FFCP PHASE1:Mm9::chr7:31758648..31758666,-: Difference between revisions
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{{FFCP|EntrezGene=54135|HGNC=|MCL_coexpression_id=58|UniProt=Q99KG5|association_with_transcript=-160bp_to_NM_001164184,NM_001164185,NM_017405,uc009ghj.2,uc009ghk.2,uc009ghl.2_5end|description=CAGE_peak_7_at_Lsr_5end|id=chr7:31758648..31758666,-|ontology_enrichment_celltype=CL:0002563!1.61e-10!9;CL:0002251!1.61e-10!9;CL:0000066!1.47e-08!25;CL:0000075!2.94e-08!7;CL:0000239!1.21e-07!6;CL:0000677!1.21e-07!6;CL:0000212!1.21e-07!6;CL:0000584!1.21e-07!6|ontology_enrichment_celltype_v019_2=CL:0002563,2.47e-22,9;CL:0002251,2.47e-22,9;CL:0000239,2.47e-19,6;CL:0000677,2.47e-19,6;CL:0000584,2.47e-19,6;CL:0000075,1.71e-16,7;CL:0000066,3.20e-14,25;CL:0002076,6.46e-13,15;CL:0000682,3.32e-11,3;CL:0000223,2.22e-09,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!3.91e-19!59;UBERON:0000160!9.08e-19!43;UBERON:0000344!8.03e-17!15;UBERON:0001242!1.51e-14!13;UBERON:0000060!1.51e-14!13;UBERON:0001262!1.51e-14!13;UBERON:0004786!1.51e-14!13;UBERON:0003350!1.61e-10!9;UBERON:0004808!1.61e-10!9;UBERON:0001277!1.61e-10!9;UBERON:0000485!8.06e-10!11;UBERON:0001007!6.26e-09!128;UBERON:0001555!6.26e-09!128;UBERON:0007026!6.26e-09!128;UBERON:0004119!1.48e-08!130;UBERON:0000925!1.48e-08!130;UBERON:0006595!1.48e-08!130;UBERON:0004923!2.02e-08!24;UBERON:0004921!8.03e-08!126;UBERON:0004185!8.03e-08!126|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.05e-35,15;UBERON:0000160,4.00e-30,31;UBERON:0001242,5.83e-29,13;UBERON:0001262,5.83e-29,13;UBERON:0004786,5.83e-29,13;UBERON:0003350,2.47e-22,9;UBERON:0004808,2.47e-22,9;UBERON:0001277,2.47e-22,9;UBERON:0004923,3.72e-21,24;UBERON:0005409,1.23e-18,47;UBERON:0000485,4.68e-18,11;UBERON:0002108,1.36e-13,4;UBERON:0000331,8.26e-11,3;UBERON:0002116,8.26e-11,3;UBERON:0001204,8.26e-11,3;UBERON:0001168,8.26e-11,3;UBERON:0001962,3.97e-08,2;UBERON:0001961,3.97e-08,2;UBERON:0001744,3.97e-08,2;UBERON:0001007,2.88e-07,116;UBERON:0001555,2.88e-07,116;UBERON:0007026,2.88e-07,116;UBERON:0004119,4.47e-07,118;UBERON:0000925,4.47e-07,118;UBERON:0006595,4.47e-07,118|phase1_expression=0,8.02643437570531,4.09499315450582,1.51232105653415,1.00179145989269,5.03637815735669,3.73780224952841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,5.43974237497583,5.73523202667925,4.59385571292016,4.73838195774982,5.817723282519,3.04037471130198,3.52842181663903,5.54326276638262,0,0,0,4.04392267651784,0.997407872150954,2.45003227514843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186399445825301,0,0.0755715601067855,0,0,0,0.539703191637817,0,0.448026887097336,0,0,0,0,0.422530259330042,0,0,0,0,0.506719730950197,0,0.79928715803342,0,0,0,0,0,0,0,0,0,0.289198713839823,0,0,0,0,0,0,0.209446706813455,1.53274233125155,0,0,0,0,0,0,0,0,0,0.162241263067758,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219195732427575,1.11218899690239,2.089512999133,0.61734640922383,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,0,0,0.991256348951394,0.528901133327089,0,0,0.128867461322093,0.403367049246685,0.444756087689741,0.380451252225118,1.42358718463353,0.658795818896044,0.754005626400808,1.1937388322469,0.58489226135736,2.69645822596266,1.72910439899755,2.38969527905241,0,0,0,0,0.193952487167626,0,0,0,0,0,0.296452627087149,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,0,0,0,0.214337035031592,0,0.178368817602071,0,0,0,0,0,2.80306630000516,0.968786560175433,0.844380948994182,1.90995750405018,1.14898629821543,2.33184669303881,0.18542530201051,0,0,0,0,0,0,0,0.279902904647316,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0.165306911450672,0.523511883968059,0.518459893167171,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0.147689527174577,0,0,0,0.0974578807397524,0.0962118416403295,0,0.453460767230423,0.221985953374065,0,0.167884616364078,0,0,0.36630324853453,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0.222246727801615,0,0,0,0.25347929989024,0.188626341386076,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0.145346416632329,0,0,0,0.263069711437843,0,0,0,0.197008964751127,0,0.154936841185966,0.578719832943424,0.249810577937946,0.467863216890817,0.429742108096597,0.382576664137687,0,0|short_description=p7@Lsr}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54135 | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|TSSclassifier=NA | |||
|UniProt=Q99KG5 | |||
|association_with_transcript=-160bp_to_NM_001164184,NM_001164185,NM_017405,uc009ghj.2,uc009ghk.2,uc009ghl.2_5end | |||
|cluster_id=chr7:31758648..31758666,- | |||
|description=CAGE_peak_7_at_Lsr_5end | |||
|id=chr7:31758648..31758666,- | |||
|ontology_enrichment_celltype=CL:0002563!1.61e-10!9;CL:0002251!1.61e-10!9;CL:0000066!1.47e-08!25;CL:0000075!2.94e-08!7;CL:0000239!1.21e-07!6;CL:0000677!1.21e-07!6;CL:0000212!1.21e-07!6;CL:0000584!1.21e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.47e-22,9;CL:0002251,2.47e-22,9;CL:0000239,2.47e-19,6;CL:0000677,2.47e-19,6;CL:0000584,2.47e-19,6;CL:0000075,1.71e-16,7;CL:0000066,3.20e-14,25;CL:0002076,6.46e-13,15;CL:0000682,3.32e-11,3;CL:0000223,2.22e-09,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!3.91e-19!59;UBERON:0000160!9.08e-19!43;UBERON:0000344!8.03e-17!15;UBERON:0001242!1.51e-14!13;UBERON:0000060!1.51e-14!13;UBERON:0001262!1.51e-14!13;UBERON:0004786!1.51e-14!13;UBERON:0003350!1.61e-10!9;UBERON:0004808!1.61e-10!9;UBERON:0001277!1.61e-10!9;UBERON:0000485!8.06e-10!11;UBERON:0001007!6.26e-09!128;UBERON:0001555!6.26e-09!128;UBERON:0007026!6.26e-09!128;UBERON:0004119!1.48e-08!130;UBERON:0000925!1.48e-08!130;UBERON:0006595!1.48e-08!130;UBERON:0004923!2.02e-08!24;UBERON:0004921!8.03e-08!126;UBERON:0004185!8.03e-08!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.05e-35,15;UBERON:0000160,4.00e-30,31;UBERON:0001242,5.83e-29,13;UBERON:0001262,5.83e-29,13;UBERON:0004786,5.83e-29,13;UBERON:0003350,2.47e-22,9;UBERON:0004808,2.47e-22,9;UBERON:0001277,2.47e-22,9;UBERON:0004923,3.72e-21,24;UBERON:0005409,1.23e-18,47;UBERON:0000485,4.68e-18,11;UBERON:0002108,1.36e-13,4;UBERON:0000331,8.26e-11,3;UBERON:0002116,8.26e-11,3;UBERON:0001204,8.26e-11,3;UBERON:0001168,8.26e-11,3;UBERON:0001962,3.97e-08,2;UBERON:0001961,3.97e-08,2;UBERON:0001744,3.97e-08,2;UBERON:0001007,2.88e-07,116;UBERON:0001555,2.88e-07,116;UBERON:0007026,2.88e-07,116;UBERON:0004119,4.47e-07,118;UBERON:0000925,4.47e-07,118;UBERON:0006595,4.47e-07,118 | |||
|phase1_expression=0,8.02643437570531,4.09499315450582,1.51232105653415,1.00179145989269,5.03637815735669,3.73780224952841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,5.43974237497583,5.73523202667925,4.59385571292016,4.73838195774982,5.817723282519,3.04037471130198,3.52842181663903,5.54326276638262,0,0,0,4.04392267651784,0.997407872150954,2.45003227514843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186399445825301,0,0.0755715601067855,0,0,0,0.539703191637817,0,0.448026887097336,0,0,0,0,0.422530259330042,0,0,0,0,0.506719730950197,0,0.79928715803342,0,0,0,0,0,0,0,0,0,0.289198713839823,0,0,0,0,0,0,0.209446706813455,1.53274233125155,0,0,0,0,0,0,0,0,0,0.162241263067758,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219195732427575,1.11218899690239,2.089512999133,0.61734640922383,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,0,0,0.991256348951394,0.528901133327089,0,0,0.128867461322093,0.403367049246685,0.444756087689741,0.380451252225118,1.42358718463353,0.658795818896044,0.754005626400808,1.1937388322469,0.58489226135736,2.69645822596266,1.72910439899755,2.38969527905241,0,0,0,0,0.193952487167626,0,0,0,0,0,0.296452627087149,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,0,0,0,0.214337035031592,0,0.178368817602071,0,0,0,0,0,2.80306630000516,0.968786560175433,0.844380948994182,1.90995750405018,1.14898629821543,2.33184669303881,0.18542530201051,0,0,0,0,0,0,0,0.279902904647316,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0.165306911450672,0.523511883968059,0.518459893167171,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0.147689527174577,0,0,0,0.0974578807397524,0.0962118416403295,0,0.453460767230423,0.221985953374065,0,0.167884616364078,0,0,0.36630324853453,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0.222246727801615,0,0,0,0.25347929989024,0.188626341386076,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0.145346416632329,0,0,0,0.263069711437843,0,0,0,0.197008964751127,0,0.154936841185966,0.578719832943424,0.249810577937946,0.467863216890817,0.429742108096597,0.382576664137687,0,0 | |||
|short_description=p7@Lsr | |||
}} |
Latest revision as of 15:28, 26 September 2015
Short description: | p7@Lsr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Lsr_5end |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | -160bp_to_NM_001164184, NM_001164185, NM_017405, uc009ghj.2, uc009ghk.2, uc009ghl.2_5end |
EntrezGene: | Lsr |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.47e-22 | 9 |
epithelial cell of alimentary canal | 2.47e-22 | 9 |
brush border epithelial cell | 2.47e-19 | 6 |
gut absorptive cell | 2.47e-19 | 6 |
enterocyte | 2.47e-19 | 6 |
columnar/cuboidal epithelial cell | 1.71e-16 | 7 |
epithelial cell | 3.20e-14 | 25 |
endo-epithelial cell | 6.46e-13 | 15 |
M cell of gut | 3.32e-11 | 3 |
endodermal cell | 2.22e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.05e-35 | 15 |
intestine | 4.00e-30 | 31 |
intestinal mucosa | 5.83e-29 | 13 |
wall of intestine | 5.83e-29 | 13 |
gastrointestinal system mucosa | 5.83e-29 | 13 |
epithelium of mucosa | 2.47e-22 | 9 |
gastrointestinal system epithelium | 2.47e-22 | 9 |
intestinal epithelium | 2.47e-22 | 9 |
organ component layer | 3.72e-21 | 24 |
gastrointestinal system | 1.23e-18 | 47 |
simple columnar epithelium | 4.68e-18 | 11 |
small intestine | 1.36e-13 | 4 |
ileal mucosa | 8.26e-11 | 3 |
ileum | 8.26e-11 | 3 |
mucosa of small intestine | 8.26e-11 | 3 |
wall of small intestine | 8.26e-11 | 3 |
gut-associated lymphoid tissue | 3.97e-08 | 2 |
mucosa-associated lymphoid tissue | 3.97e-08 | 2 |
lymphoid tissue | 3.97e-08 | 2 |
digestive system | 2.88e-07 | 116 |
digestive tract | 2.88e-07 | 116 |
primitive gut | 2.88e-07 | 116 |
endoderm-derived structure | 4.47e-07 | 118 |
endoderm | 4.47e-07 | 118 |
presumptive endoderm | 4.47e-07 | 118 |