FFCP PHASE1:Mm9::chr5:148118792..148118806,-: Difference between revisions
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{{FFCP|EntrezGene=12591|HGNC=|MCL_coexpression_id=412|UniProt=P43241,Q543L9|association_with_transcript=18bp_to_NM_007673,uc009anz.1_5end|description=CAGE_peak_3_at_Cdx2_5end|id=chr5:148118792..148118806,-|ontology_enrichment_celltype=CL:0002563!9.29e-12!9;CL:0002251!9.29e-12!9;CL:0000239!5.70e-08!6;CL:0000677!5.70e-08!6;CL:0000212!5.70e-08!6;CL:0000584!5.70e-08!6|ontology_enrichment_celltype_v019_2=CL:0002563,1.35e-17,9;CL:0002251,1.35e-17,9;CL:0000239,1.21e-11,6;CL:0000677,1.21e-11,6;CL:0000584,1.21e-11,6;CL:0000075,7.14e-10,7;CL:0002076,8.27e-10,15;CL:0000066,3.02e-09,25;CL:0002250,1.49e-07,3;CL:0000223,6.58e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!5.70e-28!43;UBERON:0005409!2.18e-25!59;UBERON:0000344!3.48e-19!15;UBERON:0001242!9.69e-17!13;UBERON:0000060!9.69e-17!13;UBERON:0001262!9.69e-17!13;UBERON:0004786!9.69e-17!13;UBERON:0003350!9.29e-12!9;UBERON:0004808!9.29e-12!9;UBERON:0001277!9.29e-12!9;UBERON:0004923!1.68e-11!24;UBERON:0000485!3.66e-09!11;UBERON:0004119!5.67e-07!130;UBERON:0000925!5.67e-07!130;UBERON:0006595!5.67e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.44e-59,31;UBERON:0005409,3.63e-42,47;UBERON:0000344,2.61e-29,15;UBERON:0001242,1.89e-25,13;UBERON:0001262,1.89e-25,13;UBERON:0004786,1.89e-25,13;UBERON:0003350,1.35e-17,9;UBERON:0004808,1.35e-17,9;UBERON:0001277,1.35e-17,9;UBERON:0004923,7.70e-17,24;UBERON:0001007,1.68e-14,116;UBERON:0001555,1.68e-14,116;UBERON:0007026,1.68e-14,116;UBERON:0004119,4.11e-14,118;UBERON:0000925,4.11e-14,118;UBERON:0006595,4.11e-14,118;UBERON:0000485,4.71e-14,11;UBERON:0004921,1.43e-12,114;UBERON:0002108,1.40e-09,4;UBERON:0000331,7.10e-08,3;UBERON:0002116,7.10e-08,3;UBERON:0001204,7.10e-08,3;UBERON:0001168,7.10e-08,3|phase1_expression=0,13.2610654902957,11.3749809847384,9.37639055051173,9.01612313903425,12.9267039372155,12.6150825921584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.759348360233,13.535147582963,9.76194338995534,6.03066794622705,10.3426191689227,29.0735831768252,20.1624103807945,17.5167103417691,0,0,0,18.1976520443303,13.9637102101134,15.9252097884648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,1.48439043634778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.2309289583559,0,0,13.7946809812639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.27795687669216,13.4869788998408,3.83918850963421,4.64473343720877,11.7269389803105,18.5548842653475,16.4559752445204,13.8864707062168,9.96511029243474,12.3524216043008,10.304743560811,13.5290400987983,11.307917052909,16.178749355776,11.0230405436094,10.9527700289902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604647113929502,0,0,0,1.55056975900933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847328283455281,0,0,0,0,0,0,11.9507143018239,0,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0.609958401380546,1.72808545314882,0,0.87345025498471,0,0.165306911450672,0,21.256855619854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.887943813496259,0.62799699626633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.838452650511929,0.551530525350042,0.222246727801615,1.23621034343337,0.64183841918363,1.01078884705519,1.01391719956096,0.754505365544305,0.280924522409647,0.448176066834085,0.631790158511746,0,0.811190281613988,0.38581844092741,0.412085900803307,0.883193520806384,0.685738504770831,0.354951612318675,0.476872379894642,1.30811774969096,0.564656282491984,0.930760686808441,1.09756783723664,0.526139422875686,0.679020569229309,0,0.474540072496697,1.0835493061312,0.818462086339379,0.77468420592983,0,0,0.935726433781634,0.859484216193193,0,0,0|short_description=p3@Cdx2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12591 | |||
|HGNC= | |||
|MCL_coexpression_id=412 | |||
|TSSclassifier=NA | |||
|UniProt=P43241,Q543L9 | |||
|association_with_transcript=18bp_to_NM_007673,uc009anz.1_5end | |||
|cluster_id=chr5:148118792..148118806,- | |||
|description=CAGE_peak_3_at_Cdx2_5end | |||
|id=chr5:148118792..148118806,- | |||
|ontology_enrichment_celltype=CL:0002563!9.29e-12!9;CL:0002251!9.29e-12!9;CL:0000239!5.70e-08!6;CL:0000677!5.70e-08!6;CL:0000212!5.70e-08!6;CL:0000584!5.70e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.35e-17,9;CL:0002251,1.35e-17,9;CL:0000239,1.21e-11,6;CL:0000677,1.21e-11,6;CL:0000584,1.21e-11,6;CL:0000075,7.14e-10,7;CL:0002076,8.27e-10,15;CL:0000066,3.02e-09,25;CL:0002250,1.49e-07,3;CL:0000223,6.58e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!5.70e-28!43;UBERON:0005409!2.18e-25!59;UBERON:0000344!3.48e-19!15;UBERON:0001242!9.69e-17!13;UBERON:0000060!9.69e-17!13;UBERON:0001262!9.69e-17!13;UBERON:0004786!9.69e-17!13;UBERON:0003350!9.29e-12!9;UBERON:0004808!9.29e-12!9;UBERON:0001277!9.29e-12!9;UBERON:0004923!1.68e-11!24;UBERON:0000485!3.66e-09!11;UBERON:0004119!5.67e-07!130;UBERON:0000925!5.67e-07!130;UBERON:0006595!5.67e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.44e-59,31;UBERON:0005409,3.63e-42,47;UBERON:0000344,2.61e-29,15;UBERON:0001242,1.89e-25,13;UBERON:0001262,1.89e-25,13;UBERON:0004786,1.89e-25,13;UBERON:0003350,1.35e-17,9;UBERON:0004808,1.35e-17,9;UBERON:0001277,1.35e-17,9;UBERON:0004923,7.70e-17,24;UBERON:0001007,1.68e-14,116;UBERON:0001555,1.68e-14,116;UBERON:0007026,1.68e-14,116;UBERON:0004119,4.11e-14,118;UBERON:0000925,4.11e-14,118;UBERON:0006595,4.11e-14,118;UBERON:0000485,4.71e-14,11;UBERON:0004921,1.43e-12,114;UBERON:0002108,1.40e-09,4;UBERON:0000331,7.10e-08,3;UBERON:0002116,7.10e-08,3;UBERON:0001204,7.10e-08,3;UBERON:0001168,7.10e-08,3 | |||
|phase1_expression=0,13.2610654902957,11.3749809847384,9.37639055051173,9.01612313903425,12.9267039372155,12.6150825921584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.759348360233,13.535147582963,9.76194338995534,6.03066794622705,10.3426191689227,29.0735831768252,20.1624103807945,17.5167103417691,0,0,0,18.1976520443303,13.9637102101134,15.9252097884648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,1.48439043634778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.2309289583559,0,0,13.7946809812639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.27795687669216,13.4869788998408,3.83918850963421,4.64473343720877,11.7269389803105,18.5548842653475,16.4559752445204,13.8864707062168,9.96511029243474,12.3524216043008,10.304743560811,13.5290400987983,11.307917052909,16.178749355776,11.0230405436094,10.9527700289902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604647113929502,0,0,0,1.55056975900933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847328283455281,0,0,0,0,0,0,11.9507143018239,0,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0.609958401380546,1.72808545314882,0,0.87345025498471,0,0.165306911450672,0,21.256855619854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.887943813496259,0.62799699626633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.838452650511929,0.551530525350042,0.222246727801615,1.23621034343337,0.64183841918363,1.01078884705519,1.01391719956096,0.754505365544305,0.280924522409647,0.448176066834085,0.631790158511746,0,0.811190281613988,0.38581844092741,0.412085900803307,0.883193520806384,0.685738504770831,0.354951612318675,0.476872379894642,1.30811774969096,0.564656282491984,0.930760686808441,1.09756783723664,0.526139422875686,0.679020569229309,0,0.474540072496697,1.0835493061312,0.818462086339379,0.77468420592983,0,0,0.935726433781634,0.859484216193193,0,0,0 | |||
|short_description=p3@Cdx2 | |||
}} |
Latest revision as of 18:04, 25 September 2015
Short description: | p3@Cdx2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cdx2_5end |
Coexpression cluster: | MCL_coexpression_mm9:412 |
Association with transcript: | 18bp_to_NM_007673, uc009anz.1_5end |
EntrezGene: | Cdx2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.35e-17 | 9 |
epithelial cell of alimentary canal | 1.35e-17 | 9 |
brush border epithelial cell | 1.21e-11 | 6 |
gut absorptive cell | 1.21e-11 | 6 |
enterocyte | 1.21e-11 | 6 |
columnar/cuboidal epithelial cell | 7.14e-10 | 7 |
endo-epithelial cell | 8.27e-10 | 15 |
epithelial cell | 3.02e-09 | 25 |
intestinal crypt stem cell | 1.49e-07 | 3 |
endodermal cell | 6.58e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.44e-59 | 31 |
gastrointestinal system | 3.63e-42 | 47 |
mucosa | 2.61e-29 | 15 |
intestinal mucosa | 1.89e-25 | 13 |
wall of intestine | 1.89e-25 | 13 |
gastrointestinal system mucosa | 1.89e-25 | 13 |
epithelium of mucosa | 1.35e-17 | 9 |
gastrointestinal system epithelium | 1.35e-17 | 9 |
intestinal epithelium | 1.35e-17 | 9 |
organ component layer | 7.70e-17 | 24 |
digestive system | 1.68e-14 | 116 |
digestive tract | 1.68e-14 | 116 |
primitive gut | 1.68e-14 | 116 |
endoderm-derived structure | 4.11e-14 | 118 |
endoderm | 4.11e-14 | 118 |
presumptive endoderm | 4.11e-14 | 118 |
simple columnar epithelium | 4.71e-14 | 11 |
subdivision of digestive tract | 1.43e-12 | 114 |
small intestine | 1.40e-09 | 4 |
ileal mucosa | 7.10e-08 | 3 |
ileum | 7.10e-08 | 3 |
mucosa of small intestine | 7.10e-08 | 3 |
wall of small intestine | 7.10e-08 | 3 |