERON:0010371,2.63e-14,73;UBERON:0002346,5.50e-14,64;UBERON:0003075,5.50e-14,64;UBERON:0007284,5.50e-14,64;UBERON:0001049,2.44e-13,52;UBERON:0005068,2.44e-13,52;UBERON:0006241,2.44e-13,52;UBERON:0007135,2.44e-13,52;UBERON:0000073,6.18e-13,54;UBERON:0000955,3.25e-12,47;UBERON:0006238,3.25e-12,47;UBERON:0002616,7.67e-12,46;UBERON:0003080,1.70e-09,40;UBERON:0002780,3.62e-09,39;UBERON:0001890,3.62e-09,39;UBERON:0006240,3.62e-09,39;UBERON:0003056,6.07e-09,49;UBERON:0004111,8.21e-09,122;UBERON:0000025,2.50e-08,114;UBERON:0002020,2.65e-08,34;UBERON:0003528,2.52e-07,29;UBERON:0002791,2.52e-07,29;UBERON:0001893,2.52e-07,29;UBERON:0004535,2.79e-07,23;UBERON:0001009,2.79e-07,23 | |||
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| |||
|short_description=p2@Palm | |||
}} |
Latest revision as of 09:01, 26 September 2015
Short description: | p2@Palm |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Palm_5end |
Coexpression cluster: | MCL_coexpression_mm9:2583 |
Association with transcript: | 105bp_to_ENSMUST00000046945, ENSMUST00000105379, NM_001161747, NM_023128, uc007fzv.2, uc007fzw.2, uc007fzx.2_5end |
EntrezGene: | Palm |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.54e-11 | 44 |
neurectodermal cell | 6.54e-11 | 44 |
neural cell | 8.77e-11 | 43 |
electrically responsive cell | 1.68e-10 | 39 |
electrically active cell | 1.68e-10 | 39 |
neuron | 3.12e-07 | 33 |
neuronal stem cell | 3.12e-07 | 33 |
neuroblast | 3.12e-07 | 33 |
electrically signaling cell | 3.12e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.53e-21 | 73 |
nervous system | 2.15e-20 | 75 |
structure with developmental contribution from neural crest | 6.50e-20 | 92 |
ectoderm-derived structure | 1.69e-19 | 95 |
ectoderm | 1.69e-19 | 95 |
presumptive ectoderm | 1.69e-19 | 95 |
ecto-epithelium | 2.63e-14 | 73 |
neurectoderm | 5.50e-14 | 64 |
neural plate | 5.50e-14 | 64 |
presumptive neural plate | 5.50e-14 | 64 |
neural tube | 2.44e-13 | 52 |
neural rod | 2.44e-13 | 52 |
future spinal cord | 2.44e-13 | 52 |
neural keel | 2.44e-13 | 52 |
regional part of nervous system | 6.18e-13 | 54 |
brain | 3.25e-12 | 47 |
future brain | 3.25e-12 | 47 |
regional part of brain | 7.67e-12 | 46 |
anterior neural tube | 1.70e-09 | 40 |
regional part of forebrain | 3.62e-09 | 39 |
forebrain | 3.62e-09 | 39 |
future forebrain | 3.62e-09 | 39 |
pre-chordal neural plate | 6.07e-09 | 49 |
anatomical conduit | 8.21e-09 | 122 |
tube | 2.50e-08 | 114 |
gray matter | 2.65e-08 | 34 |
brain grey matter | 2.52e-07 | 29 |
regional part of telencephalon | 2.52e-07 | 29 |
telencephalon | 2.52e-07 | 29 |
cardiovascular system | 2.79e-07 | 23 |
circulatory system | 2.79e-07 | 23 |