FFCP PHASE1:Hg19::chr6:75795263..75795278,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1303 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2188 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-43bp_to_BC034715_5end | |||
|cluster_id=chr6:75795263..75795278,- | |||
|coexpression_cluster_id=C259 | |||
|description=CAGE_peak_4_at_COL12A1_5end | |||
|id=chr6:75795263..75795278,- | |||
|ontology_enrichment_celltype=CL:0000057!1.91e-17!75;CL:0000055!2.84e-17!180;CL:0002620!3.42e-10!23;CL:0000136!6.75e-08!15;CL:0002334!9.25e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.51e-11;23!CL:0000134;9.42e-11;55!CL:0000723;7.02e-10;61!CL:0000048;1.01e-09;58!CL:0002320;3.62e-09;188!CL:0002334;3.88e-09;12!CL:0000136;5.03e-08;13!CL:0000034;1.24e-07;69!CL:0000057;5.96e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.14e-18,76;CL:0002620,3.34e-11,23;CL:0000723,3.61e-10,433;CL:0000048,3.98e-10,427;CL:0000136,1.18e-09,15;CL:0000034,2.70e-09,441;CL:0002334,3.65e-09,12;CL:0002320,2.13e-08,361;CL:0000134,3.40e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.19e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.02e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.13e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!4.40e-10!95;UBERON:0002199!5.38e-08!45;UBERON:0002416!5.38e-08!45;UBERON:0000914!8.92e-08!83;UBERON:0002329!8.92e-08!83;UBERON:0003077!8.92e-08!83;UBERON:0003059!8.92e-08!83;UBERON:0007282!8.92e-08!83;UBERON:0009618!8.92e-08!83;UBERON:0007285!8.92e-08!83;UBERON:0005256!2.27e-07!143;UBERON:0000475!2.40e-07!365;UBERON:0001013!4.73e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.54e-08;198!UBERON:0004457;1.62e-08;9!UBERON:0000042;1.62e-08;9!UBERON:0003688;6.28e-08;6!UBERON:0002358;6.28e-08;6!UBERON:0003684;6.28e-08;6!UBERON:0001178;6.28e-08;6!UBERON:0001013;1.12e-07;14!UBERON:0002199;2.46e-07;46!UBERON:0002416;2.46e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,4.24e-10,46;UBERON:0002416,4.24e-10,46;UBERON:0003102,1.52e-09,99;UBERON:0002097,1.27e-08,41;UBERON:0002384,4.55e-08,371;UBERON:0003688,6.41e-08,6;UBERON:0002358,6.41e-08,6;UBERON:0003684,6.41e-08,6;UBERON:0001178,6.41e-08,6;UBERON:0001013,1.02e-07,14 | |||
|phase1_expression=59.9538651592837,71.9377760273703,53.562673556469,71.0520418307226,53.1883702368472,60.1913581629254,10.1319951267324,0.631719873426831,3.65659879479774,0.245733936501509,0,0.873765488520689,0.791300934685361,4.95065411840187,12.9244976533887,1.34465029290355,1.20538905604795,1.46062018077475,0.487932798790507,0.123121058076788,0.204000691244253,0,0.572471974262113,0.273748850145768,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,1.53435074212236,16.2647618573055,11.5307719446255,67.7881708736655,0,16.058950719987,2.45790524626576,4.43458794925128,3.42555664203192,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0.488124115096339,0,3.24056779152704,0,0,0,0,0,0,0,0,0,44.2305037008833,1.01304409331664,0.662045904066094,1.14734648299525,0.354668382198357,0.560677600142307,1.06748995729705,0.49333509683432,0.311211035399766,0.404132016209064,0.817309515567294,0.302714855289863,2.88087962239999,0,0.312160076830321,0,0.597794722207204,1.05691048779388,0.971237666208789,1.82586048712923,1.42907919878425,4.54486974053541,1.54988671763648,19.0080457165129,16.0723504031062,0,0,2.86171393721913,1.37630371859161,0,3.5118209670467,11.3400484445637,6.00952235626387,2.04177929688038,15.606898304931,28.4031327128695,13.3517097730524,10.5031883629541,5.5648365788757,39.4190026269813,19.9145036274801,11.4767905924061,4.67697624773753,10.3497847440087,27.983169187259,4.20279747728911,29.1107865863624,4.33234022378853,2.88253006927829,0.773043412653187,0.545492241181669,0,0,0,0.116193942869518,0,0.504641701751257,0,0,6.43240938192885,0,4.64367928031979,2.16563844500876,2.83936320095625,0.842923450390509,2.41011029883482,2.97793726377464,1.30727666455444,1.18635309555548,2.42696354688296,1.17732879075208,0.38474715694639,0,0,0,0,0,0,0,0,0.245976877086227,0.514703430895577,2.30475599358114,0,1.91005047582099,0.740707561268237,0.325808305310325,0,7.21656710126366,0.463721619900307,0.70445216541493,0,0.462985512576611,0.570762456703795,0,0,0,0,0,1.87467667973554,0.16798212819886,0.141775097242386,1.52249488594842,0.871901815541886,1.15014803749563,0,0,0,0,0,0.126995788584338,0,0,1.71072446022705,0.616964956219941,0.901029173531752,0,0,0,0.22001485746285,13.0564432915356,3.57656445851882,1.690605505112,7.44626726437637,3.12022310734098,0.514414748524284,0,0.266422179016099,4.00338382242813,2.17048642156577,4.11620168390384,3.25736184293735,4.6200953336531,3.16780749173372,0.602878754119172,0,0.599837947092342,0,0,0,0.958499421966331,1.14861935834114,0,2.17171960001369,2.4657158706046,0.716243852959582,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,10.551468287846,5.00170521059677,2.44138521329762,10.3985430765404,12.3116002270042,16.0856463334613,13.1198384791839,3.91229929646035,0,2.0694614258501,0,1.10621501125022,4.77859879574456,0,0.343143423810856,0,0,0,0.606255142892519,0,3.0239029332968,63.7637066094257,80.2606120296567,98.7923532404419,38.3136056274546,26.0970697024019,84.2874546792503,16.325987308949,2.7757744884478,1.59805552781814,0.492762936082855,2.07701771673448,2.44041794765914,0.241718899183244,2.6065841139427,0.184161977871793,5.28146461557191,4.91646153618136,5.24497659837697,0.451199612907412,0.231046011313244,0,0,0.316654886678627,1.13733384070897,0.340187410553031,1.0795795805107,0,0.541892875087706,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0.206082023295445,2.28923662045859,2.80532299729999,0,0,4.82051789532479,0.676695028044854,1.69453478826109,3.68408819342711,2.34322173223702,3.54486808065303,5.075584286998,2.30111894023472,4.80772992492382,0.330569830721956,0.576570202095319,0,0.30347334256665,0,2.20368642781448,0,0,0,0,0.37064843820784,0.286249773483982,1.86079184679834,1.58189712359363,2.66882271493355,0.255897791311334,2.99557291623744,0,0,10.9722199125822,9.60879604076192,6.9509317383955,0,0,0.421258456238981,0.48763373908959,4.87426979262569,0,3.8219975194236,14.1405431953713,0,0,0,0,0,5.9030527684197,0.202910376962704,1.239293992399,0.563391205064483,1.72093622644862,5.50194629673478,1.07001315444375,0.354761064070598,32.2994682005426,18.7698088987144,0,1.39973888097993,0.48111056362756,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.95497793895076,6.83018765915069,3.68592842519078,0,0,3.33926115068718,0.16480387422676,0.422250816255987,1.59398390600856,1.65770349318689,0,0.920418142519393,0,1.24415835064723,0.269605053441981,1.25314822272926,0,0.591860433821602,0,1.11136990144637,0,0.0927680981618513,0,0.260427761085233,0.0874599999961957,1.44999915086959,0.227586896570999,0,0.236387681767936,0,0,0.173624994933292,0,0,0,0,0,0.219385397153973,0,0.975966209950223,1.46205491157214,17.8889027679792,0,0.179515288819544,0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| |||
|short_description=p4@COL12A1 | |||
}} |
Latest revision as of 19:18, 19 September 2015
Short description: | p4@COL12A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COL12A1_5end |
Coexpression cluster: | C259_Preadipocyte_Adipocyte_Fibroblast_Chondrocyte_tenocyte_normal_Ewing |
Association with transcript: | -43bp_to_BC034715_5end |
EntrezGene: | COL12A1 |
HGNC: | 2188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.14e-18 | 76 |
skin fibroblast | 3.34e-11 | 23 |
somatic stem cell | 3.61e-10 | 433 |
multi fate stem cell | 3.98e-10 | 427 |
fat cell | 1.18e-09 | 15 |
stem cell | 2.70e-09 | 441 |
preadipocyte | 3.65e-09 | 12 |
connective tissue cell | 2.13e-08 | 361 |
mesenchymal cell | 3.40e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
integument | 4.24e-10 | 46 |
integumental system | 4.24e-10 | 46 |
surface structure | 1.52e-09 | 99 |
skin of body | 1.27e-08 | 41 |
connective tissue | 4.55e-08 | 371 |
omentum | 6.41e-08 | 6 |
peritoneum | 6.41e-08 | 6 |
abdominal cavity | 6.41e-08 | 6 |
visceral peritoneum | 6.41e-08 | 6 |
adipose tissue | 1.02e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.13e-08 | 14 |