FFCP PHASE1:Mm9::chr2:74550015..74550057,+: Difference between revisions
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{{FFCP|EntrezGene=15434|HGNC=|MCL_coexpression_id=249|UniProt=P09027,Q3UZR4|association_with_transcript=0bp_to_NM_010468,uc008kee.1_5end|description=CAGE_peak_2_at_Hoxd3_5end|id=chr2:74550015..74550057,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000489!8.72e-15!21;UBERON:0003133!8.30e-12!24;UBERON:0005156!1.63e-11!26;UBERON:0000990!1.63e-11!26;UBERON:0002113!6.60e-10!14;UBERON:0003918!6.60e-10!14;UBERON:0005095!6.60e-10!14;UBERON:0007687!6.60e-10!14;UBERON:0000991!1.76e-09!18;UBERON:0005564!1.76e-09!18;UBERON:0006554!5.40e-09!16;UBERON:0001008!6.11e-09!17;UBERON:0004176!9.00e-09!17;UBERON:0009196!9.00e-09!17;UBERON:0009117!9.00e-09!17;UBERON:0003135!1.22e-07!15;UBERON:0000473!6.42e-07!14;UBERON:0003101!9.05e-07!16;UBERON:0000079!9.05e-07!16|ontology_enrichment_uberon_v019_2=UBERON:0000489,3.52e-19,21;UBERON:0003133,8.30e-13,24;UBERON:0005156,8.45e-13,26;UBERON:0000990,8.45e-13,26;UBERON:0002113,1.12e-12,14;UBERON:0003918,1.12e-12,14;UBERON:0011143,1.12e-12,14;UBERON:0005095,1.12e-12,14;UBERON:0007687,1.12e-12,14;UBERON:0006554,1.85e-11,18;UBERON:0000991,2.25e-11,18;UBERON:0005564,2.25e-11,18;UBERON:0001008,1.49e-10,19;UBERON:0004176,1.92e-10,17;UBERON:0009196,1.92e-10,17;UBERON:0009117,1.92e-10,17;UBERON:0003135,5.86e-09,15;UBERON:0003101,3.96e-08,16;UBERON:0000079,3.96e-08,16;UBERON:0000473,5.08e-08,14;UBERON:0002240,1.13e-07,6;UBERON:0005174,1.13e-07,6;UBERON:0001137,1.13e-07,6;UBERON:0001948,9.15e-07,5;UBERON:0002315,9.15e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,1.10556277196391,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.304130793658544,0.367093504323363,0,0,0,0,0,0,0,0,0,0,0.573066879877513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.9937964715728,39.7563373712904,0,0,0,0,0,0,0,0,0,0,0,0,48.9083451886288,38.5827254965569,52.0054453852589,0,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.79928715803342,1.29468941823586,1.92974780784272,2.77576522825817,2.13125834818499,2.53677046981664,1.50722640552623,2.3517741427141,1.25666591329675,0,0.578397427679647,0,0.808834249737046,0.220841518460394,0,1.86391761218122,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,8.04530974417499,8.45967400148633,28.8103944614389,0,0,0,0.180062129805349,0.753524089178575,0,0,0.0937017245597288,0,4.95806383745537,3.9712276835242,3.69497360744293,1.31517439456545,2.78047249225598,1.39300866608867,1.4404749548556,15.5246728118425,0,0,0,0,0.234526059981096,0.36012412292203,0,0,0.154267112887378,0.232533944750408,0.268273401399619,0,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,0,0,0,0.264450566663544,8.74481827194459,9.0572302025571,2.31961430379768,1.81515172161008,0.889512175379481,0.760902504450237,0,0.164698954724011,0.754005626400808,0.994782360205754,0.58489226135736,0,0.432276099749388,0.398282546508734,14.6044283733873,16.1090402779718,10.1436962105772,15.8848035719345,15.3222464862424,11.5724102819026,8.72664212314751,3.24742325555125,2.82597710114475,2.71473760627961,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0,0.169745085775188,0,0.167506257441816,0,0,0.157635144106191,0.221464689648775,0,0,0,0,0,0,1.96705709207614,2.48343071674259,0.963303539926752,0.35163505977661,0.819674726883377,0.757412781613119,1.57754109708128,1.95219372148319,0.430846795465598,0,0,0.283076530788832,2.02405350837447,2.04579100537918,4.34816555741176,0,6.24536374916382,7.47875535402472,12.7051828295789,8.24850614862677,0,0.242780636154981,0.302323556964751,0,1.77181135728464,0.922305443831782,1.03371317267288,0.363533729477506,0.712994756769443,0.316036757935816,0,0,0,0.540183282093931,0,0,0.177340233642274,0,0.164549020602121,0,3.98941903708308,0.42366414172764,0,1.97863503529776,2.09903754704677,2.47282992205439,0.954978752025092,0.656563598980245,0,11.3109434226411,0,0.82554747185289,0.740778109478847,0,0,0,0,0,0,0,1.26534397432454,1.21991680276109,0.324016022465404,0.418176592028937,0.436725127492355,0.134864346384821,0.330613822901344,0.523511883968059,1.03691978633434,0,0,16.4468200648377,12.4093867842823,9.52810822885833,8.13706887909706,8.78571852552046,7.27614879603675,4.9477666240701,2.41176492179135,1.44950472495604,0.864090018773596,0,0.202725215290164,0,0,0.716106782669926,0,0.120195449519969,0.295379054349154,0.100966449948148,0.15241361331,0,0,0,0,0,0,0,0,1.9318959403219,5.44279178808428,8.05867146775966,0.643105137237198,2.00628841614145,0,0,0.572895513439397,0,0,0,0,0,0,0,4.77421798887213,4.78829848081237,5.46347538413229,2.43106717068294,1.25767897576789,1.83843508450014,2.44471400581777,2.26638562962784,2.88827288632634,3.79045817645696,2.5347929989024,2.64076877940507,3.09016974650612,3.00918216302886,2.52716063404698,5.23923060411381,2.0859178670074,1.54327376370964,2.06042950401653,2.79677948255355,2.74295401908332,4.08194354166476,2.86123427936785,3.63366041580821,2.72917203204459,2.876896668317,2.0122077016005,1.8414879800649,3.80251518768413,1.68342681497322,2.60997039873183,3.44765688314472,4.50154147486658,3.25367366490529,2.50778594275484,1.74867404556562,1.63752125911786,1.28922632428979,2.48674831689496,1.76473135295612,0.927471342481686|short_description=p2@Hoxd3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=15434 | |||
|HGNC= | |||
|MCL_coexpression_id=249 | |||
|TSSclassifier=NA | |||
|UniProt=P09027,Q3UZR4 | |||
|association_with_transcript=0bp_to_NM_010468,uc008kee.1_5end | |||
|cluster_id=chr2:74550015..74550057,+ | |||
|description=CAGE_peak_2_at_Hoxd3_5end | |||
|id=chr2:74550015..74550057,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!8.72e-15!21;UBERON:0003133!8.30e-12!24;UBERON:0005156!1.63e-11!26;UBERON:0000990!1.63e-11!26;UBERON:0002113!6.60e-10!14;UBERON:0003918!6.60e-10!14;UBERON:0005095!6.60e-10!14;UBERON:0007687!6.60e-10!14;UBERON:0000991!1.76e-09!18;UBERON:0005564!1.76e-09!18;UBERON:0006554!5.40e-09!16;UBERON:0001008!6.11e-09!17;UBERON:0004176!9.00e-09!17;UBERON:0009196!9.00e-09!17;UBERON:0009117!9.00e-09!17;UBERON:0003135!1.22e-07!15;UBERON:0000473!6.42e-07!14;UBERON:0003101!9.05e-07!16;UBERON:0000079!9.05e-07!16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,3.52e-19,21;UBERON:0003133,8.30e-13,24;UBERON:0005156,8.45e-13,26;UBERON:0000990,8.45e-13,26;UBERON:0002113,1.12e-12,14;UBERON:0003918,1.12e-12,14;UBERON:0011143,1.12e-12,14;UBERON:0005095,1.12e-12,14;UBERON:0007687,1.12e-12,14;UBERON:0006554,1.85e-11,18;UBERON:0000991,2.25e-11,18;UBERON:0005564,2.25e-11,18;UBERON:0001008,1.49e-10,19;UBERON:0004176,1.92e-10,17;UBERON:0009196,1.92e-10,17;UBERON:0009117,1.92e-10,17;UBERON:0003135,5.86e-09,15;UBERON:0003101,3.96e-08,16;UBERON:0000079,3.96e-08,16;UBERON:0000473,5.08e-08,14;UBERON:0002240,1.13e-07,6;UBERON:0005174,1.13e-07,6;UBERON:0001137,1.13e-07,6;UBERON:0001948,9.15e-07,5;UBERON:0002315,9.15e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,1.10556277196391,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.304130793658544,0.367093504323363,0,0,0,0,0,0,0,0,0,0,0.573066879877513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.9937964715728,39.7563373712904,0,0,0,0,0,0,0,0,0,0,0,0,48.9083451886288,38.5827254965569,52.0054453852589,0,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.79928715803342,1.29468941823586,1.92974780784272,2.77576522825817,2.13125834818499,2.53677046981664,1.50722640552623,2.3517741427141,1.25666591329675,0,0.578397427679647,0,0.808834249737046,0.220841518460394,0,1.86391761218122,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,8.04530974417499,8.45967400148633,28.8103944614389,0,0,0,0.180062129805349,0.753524089178575,0,0,0.0937017245597288,0,4.95806383745537,3.9712276835242,3.69497360744293,1.31517439456545,2.78047249225598,1.39300866608867,1.4404749548556,15.5246728118425,0,0,0,0,0.234526059981096,0.36012412292203,0,0,0.154267112887378,0.232533944750408,0.268273401399619,0,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,0,0,0,0.264450566663544,8.74481827194459,9.0572302025571,2.31961430379768,1.81515172161008,0.889512175379481,0.760902504450237,0,0.164698954724011,0.754005626400808,0.994782360205754,0.58489226135736,0,0.432276099749388,0.398282546508734,14.6044283733873,16.1090402779718,10.1436962105772,15.8848035719345,15.3222464862424,11.5724102819026,8.72664212314751,3.24742325555125,2.82597710114475,2.71473760627961,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0,0.169745085775188,0,0.167506257441816,0,0,0.157635144106191,0.221464689648775,0,0,0,0,0,0,1.96705709207614,2.48343071674259,0.963303539926752,0.35163505977661,0.819674726883377,0.757412781613119,1.57754109708128,1.95219372148319,0.430846795465598,0,0,0.283076530788832,2.02405350837447,2.04579100537918,4.34816555741176,0,6.24536374916382,7.47875535402472,12.7051828295789,8.24850614862677,0,0.242780636154981,0.302323556964751,0,1.77181135728464,0.922305443831782,1.03371317267288,0.363533729477506,0.712994756769443,0.316036757935816,0,0,0,0.540183282093931,0,0,0.177340233642274,0,0.164549020602121,0,3.98941903708308,0.42366414172764,0,1.97863503529776,2.09903754704677,2.47282992205439,0.954978752025092,0.656563598980245,0,11.3109434226411,0,0.82554747185289,0.740778109478847,0,0,0,0,0,0,0,1.26534397432454,1.21991680276109,0.324016022465404,0.418176592028937,0.436725127492355,0.134864346384821,0.330613822901344,0.523511883968059,1.03691978633434,0,0,16.4468200648377,12.4093867842823,9.52810822885833,8.13706887909706,8.78571852552046,7.27614879603675,4.9477666240701,2.41176492179135,1.44950472495604,0.864090018773596,0,0.202725215290164,0,0,0.716106782669926,0,0.120195449519969,0.295379054349154,0.100966449948148,0.15241361331,0,0,0,0,0,0,0,0,1.9318959403219,5.44279178808428,8.05867146775966,0.643105137237198,2.00628841614145,0,0,0.572895513439397,0,0,0,0,0,0,0,4.77421798887213,4.78829848081237,5.46347538413229,2.43106717068294,1.25767897576789,1.83843508450014,2.44471400581777,2.26638562962784,2.88827288632634,3.79045817645696,2.5347929989024,2.64076877940507,3.09016974650612,3.00918216302886,2.52716063404698,5.23923060411381,2.0859178670074,1.54327376370964,2.06042950401653,2.79677948255355,2.74295401908332,4.08194354166476,2.86123427936785,3.63366041580821,2.72917203204459,2.876896668317,2.0122077016005,1.8414879800649,3.80251518768413,1.68342681497322,2.60997039873183,3.44765688314472,4.50154147486658,3.25367366490529,2.50778594275484,1.74867404556562,1.63752125911786,1.28922632428979,2.48674831689496,1.76473135295612,0.927471342481686 | |||
|short_description=p2@Hoxd3 | |||
}} |
Latest revision as of 23:29, 26 September 2015
Short description: | p2@Hoxd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Hoxd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:249 |
Association with transcript: | 0bp_to_NM_010468, uc008kee.1_5end |
EntrezGene: | Hoxd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 3.52e-19 | 21 |
reproductive organ | 8.30e-13 | 24 |
reproductive structure | 8.45e-13 | 26 |
reproductive system | 8.45e-13 | 26 |
kidney | 1.12e-12 | 14 |
kidney mesenchyme | 1.12e-12 | 14 |
upper urinary tract | 1.12e-12 | 14 |
kidney rudiment | 1.12e-12 | 14 |
kidney field | 1.12e-12 | 14 |
urinary system structure | 1.85e-11 | 18 |
gonad | 2.25e-11 | 18 |
gonad primordium | 2.25e-11 | 18 |
renal system | 1.49e-10 | 19 |
external genitalia | 1.92e-10 | 17 |
indifferent external genitalia | 1.92e-10 | 17 |
indifferent gonad | 1.92e-10 | 17 |
male reproductive organ | 5.86e-09 | 15 |
male organism | 3.96e-08 | 16 |
male reproductive system | 3.96e-08 | 16 |
testis | 5.08e-08 | 14 |
spinal cord | 1.13e-07 | 6 |
dorsal region element | 1.13e-07 | 6 |
dorsum | 1.13e-07 | 6 |
regional part of spinal cord | 9.15e-07 | 5 |
gray matter of spinal cord | 9.15e-07 | 5 |