FFCP PHASE1:Hg19::chr4:71226468..71226484,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26952 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19216 | |||
|TSSclassifier=strong | |||
|UniProt=Q99954 | |||
|association_with_transcript=0bp_to_ENST00000226460_5end | |||
|cluster_id=chr4:71226468..71226484,+ | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_1_at_SMR3A_5end | |||
|id=chr4:71226468..71226484,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006298;2.66e-18;1!UBERON:0008801;3.75e-18;1!UBERON:0006965;1.22e-09;2!UBERON:0007297;1.71e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001829!3.56e-16!2;UBERON:0003127!6.94e-16!2;UBERON:0000341!1.16e-15!2;UBERON:0007023!1.04e-14!115;UBERON:0000078!3.08e-14!18;UBERON:0000166!3.94e-12!21;UBERON:0001044!5.88e-12!6;UBERON:0003293!5.88e-12!6;UBERON:0003294!5.88e-12!6;UBERON:0010047!5.88e-12!6;UBERON:0000167!5.88e-12!6;UBERON:0001723!1.55e-10!3;UBERON:0001033!1.55e-10!3;UBERON:0010056!1.55e-10!3;UBERON:0001004!3.11e-10!72;UBERON:0001736!5.59e-09!1;UBERON:0006298!5.59e-09!1;UBERON:0000165!5.78e-09!28;UBERON:0000930!5.78e-09!28;UBERON:0001831!6.50e-09!1;UBERON:0001567!6.50e-09!1;UBERON:0008801!6.50e-09!1;UBERON:0001301!1.18e-08!1;UBERON:0001041!1.83e-08!98;UBERON:0002372!1.84e-08!1;UBERON:0001961!1.84e-08!1;UBERON:0001744!1.84e-08!1;UBERON:0001735!1.84e-08!1;UBERON:0007029!2.29e-08!1;UBERON:0002171!2.46e-08!1;UBERON:0006518!2.46e-08!1;UBERON:0008949!2.46e-08!1;UBERON:0000101!2.46e-08!1;UBERON:0002167!2.46e-08!1;UBERON:0002363!3.79e-08!1;UBERON:0007647!3.79e-08!1;UBERON:0010115!3.79e-08!1;UBERON:0008814!8.45e-08!15;UBERON:0000065!1.60e-07!53;UBERON:0003408!2.36e-07!10;UBERON:0000161!4.63e-07!35;UBERON:0001042!5.60e-07!10;UBERON:0009145!5.60e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.31e-34;2!UBERON:0003127;8.39e-34;2!UBERON:0001044;6.62e-26;6!UBERON:0003293;6.62e-26;6!UBERON:0003294;6.62e-26;6!UBERON:0010047;6.62e-26;6!UBERON:0003408;6.62e-26;6!UBERON:0000167;6.62e-26;6!UBERON:0001041;1.92e-19;14!UBERON:0001736;2.66e-18;1!UBERON:0001831;3.75e-18;1!UBERON:0001567;3.75e-18;1!UBERON:0001301;1.22e-17;1!UBERON:0003126;2.14e-10;7!UBERON:0001005;2.14e-10;7!UBERON:0000165;6.83e-10;28!UBERON:0004089;9.46e-10;2!UBERON:0000341;1.33e-09;2!UBERON:0000161;1.28e-08;19!UBERON:0000166;1.28e-08;19!UBERON:0004921;2.01e-07;33!UBERON:0001723;9.64e-07;3!UBERON:0006947;9.64e-07;3!UBERON:0001033;9.64e-07;3!UBERON:0004054;9.64e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.31e-34,2;UBERON:0003127,6.00e-34,2;UBERON:0001044,6.62e-26,6;UBERON:0003293,6.62e-26,6;UBERON:0003294,6.62e-26,6;UBERON:0010047,6.62e-26,6;UBERON:0000167,6.62e-26,6;UBERON:0001736,2.66e-18,1;UBERON:0006298,2.66e-18,1;UBERON:0001831,3.75e-18,1;UBERON:0001567,3.75e-18,1;UBERON:0008801,3.75e-18,1;UBERON:0001301,1.44e-17,1;UBERON:0003408,7.83e-16,10;UBERON:0000166,1.76e-12,22;UBERON:0003126,1.94e-10,7;UBERON:0001005,1.94e-10,7;UBERON:0004089,9.46e-10,2;UBERON:0000341,1.33e-09,2;UBERON:0000165,1.53e-09,29;UBERON:0000930,1.53e-09,29;UBERON:0001041,5.78e-09,87;UBERON:0001004,6.59e-08,74;UBERON:0000161,9.80e-08,36;UBERON:0000153,9.42e-07,62;UBERON:0007811,9.42e-07,62;UBERON:0007023,9.49e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.17292757703851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0,0,30.7333807461524,0,0,0,0,0,0,0,0,1.25990255782507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,112.392842205722,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,766.234926058914,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,808.280997358801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.39701945702943,0.952257725854961,0,0,0,0.763765899337979,0.606351566874658,0.653150243690884,1.02669990325584,0.673520530145875,15.2051075432474,1.66330178273007,0,0,0,0,0,0,0.813792356631477,0,0,0 | |||
|short_description=p1@SMR3A | |||
}} |
Latest revision as of 09:48, 18 September 2015
Short description: | p1@SMR3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMR3A_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | 0bp_to_ENST00000226460_5end |
EntrezGene: | SMR3A |
HGNC: | 19216 |
UniProt: | Q99954 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.31e-34 | 2 |
open tracheal system trachea | 6.00e-34 | 2 |
saliva-secreting gland | 6.62e-26 | 6 |
gland of oral region | 6.62e-26 | 6 |
gland of foregut | 6.62e-26 | 6 |
oral gland | 6.62e-26 | 6 |
oral cavity | 6.62e-26 | 6 |
submandibular gland | 2.66e-18 | 1 |
submandibular gland primordium | 2.66e-18 | 1 |
parotid gland | 3.75e-18 | 1 |
cheek | 3.75e-18 | 1 |
parotid gland primordium | 3.75e-18 | 1 |
epididymis | 1.44e-17 | 1 |
gland of gut | 7.83e-16 | 10 |
oral opening | 1.76e-12 | 22 |
trachea | 1.94e-10 | 7 |
respiratory airway | 1.94e-10 | 7 |
midface | 9.46e-10 | 2 |
throat | 1.33e-09 | 2 |
mouth | 1.53e-09 | 29 |
stomodeum | 1.53e-09 | 29 |
foregut | 5.78e-09 | 87 |
respiratory system | 6.59e-08 | 74 |
orifice | 9.80e-08 | 36 |
anterior region of body | 9.42e-07 | 62 |
craniocervical region | 9.42e-07 | 62 |
adult organism | 9.49e-07 | 114 |